CmoCh05G006050 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G006050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Poly(A) polymerase) (2.7.7.19)
Location	Cmo_Chr05 : 3021298 .. 3026828 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGTTCAGACAGTTCAACTGCTTTTCACCCGGCACCTCAGCCGGCGAGTAATTATGGTGTTACGAAACCGATTTCTCTTGCTGGACCGACGGATGCTGATATTCAGCGCAATATCGAACTGGAGAAGGTGTTGTTACTTTTATTTATTGGTTAAATCTCAATTAATTTGGTTGTTTTTTTTGTGCCGTGTGAAATTGCAGTAAACGAAAAGAATTTCAATTTTGATTGTGTTCTACATATTGGTAGTTCTTGATTGACTCGGGGCTTTACGAAAGTAAAGAAGAAGCTGCGAAAAGAGAAGAGGTTTTGGGCCGCATTGACCAGGTGCAGACCTTCTTCACTTCAATAGTCTTTTACTTAGGGGATTGTTCTCAGTAGCCAGCTCGAACAAAACAGTGTTCTAATCGGTGACGAAAGCGAGATTTTAGTTGATTAATTATTGTTTAATGTATTCAAGCGTTTGACTTCCTTTTATGACATAAACTTCTTGTCCTTAGCCATTTTCTTTCATTCTAGATTGTTAAAAATTGGGTCAAGCAATTAACTCTCCTAAGAGGATATACAGAGCAGATGGTGGAGGATGCAAATGCAGTAATTTTTACTTTTGGGTCTTATCGTCTTGGGGTAAGCATAATATTTGATTTAGTTTTTGGGGAAAAAAGCTTATTACTTTATGCAACTCTTCGTAATTTTTGTTGGAGTCACGGACTGGTTGGATGATTGCTTAGAGCAATGATCTTTTATTTCTTGGAAAGTTATGTTCTTCCTGTATTTTTCCCTTATTGGCCTGTGCATTATACTCAAATATATGACTTCCAAGTATTCAAAGATGTGACTTAAAATTAACCATATGACAGGTACATGGACCAGGAAGTGACATAGACACATTGTGTGTTGGACCATCTTACGTGAATAGAGAAGTGAGTAGTATAAATTGCTGATACTTCAACAACATTTTTTGCCTTCTCATATGGGCTTAAATTTCAGCTTATTCTTGATCTGACAATTTGTTTTTTTTTTTCTAATGGAGGACTTCTTCATCATCTTGCATAATATTTTAGCTGAAATGGAAGAGGTTACTGATCTTCAACCGGTTCCCGATGCTCATGTTCCAGTAATGAGATTCAAATTTATGGGGATATCAATTGATCTTCTGTATGCGAGCATTTCCGTACGGGTTGTTCCTGAAGTAAGTTCTAGCACTTTCTTTGAAGTTTTATTATATTTATTTTATGTTTTCAGATTGTTGTTACTTTATTTTATGTTTTCACAAAACTGTAACCATATTTCTTTTTGTTACATTATTTATTGTAGTTGATCATATGAGATTTCGAACTATTGTATGTTATATGTTACTTCTCTCTCTACTTCTATATTCAGCTTTATGGCGAATATTTCCATAATTCATGCAGAACTACCTGTCTGATAAAAGTCTAAATGCCAAACATTGTAATGTGAATGGACATGAATGCCAATTGTGATTACTTTTATGGATTATTTTTGTAGTTTTATTTATCGTTTGAACCGTTTCTACCAGCTTTCATGTACCCTCCAGTGCAGTCACCATCTTTTCTTGTTTGCATATCCTGTGGCTGAAGCTGTATAATTTGTTCCCTCCTTTCCCGACAAATGTGGTTTTGATTGAATTTCAGGGATTTCTTTCTTCTATCTTCTTGTTTTATTTTATTTTATCTTTTACATGGCTAGCGGCTGGATAGAGAAATTTCTCTCCTGAAAGAGGACTATTATATACAACAGGAATTGCTCTTTTCTCCCTCACACCATTCCGAACATTTTTTATTTTAATTATCTGATAAGTTCGTTTTGTTACCTTGAGTTTGTGTAGGTGCACTAATTGTTCACTGTGTGTGTGTGTGTGTTAACACTGAACAGGTGATACATTTTTGCATAACCTTATCTGCTGTAGATTTAACTGTGATTGGGTGGTATCACTTACTAATTGTTTTACTACTAATGTTTCAATCCTCTTTTTCCCTGATCTTTTGCACTGTTGCTATTTCCCATAAACTTTTTGCAATTTACTTAATCATCAGGAGCTGAACATCTCTCATGGATCTGTGCTGTGCAATGTTGATGAACAAACTGTTCGAAGTCTTAATGGATGCCGAGTTGCAGATCAAATTCTAAGACTTGTTCCAAACGTTGAGGTGAAACACATTTTAAACCTGAGTTATTTTTCCATAAATCTATTTCGTGATTTTCTCTGTAACCTATAATTGCCAATTGCAGCACTTTCGCACGACACTCAGATGTTTAAAGTTTTGGGCCAAAAGACGGGGTGTATACTCCAATGTAAGTTGTAAGATCATGGAGTTTTTCCTCTTAGCTTCACTTATATTTTTTCATAATTCAGATTTCACTTTTGTTTTTTTTTTCATGTATAGGTCACTGGGTTCCTTGGAGGTGTAAATTGGGCACTTTTGGTTGCTCAGGTATGCCAGCTTTACCCCAATGCAATTCCAAGCATGCTAGTTTCTCGTTTCTTCAGAGTGTACACCCAGTGGCGTTGGCCAAATCCTGTAATGCTATGTTCAATAGAAGAGAATGAACTTGGATTTCCTGTTTGGGATCCTCGTAAAAATCCGCGTGATCGATTTCATCTTATGCCAATAATAACTCCTGCTTACCCTTGCATGAACTCTAGCTATAATGTCTCAACTAGTACTCTCCGTGTTATGATGGAACAGTTCCGCTGTGGTAATAATATCTGTGAGGTGAGGTTATTTTTATTTGGATTCAATATCTTCTAAATTTTAACCTGCTCTTAATAGTATTTCTCTTACATCTCTGAGTGCCTTAACAGGAGATTGACATGAGCAAAGCCCAGTGGAGTGCTTTATTTGAGCCATATTTATTTTTCGAGATATACAAAAACTATCTACAGGTGGACATAATTGCAGCAGATGCTGATGATTTGCTAGCTTGGAAAGGATGGGTAGAATCTCGCTTTAGACAGCTTACCTTGAAGGTAAATCTATTATTCTTTCCTTATTATCTATCTAGAGTTGGAGGGTCTTTCAAGAGCCTGATAGATTCTACTTTTCCTTCCTGCAGATAGAGAGAGACACCAGGGGGATGCTGCAGTGCCATCCCTATCCTATTGAGTATTCTGACACGTCCAAGCCATGTTCTCACTGTGCTTTTTTCATGGGCTTGCAGAGAAAAGAGGGATTAAGAGGCCAAGGAGGCCAGCAGTTTGACATACGAGGAACAGTTGATGAGTTCAGGCAAGAGATAAACACGTATGCTTTTTGGAAGCCAGGGATGGATATCCATGTTTCTCATGTGCGGAGGAAGCAACTGCCCACCTTTGTTTTTCCTGATGGACACAAACGGGCAAAGCCAGTCAGGCATGAAGGGCAGCAAGCTGACCCAGTTTGTGCTGACATGCTCCAAGATCAGTCTGGGATCACTGAGAAAGGGAAAAAAAGGAAAAGTGACCATGAAGAAACAGAGATGGAAAAGAAACAAGCCTTTGCCAGTCAACCAGCAGAAGAATCTCCCATGCTTGAAACTCATGGTGGTGGATCAGATGGGAAATTGCCGAGTTTAAAATCTGCAAATGCAGATTGTTACTCTGAGGTTTGGCCATCTTTTGAACAGCTTGATAGCAGAATGGATACTGATGGAAATGGCATGGATATTCCATCGTTGACCAAGGAGACTGGTCCTACGATGGATCAGGCAGAGCTAGCTAAAGTAATGGAAGGATCTTCCTCAACGAAGGAGGTGCCTGATCTATATCAAGGCGGTCTTTCGAAATCCGAGGAAGCTTTACAAATTGAGATGAACCAGGAAAAAATTGAGGGATTAGCATCTAATATGAGTGGAAGTGCACAGACAGTAGCCATCAGAAATTTCCTCCATTGGACAAAGGATGTTGTGAGGATTGACTCTGAGTCAGCAAATCCATTTGGTCAAACGACCGGGGAAGAGAGTACCCAAGTTGACTTTCAACCAAATTGCAATGCACATAACCTTAGTTGCAAGGTGAGTGACTGAGTTTGACTACATTGGATTACAAATCATAGCCAATGGCAGTAAGAGAAGTGGCATTCTGGAGATAGTGAGTCGGGTATTTGCAGGGCAATGATAGCAGGACGGATCCAGAGTTGGCGTTGGAAAATGGTTCCGTTGTGACTGGAAGAGTGTTTCAAAATGGTCAACCTAAAGAGTTGGAGGTTTGAATCTCTAATTGCTTAAATTACTTACATTTTATATATAAGTACACAGCACATTATAACTGATGACGTTGCTTCCACCAAGGAATCTAAGATGAGAGGAGGCTGAGATTTTAATTGATATCAATCAGAAGAATAGAAGATATAAACATATTTATGGTTTGATACCTTAAGTTTTTATTCTTTTTGCCAAAAAGCACTCGTTGTTTCATTCCATATCTCTTCTCCATGCCTTCTCTCCTTTTCTCTCTTTCCGACCCATAATTGTTGGTCTATTTTCCTGTTGCATTTTAATTATCATTTTGTAATTCCAAATTTTCGCACAGGCAATCTTCTGACTGGTGCACATGTGGTGGCAGGTCCTGCGCCACTATACGTGTTATATTTTCAGTAACTGTGCTAAAGAACCCATTTCTGCTCTCAAGTTTTTCCCGCATTACCTTTTTTCCCTCATGAAAATCTTTGCCTAATTAGTTCTTTTCTTTTTTAAACTTCATTTTATAGCCGAAGTTCAGCGATCAGGCAGTCCCAGAATGGAGCTAAATAAGACTCTATGCAAAATTCTGGTGAAAAAGAGACGGGAGGATCTGGCAAGAAGGCATGTGTATTTAGCCTCGATGCAATTTCAATTAGAAAAAGGATTATTTTTCTGAATCTGGCAAAAGGATTAGTACTTAATTTGCCTGATTATTATGTTTATTTTGATCATCTTCTCTTTATGTTGCTTGTTTGGCTGTTTAGCATCCTTTGAACAGACTGAATCTGAACCTCAAAGACATGAACATGTGGAGGGGAATTTCTGGATGGCAGATGGGTTGGGAGAGCGGGAGCTAGCCATATTTAGTAAGTATCACCTCAATAACTGGCTTTGATATTGATGTAGATAGTGTTCATCATGCATGAACCTGCGGACATGGGGAGGGGTCGCGTGGCTTGGTGGCGTGGCATACAATTCAGCTCCAATATGCTGTTTGTAGTCCTTGAACATGGGAATCCGGAGAAGCAAGCACTGTTGGACCTTAAATAAATGCGCTTGTGAGTTATGCTTTGAAGATTGTGGTGCATTTCATGTTAGATGCCTGTAACTGGAACTGTCACAGCTTCTTCCCATGTTTAGAAGACGGCAGCTTCTTTGTGAAAAGGAGGAACTGCTCGTGAGGTCGTTTCTAAGGAGAGAATCTAATCTACACTTATTGAGAGAGACCTTCAGTCTTGCAGATTAACCATATTGAGTTTCAATTGAACATTGTGCGGAGAAAGTTTCCATGTTTTCTTCCATTTCATCTCTGTTTTTCTTTTCCTCCTCTGTTCTTGGGGGCTGGGG

mRNA sequence

ATGGTGGGTTCAGACAGTTCAACTGCTTTTCACCCGGCACCTCAGCCGGCGAGTAATTATGGTGTTACGAAACCGATTTCTCTTGCTGGACCGACGGATGCTGATATTCAGCGCAATATCGAACTGGAGAAGTTCTTGATTGACTCGGGGCTTTACGAAAGTAAAGAAGAAGCTGCGAAAAGAGAAGAGGTTTTGGGCCGCATTGACCAGGTGCAGACCTTCTTCACTTCAATAGGGATTGTTCTCAGTAGCCAGCTCGAACAAAACAGTGTTCTAATCGGTGACGAAAGCGAGATTTTAATTGTTAAAAATTGGGTCAAGCAATTAACTCTCCTAAGAGGATATACAGAGCAGATGGTGGAGGATGCAAATGCAGTAATTTTTACTTTTGGGTCTTATCGTCTTGGGGTAAGCATAATATTTGATTTAGTTTTTGGGGAAAAAAGCTTATTACTTTATGCAACTCTTCGTAATTTTTGTTGGAGTCACGGACTGGTACATGGACCAGGAAGTGACATAGACACATTGTGTGTTGGACCATCTTACGTGAATAGAGAAGACTTCTTCATCATCTTGCATAATATTTTAGCTGAAATGGAAGAGGTTACTGATCTTCAACCGGTTCCCGATGCTCATGTTCCAGTAATGAGATTCAAATTTATGGGGATATCAATTGATCTTCTGTATGCGAGCATTTCCGTACGGGTTGTTCCTGAAGAGCTGAACATCTCTCATGGATCTGTGCTGTGCAATGTTGATGAACAAACTGTTCGAAGTCTTAATGGATGCCGAGTTGCAGATCAAATTCTAAGACTTGTTCCAAACGTTGAGCACTTTCGCACGACACTCAGATGTTTAAAGTTTTGGGCCAAAAGACGGGGTGTATACTCCAATGTCACTGGGTTCCTTGGAGGTGTATGCCAGCTTTACCCCAATGCAATTCCAAGCATGCTAGTTTCTCGTTTCTTCAGAGTGTACACCCAGTGGCGTTGGCCAAATCCTGTAATGCTATGTTCAATAGAAGAGAATGAACTTGGATTTCCTGTTTGGGATCCTCGTAAAAATCCGCGTGATCGATTTCATCTTATGCCAATAATAACTCCTGCTTACCCTTGCATGAACTCTAGCTATAATGTCTCAACTAGTACTCTCCGTGTTATGATGGAACAGTTCCGCTGTGGTAATAATATCTGTGAGGAGATTGACATGAGCAAAGCCCAGTGGAGTGCTTTATTTGAGCCATATTTATTTTTCGAGATATACAAAAACTATCTACAGGTGGACATAATTGCAGCAGATGCTGATGATTTGCTAGCTTGGAAAGGATGGGTAGAATCTCGCTTTAGACAGCTTACCTTGAAGAGTTGGAGGGTCTTTCAAGAGCCTGATAGATTCTACTTTTCCTTCCTGCAGATAGAGAGAGACACCAGGGGGATGCTGCAGTGCCATCCCTATCCTATTGAGTATTCTGACACGTCCAAGCCATGTTCTCACTGTGCTTTTTTCATGGGCTTGCAGAGAAAAGAGGGATTAAGAGGCCAAGGAGGCCAGCAGTTTGACATACGAGGAACAGTTGATGAGTTCAGGCAAGAGATAAACACGTATGCTTTTTGGAAGCCAGGGATGGATATCCATGTTTCTCATGTGCGGAGGAAGCAACTGCCCACCTTTGTTTTTCCTGATGGACACAAACGGGCAAAGCCAGTCAGGCATGAAGGGCAGCAAGCTGACCCAGTTTGTGCTGACATGCTCCAAGATCAGTCTGGGATCACTGAGAAAGGGAAAAAAAGGAAAAGTGACCATGAAGAAACAGAGATGGAAAAGAAACAAGCCTTTGCCAGTCAACCAGCAGAAGAATCTCCCATGCTTGAAACTCATGGTGGTGGATCAGATGGGAAATTGCCGAGTTTAAAATCTGCAAATGCAGATTGTTACTCTGAGGTTTGGCCATCTTTTGAACAGCTTGATAGCAGAATGGATACTGATGGAAATGGCATGGATATTCCATCGTTGACCAAGGAGACTGGTCCTACGATGGATCAGGCAGAGCTAGCTAAAGTAATGGAAGGATCTTCCTCAACGAAGGAGGTGCCTGATCTATATCAAGGCGGTCTTTCGAAATCCGAGGAAGCTTTACAAATTGAGATGAACCAGGAAAAAATTGAGGGATTAGCATCTAATATGAGTGGAAGTGCACAGACAGTAGCCATCAGAAATTTCCTCCATTGGACAAAGGATGTTGTGAGGATTGACTCTGAGTCAGCAAATCCATTTGGTCAAACGACCGGGGAAGAGAGTACCCAAGTTGACTTTCAACCAAATTGCAATGCACATAACCTTAGTTGCAAGTTTGACTACATTGGATTACAAATCATAGCCAATGGCAGTAAGAGAAGTGGCATTCTGGAGATAGTGAGTCGGGGCAATGATAGCAGGACGGATCCAGAGTTGGCGTTGGAAAATGGTTCCGTTGTGACTGGAAGAGTGTTTCAAAATGGTCAACCTAAAGAGCAATCTTCTGACTGGTGCACATGTGGTGGCAGGTCCTGCGCCACTATACCCGAAGTTCAGCGATCAGGCAGTCCCAGAATGGAGCTAAATAAGACTCTATGCAAAATTCTGGTGAAAAAGAGACGGGAGGATCTGGCAAGAAGGCATCATCCTTTGAACAGACTGAATCTGAACCTCAAAGACATGAACATGTGGAGGGGAATTTCTGGATGGCAGATGGGTTGGGAGAGCGGGAGCTAGCCATATTTAGTAAGTATCACCTCAATAACTGGCTTTGATATTGATGTAGATAGTGTTCATCATGCATGAACCTGCGGACATGGGGAGGGGTCGCGTGGCTTGGTGGCGTGGCATACAATTCAGCTCCAATATGCTGTTTGTAGTCCTTGAACATGGGAATCCGGAGAAGCAAGCACTGTTGGACCTTAAATAAATGCGCTTGTGAGTTATGCTTTGAAGATTGTGGTGCATTTCATGTTAGATGCCTGTAACTGGAACTGTCACAGCTTCTTCCCATGTTTAGAAGACGGCAGCTTCTTTGTGAAAAGGAGGAACTGCTCGTGAGGTCGTTTCTAAGGAGAGAATCTAATCTACACTTATTGAGAGAGACCTTCAGTCTTGCAGATTAACCATATTGAGTTTCAATTGAACATTGTGCGGAGAAAGTTTCCATGTTTTCTTCCATTTCATCTCTGTTTTTCTTTTCCTCCTCTGTTCTTGGGGGCTGGGG

Coding sequence (CDS)

ATGGTGGGTTCAGACAGTTCAACTGCTTTTCACCCGGCACCTCAGCCGGCGAGTAATTATGGTGTTACGAAACCGATTTCTCTTGCTGGACCGACGGATGCTGATATTCAGCGCAATATCGAACTGGAGAAGTTCTTGATTGACTCGGGGCTTTACGAAAGTAAAGAAGAAGCTGCGAAAAGAGAAGAGGTTTTGGGCCGCATTGACCAGGTGCAGACCTTCTTCACTTCAATAGGGATTGTTCTCAGTAGCCAGCTCGAACAAAACAGTGTTCTAATCGGTGACGAAAGCGAGATTTTAATTGTTAAAAATTGGGTCAAGCAATTAACTCTCCTAAGAGGATATACAGAGCAGATGGTGGAGGATGCAAATGCAGTAATTTTTACTTTTGGGTCTTATCGTCTTGGGGTAAGCATAATATTTGATTTAGTTTTTGGGGAAAAAAGCTTATTACTTTATGCAACTCTTCGTAATTTTTGTTGGAGTCACGGACTGGTACATGGACCAGGAAGTGACATAGACACATTGTGTGTTGGACCATCTTACGTGAATAGAGAAGACTTCTTCATCATCTTGCATAATATTTTAGCTGAAATGGAAGAGGTTACTGATCTTCAACCGGTTCCCGATGCTCATGTTCCAGTAATGAGATTCAAATTTATGGGGATATCAATTGATCTTCTGTATGCGAGCATTTCCGTACGGGTTGTTCCTGAAGAGCTGAACATCTCTCATGGATCTGTGCTGTGCAATGTTGATGAACAAACTGTTCGAAGTCTTAATGGATGCCGAGTTGCAGATCAAATTCTAAGACTTGTTCCAAACGTTGAGCACTTTCGCACGACACTCAGATGTTTAAAGTTTTGGGCCAAAAGACGGGGTGTATACTCCAATGTCACTGGGTTCCTTGGAGGTGTATGCCAGCTTTACCCCAATGCAATTCCAAGCATGCTAGTTTCTCGTTTCTTCAGAGTGTACACCCAGTGGCGTTGGCCAAATCCTGTAATGCTATGTTCAATAGAAGAGAATGAACTTGGATTTCCTGTTTGGGATCCTCGTAAAAATCCGCGTGATCGATTTCATCTTATGCCAATAATAACTCCTGCTTACCCTTGCATGAACTCTAGCTATAATGTCTCAACTAGTACTCTCCGTGTTATGATGGAACAGTTCCGCTGTGGTAATAATATCTGTGAGGAGATTGACATGAGCAAAGCCCAGTGGAGTGCTTTATTTGAGCCATATTTATTTTTCGAGATATACAAAAACTATCTACAGGTGGACATAATTGCAGCAGATGCTGATGATTTGCTAGCTTGGAAAGGATGGGTAGAATCTCGCTTTAGACAGCTTACCTTGAAGAGTTGGAGGGTCTTTCAAGAGCCTGATAGATTCTACTTTTCCTTCCTGCAGATAGAGAGAGACACCAGGGGGATGCTGCAGTGCCATCCCTATCCTATTGAGTATTCTGACACGTCCAAGCCATGTTCTCACTGTGCTTTTTTCATGGGCTTGCAGAGAAAAGAGGGATTAAGAGGCCAAGGAGGCCAGCAGTTTGACATACGAGGAACAGTTGATGAGTTCAGGCAAGAGATAAACACGTATGCTTTTTGGAAGCCAGGGATGGATATCCATGTTTCTCATGTGCGGAGGAAGCAACTGCCCACCTTTGTTTTTCCTGATGGACACAAACGGGCAAAGCCAGTCAGGCATGAAGGGCAGCAAGCTGACCCAGTTTGTGCTGACATGCTCCAAGATCAGTCTGGGATCACTGAGAAAGGGAAAAAAAGGAAAAGTGACCATGAAGAAACAGAGATGGAAAAGAAACAAGCCTTTGCCAGTCAACCAGCAGAAGAATCTCCCATGCTTGAAACTCATGGTGGTGGATCAGATGGGAAATTGCCGAGTTTAAAATCTGCAAATGCAGATTGTTACTCTGAGGTTTGGCCATCTTTTGAACAGCTTGATAGCAGAATGGATACTGATGGAAATGGCATGGATATTCCATCGTTGACCAAGGAGACTGGTCCTACGATGGATCAGGCAGAGCTAGCTAAAGTAATGGAAGGATCTTCCTCAACGAAGGAGGTGCCTGATCTATATCAAGGCGGTCTTTCGAAATCCGAGGAAGCTTTACAAATTGAGATGAACCAGGAAAAAATTGAGGGATTAGCATCTAATATGAGTGGAAGTGCACAGACAGTAGCCATCAGAAATTTCCTCCATTGGACAAAGGATGTTGTGAGGATTGACTCTGAGTCAGCAAATCCATTTGGTCAAACGACCGGGGAAGAGAGTACCCAAGTTGACTTTCAACCAAATTGCAATGCACATAACCTTAGTTGCAAGTTTGACTACATTGGATTACAAATCATAGCCAATGGCAGTAAGAGAAGTGGCATTCTGGAGATAGTGAGTCGGGGCAATGATAGCAGGACGGATCCAGAGTTGGCGTTGGAAAATGGTTCCGTTGTGACTGGAAGAGTGTTTCAAAATGGTCAACCTAAAGAGCAATCTTCTGACTGGTGCACATGTGGTGGCAGGTCCTGCGCCACTATACCCGAAGTTCAGCGATCAGGCAGTCCCAGAATGGAGCTAAATAAGACTCTATGCAAAATTCTGGTGAAAAAGAGACGGGAGGATCTGGCAAGAAGGCATCATCCTTTGAACAGACTGAATCTGAACCTCAAAGACATGAACATGTGGAGGGGAATTTCTGGATGGCAGATGGGTTGGGAGAGCGGGAGCTAG

Homology

[Close]

BLAST of CmoCh05G006050 vs. Swiss-Prot
Match: PAPS4_ARATH (Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana GN=PAPS4 PE=1 SV=1)

HSP 1 Score: 786.2 bits (2029), Expect = 3.9e-226
Identity = 404/627 (64.43%), Postives = 458/627 (73.05%), Query Frame = 1


Query: 1   MVGSDSSTAFHPAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVG+ +     P      +YG+TKP+SLAGP+ ADI+RN+ELEK+L+D GLYESK++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 61  REEVLGRIDQVQTFFTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMV 120
           REEVLGRIDQ                              IVK+WVKQLT  RGYT+QMV
Sbjct: 62  REEVLGRIDQ------------------------------IVKHWVKQLTQQRGYTDQMV 121

Query: 121 EDANAVIFTFGSYRLGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGP 180
           EDANAVIFTFGSYRLGV                             HGPG+DIDTLCVGP
Sbjct: 122 EDANAVIFTFGSYRLGV-----------------------------HGPGADIDTLCVGP 181

Query: 181 SYVNRE-DFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPE 240
           SYVNRE DFFIILH+ILAEMEEVT+L PVPDAHVPVM+FKF GI IDLLYASIS+ VVP+
Sbjct: 182 SYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQ 241

Query: 241 ELNISHGSVLCNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNV 300
           +L+IS  SVLC VDE TVRSLNGCRVADQIL+LVPN EHFRTTLRCLK+WAK+RGVYSNV
Sbjct: 242 DLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNV 301

Query: 301 TGFLGG---------VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVW 360
           TGFLGG         VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLC+IEE+ELGFPVW
Sbjct: 302 TGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVW 361

Query: 361 DPRKNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSA 420
           D RKN RDR+HLMPIITPAYPCMNSSYNVS STLRVM EQF+ GNNI +EI+++K  WS+
Sbjct: 362 DRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSS 421

Query: 421 LFEPYLFFEIYKNYLQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFL 480
           LFE Y+FFE YKNYLQVDI+AADA+DLLAWKGWVESRFRQLTLK                
Sbjct: 422 LFEQYMFFEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLK---------------- 481

Query: 481 QIERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQ 540
            IERDT GML CHP P EY DT++   HCAFFMGLQR EG+ GQ  QQFDIRGTVDEFRQ
Sbjct: 482 -IERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQ 541

Query: 541 EINTYAFWKPGMDIHVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSG- 600
           E+N Y FWKPGMD+ VSHVRR+QLP FVFP+G++R +  RH+         D     SG 
Sbjct: 542 EVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSRHQNLPGGKSGEDGSVSHSGS 552

Query: 601 ITEKGKKRKSDHE--ETEMEKKQAFAS 615
           + E+  KRK+D E  +   EK +  AS
Sbjct: 602 VVERHAKRKNDSEMMDVRPEKPEKRAS 552

[Close]

BLAST of CmoCh05G006050 vs. Swiss-Prot
Match: PAPS2_ARATH (Nuclear poly(A) polymerase 2 OS=Arabidopsis thaliana GN=PAPS2 PE=1 SV=2)

HSP 1 Score: 780.8 bits (2015), Expect = 1.6e-224
Identity = 394/615 (64.07%), Postives = 455/615 (73.98%), Query Frame = 1


Query: 12  PAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQV 71
           P      +YG+T+P+S+AGP+ AD++RN+ELEKFL+D GLYESKEE  +REEV+ RIDQ 
Sbjct: 15  PVKASLKSYGITEPLSIAGPSAADVKRNLELEKFLVDEGLYESKEETMRREEVVVRIDQ- 74

Query: 72  QTFFTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMVEDANAVIFTFG 131
                                        IVK+WVKQLT  RGYT+QMVEDANAVIFTFG
Sbjct: 75  -----------------------------IVKHWVKQLTRQRGYTDQMVEDANAVIFTFG 134

Query: 132 SYRLGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGPSYVNR-EDFFI 191
           SYRLG                             VHGP +DIDTLCVGPSYVNR EDFFI
Sbjct: 135 SYRLG-----------------------------VHGPMADIDTLCVGPSYVNREEDFFI 194

Query: 192 ILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEELNISHGSVLC 251
              +ILAEMEEVT+LQPV DAHVPVM+FKF GISIDLLYASIS+ V+P++L+IS+ SVLC
Sbjct: 195 FFRDILAEMEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIPQDLDISNSSVLC 254

Query: 252 NVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGV---- 311
           +VDEQTVRSLNGCRVADQIL+LVPN EHFRTTLRCLK+WAK+RGVYSNVTGFLGGV    
Sbjct: 255 DVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWAL 314

Query: 312 -----CQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRKNPRDRFH 371
                CQ YPNAIPSMLVSRFFRVYTQWRWPNPVMLC+IEE++L FPVWDPRKN RDR+H
Sbjct: 315 LVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYH 374

Query: 372 LMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSALFEPYLFFEIY 431
           LMPIITPAYPCMNSSYNVS STLRVM EQF+ GN IC+EI+++K  WS+LF+ Y+FFE Y
Sbjct: 375 LMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAY 434

Query: 432 KNYLQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQIERDTRGMLQ 491
           KNYLQVD++AADA+DLLAWKGWVESRFRQLTLK                 IERDT GML 
Sbjct: 435 KNYLQVDVLAADAEDLLAWKGWVESRFRQLTLK-----------------IERDTNGMLM 494

Query: 492 CHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQEINTYAFWKPG 551
           CHP P EY DTSK   HCAFFMGLQR +G  GQ  QQFDIRGTVDEFRQE+N Y FW+PG
Sbjct: 495 CHPQPNEYVDTSKQFRHCAFFMGLQRADGFGGQECQQFDIRGTVDEFRQEVNMYMFWRPG 553

Query: 552 MDIHVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSGITEKGKKRKSDH 611
           MD+HVSHVRR+QLP+FVFP+G+KR++  RH+ QQ      + +   S   E+  KRK+D 
Sbjct: 555 MDVHVSHVRRRQLPSFVFPNGYKRSRQSRHQSQQCREPGDEGVGSLSDSVERYAKRKNDD 553

Query: 612 E--ETEMEKKQAFAS 615
           E   +  EK++  AS
Sbjct: 615 EIMNSRPEKREKRAS 553

[Close]

BLAST of CmoCh05G006050 vs. Swiss-Prot
Match: PAPS1_ARATH (Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana GN=PAPS1 PE=1 SV=1)

HSP 1 Score: 618.2 bits (1593), Expect = 1.4e-175
Identity = 319/654 (48.78%), Postives = 405/654 (61.93%), Query Frame = 1


Query: 15  QPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQVQTF 74
           Q    +GV++PIS+ GPT+ D+ +  ELEK L D GLYESKEEA +REEVLG +DQ    
Sbjct: 6   QNGQRFGVSEPISMGGPTEFDVIKTRELEKHLQDVGLYESKEEAVRREEVLGILDQ---- 65

Query: 75  FTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYR 134
                                     IVK W+K ++  +G  +Q++ +ANA IFTFGSYR
Sbjct: 66  --------------------------IVKTWIKTISRAKGLNDQLLHEANAKIFTFGSYR 125

Query: 135 LGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGPSYVNRE-DFFIILH 194
           LG                             VHGPG+DIDTLCVGP +  RE DFF  L 
Sbjct: 126 LG-----------------------------VHGPGADIDTLCVGPRHATREGDFFGELQ 185

Query: 195 NILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEELNISHGSVLCNVD 254
            +L+EM EVT+L PVPDAHVP+M FK  G+SIDLLYA + + V+PE+L++S  S+L N D
Sbjct: 186 RMLSEMPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQNAD 245

Query: 255 EQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGG-------- 314
           EQTVRSLNGCRV DQILRLVPN+++FRTTLRC++FWAKRRGVYSNV+GFLGG        
Sbjct: 246 EQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVA 305

Query: 315 -VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRKNPRDRFHLMP 374
            +CQLYPNA+P++LVSRFFRV+ QW WPN + LCS +E  LG  VWDPR NP+DR H+MP
Sbjct: 306 RICQLYPNALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMP 365

Query: 375 IITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSALFEPYLFFEIYKNY 434
           IITPAYPCMNSSYNVS STLR+M  +F+ GN ICE ++ +KA W  LFEP+ FFE YKNY
Sbjct: 366 IITPAYPCMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFEAYKNY 425

Query: 435 LQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQIERDTRGMLQCHP 494
           LQ+DI AA+ DDL  WKGWVESR RQLTLK  R F+                  ML CHP
Sbjct: 426 LQIDISAANVDDLRKWKGWVESRLRQLTLKIERHFK------------------MLHCHP 485

Query: 495 YPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQEINTYAFWKPGMDI 554
           +P ++ DTS+P  HC++FMGLQRK+G+    G+QFDIR TV+EF+  +N Y  W PGM+I
Sbjct: 486 HPHDFQDTSRPL-HCSYFMGLQRKQGVPAAEGEQFDIRRTVEEFKHTVNAYTLWIPGMEI 545

Query: 555 HVSHVRRKQLPTFVFPDG------------HKRAKPVRHEGQQADPVCADMLQDQSGITE 614
            V H++R+ LP FVFP G              R    R+    + P       + S  ++
Sbjct: 546 SVGHIKRRSLPNFVFPGGVRPSHTSKGTWDSNRRSEHRNSSTSSAPAATTTTTEMSSESK 581

Query: 615 KGKKRKSDHEETEMEKKQAFASQP------AEESPMLETHGGGSDGKLPSLKSA 641
            G     D ++ +    +    QP      A   P+    GG  +  + S+ S+
Sbjct: 606 AGSNSPVDGKKRKWGDSETLTDQPRNSKHIAVSVPVENCEGGSPNPSVGSICSS 581

[Close]

BLAST of CmoCh05G006050 vs. Swiss-Prot
Match: PAP_DICDI (Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 6.1e-110
Identity = 239/625 (38.24%), Postives = 331/625 (52.96%), Query Frame = 1


Query: 21  GVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQVQTFFTSIGI 80
           GVT+PIS A P+  D + + ELE  LI   L+ES EE+ KREE+LG+++Q          
Sbjct: 54  GVTEPISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQ---------- 113

Query: 81  VLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVSII 140
                               IV+ W KQ++L +GY EQ   +  A IFTFGSYRLG    
Sbjct: 114 --------------------IVREWAKQVSLKKGYPEQTASEVVAKIFTFGSYRLG---- 173

Query: 141 FDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGPSYVNREDFFIILHNILAEME 200
                                    VHGPGSDIDTLCVGP ++ R DFF  L +IL    
Sbjct: 174 -------------------------VHGPGSDIDTLCVGPKHIMRSDFFDDLSDILKVHP 233

Query: 201 EVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEELN-ISHGSVLCNVDEQTVRS 260
           E+T+   V DA VPV+   F GI IDL+YA +++  +PEELN +   S L N+DE+++ S
Sbjct: 234 EITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKSILS 293

Query: 261 LNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGV---------CQLY 320
           LNGCRV DQIL+LVPN+ +FR  LRC+K WA RRG+YSN+ GFLGGV         CQLY
Sbjct: 294 LNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTARICQLY 353

Query: 321 PNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENE-LGFPVWDPRKNPRDRFHLMPIITPA 380
           PN+ PS ++ RFF+VY  W+WP P++LC I+E   LG  VW+P+   RD+ HLMPIITPA
Sbjct: 354 PNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPK---RDKAHLMPIITPA 413

Query: 381 YPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSALFEPYLFFEIYKNYLQVDI 440
           YP MNS+YNVS STL++M  +F  G  I  +I+  +  W  L E   FF  Y  Y+++D 
Sbjct: 414 YPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSFYIEIDC 473

Query: 441 IAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQIERDTRGMLQCHPYPIEY 500
            + + +D   W+GW+ES+                RF  S L+    T  M    PYP  +
Sbjct: 474 YSMNEEDSRKWEGWIESKL---------------RFLISNLE---STPKMKFAVPYPKGF 533

Query: 501 SD----TSKPCSHC-AFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQEINTYAFWKPG--- 560
           ++     + P   C +FFMGL           +  D+   V EF   I  +   +P    
Sbjct: 534 TNNLHKANNPDQICTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDT 586

Query: 561 MDIHVSHVRRKQLPTFVFPDG-HKRAKPVRHEGQQADPVCADMLQDQSGITEKGKKRKSD 620
           MDI V ++++KQLP FV  +G  +  K  +      +P            +   KK KS+
Sbjct: 594 MDIKVQYIKKKQLPAFVKDEGPEEPVKTTKKRSSTGEP------------SATRKKLKSE 586

Query: 621 HEETEMEKKQAFASQPAEESPMLET 626
           + + ++   ++  +     +P   T
Sbjct: 654 NSDNKLNSPKSPITTNINSTPTTST 586

[Close]

BLAST of CmoCh05G006050 vs. Swiss-Prot
Match: PAPOA_HUMAN (Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4)

HSP 1 Score: 375.6 bits (963), Expect = 1.6e-102
Identity = 215/552 (38.95%), Postives = 301/552 (54.53%), Query Frame = 1


Query: 16  PASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQVQTFF 75
           P  +YG+T PISLA P + D     +L + L   G++E +EE  +R  +LG+++      
Sbjct: 16  PQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQRRILILGKLNN----- 75

Query: 76  TSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRL 135
                                    +VK W+++++  +   + ++E+    IFTFGSYRL
Sbjct: 76  -------------------------LVKEWIREISESKNLPQSVIENVGGKIFTFGSYRL 135

Query: 136 GVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGPSYVNREDFFIILHNI 195
           GV                             H  G+DID LCV P +V+R DFF   ++ 
Sbjct: 136 GV-----------------------------HTKGADIDALCVAPRHVDRSDFFTSFYDK 195

Query: 196 LAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEELNISHGSVLCNVDEQ 255
           L   EEV DL+ V +A VPV++  F GI ID+L+A ++++ +PE+L++   S+L N+D +
Sbjct: 196 LKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 255

Query: 256 TVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGV--------- 315
            +RSLNGCRV D+IL LVPN+++FR TLR +K WAKR  +YSN+ GFLGGV         
Sbjct: 256 CIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 315

Query: 316 CQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRKNPRDRFHLMPII 375
           CQLYPNAI S LV +FF V+++W WPNPV+L   EE  L  PVWDPR NP DR+HLMPII
Sbjct: 316 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 375

Query: 376 TPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSALFEPYLFFEIYKNYLQ 435
           TPAYP  NS+YNVS ST  VM+E+F+ G  I +EI +SKA+WS LFE   FF+ YK+Y+ 
Sbjct: 376 TPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIV 435

Query: 436 VDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQIERDTRGMLQCHPYP 495
           +   A      L W G VES+ R L                S  + E  T   +    +P
Sbjct: 436 LLASAPTEKQRLEWVGLVESKIRILV--------------GSLEKNEFITLAHVNPQSFP 493

Query: 496 IEYSDTSKPCSHCAFFMGLQRKEGLRGQG---GQQFDIRGTVDE-FRQEINTYAFWKPGM 555
               +  K      + +GL  K+    +       +DI+   D  +RQ IN+  F +  M
Sbjct: 496 APKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDM 493

[Close]

BLAST of CmoCh05G006050 vs. TrEMBL
Match: A0A0A0LP30_CUCSA (Poly(A) polymerase beta OS=Cucumis sativus GN=Csa_2G373380 PE=4 SV=1)

HSP 1 Score: 1246.1 bits (3223), Expect = 0.0e+00
Identity = 642/846 (75.89%), Postives = 674/846 (79.67%), Query Frame = 1


Query: 1   MVGSDSSTAFHPAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSD ST       P +NYGVTKPISLAGP DADI RNIELEKFL+DS LYESKEEAAK
Sbjct: 1   MVGSDCSTGLPSVSHPVTNYGVTKPISLAGPMDADIHRNIELEKFLVDSELYESKEEAAK 60

Query: 61  REEVLGRIDQVQTFFTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMV 120
           REEVLGRIDQ                              IVK+WVKQLTLLRGYTEQMV
Sbjct: 61  REEVLGRIDQ------------------------------IVKSWVKQLTLLRGYTEQMV 120

Query: 121 EDANAVIFTFGSYRLGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGP 180
           EDANAVIFTFGSYRLG                             VHGPGSDIDTLCVGP
Sbjct: 121 EDANAVIFTFGSYRLG-----------------------------VHGPGSDIDTLCVGP 180

Query: 181 SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEE 240
           SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKF+GISIDLLYASIS+ VVPE+
Sbjct: 181 SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFLGISIDLLYASISLLVVPED 240

Query: 241 LNISHGSVLCNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT 300
           L+ISHGSVL NVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT
Sbjct: 241 LDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT 300

Query: 301 GFLGG---------VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD 360
           GFLGG         VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD
Sbjct: 301 GFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD 360

Query: 361 PRKNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSAL 420
           PR+NPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFR GN+ICEEID+SKAQWSAL
Sbjct: 361 PRRNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRYGNSICEEIDLSKAQWSAL 420

Query: 421 FEPYLFFEIYKNYLQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQ 480
           FEPYLFFE YKNYLQVDIIAADADDLLAWKGWVESRFRQLTLK                 
Sbjct: 421 FEPYLFFETYKNYLQVDIIAADADDLLAWKGWVESRFRQLTLK----------------- 480

Query: 481 IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE 540
           IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE
Sbjct: 481 IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE 540

Query: 541 INTYAFWKPGMDIHVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSGIT 600
           IN YAFWKPGMDI+VSHVRRKQLPTFVFPDGHKRAKP+RHEGQQ D VCADMLQDQSGIT
Sbjct: 541 INMYAFWKPGMDIYVSHVRRKQLPTFVFPDGHKRAKPLRHEGQQVDTVCADMLQDQSGIT 600

Query: 601 EKGKKRKSDHEETEMEKKQAFASQPAEESPMLETHGGGSDGKLPSLKSANADCYSEVWPS 660
           EKGKKRKSDHEE E EKKQA  S PAE+SPM E  GG  DGK PS K ANADC+ +VW S
Sbjct: 601 EKGKKRKSDHEEEEKEKKQALISPPAEQSPMPEFFGGDPDGKWPSSKFANADCHLKVWSS 660

Query: 661 FEQLDSRMDTDGNGMDIPSLTKETGPTMDQAEL-AKVMEGSSSTKEVPDLYQGGLSKSEE 720
           FEQ  SR DT+GNG DI +LTKETG T DQ  L AK +E SSS KEVPDLY+G +S S+E
Sbjct: 661 FEQPVSRTDTNGNGTDIATLTKETGSTGDQLGLPAKEIEESSSRKEVPDLYKGSISTSKE 720

Query: 721 ALQIEMNQEKIEGLASNMSGSAQTVAIRNFLHWTKDVVRIDSESANPFGQTTGEESTQVD 780
           ALQI  ++E ++GLA NM+GS QTV+IR  LHWTKDVVRIDSES N +G+ TG ESTQV+
Sbjct: 721 ALQIGTDRENVDGLAPNMNGSVQTVSIRTLLHWTKDVVRIDSESGNTYGEMTGGESTQVE 746

Query: 781 FQPNCNAHNLSCKFDYIGLQIIANGSKRSGILEIVSRGNDSRTDPELALENGSVVTGRVF 837
           FQPNCN HNLSCK                        GNDSRTDP+LAL+NGSVVTGRV 
Sbjct: 781 FQPNCNTHNLSCK------------------------GNDSRTDPDLALDNGSVVTGRVS 746

[Close]

BLAST of CmoCh05G006050 vs. TrEMBL
Match: A0A061GKW6_THECC (Poly(A) polymerase 1 isoform 2 OS=Theobroma cacao GN=TCM_037229 PE=4 SV=1)

HSP 1 Score: 876.3 bits (2263), Expect = 3.2e-251
Identity = 491/862 (56.96%), Postives = 566/862 (65.66%), Query Frame = 1


Query: 15  QPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQVQTF 74
           Q    YG+TKPISLAGP++AD+QRN ELEKFLI+SGLYESKEEA KREEVLG I++    
Sbjct: 15  QSLKKYGITKPISLAGPSEADVQRNTELEKFLIESGLYESKEEAVKREEVLGHINE---- 74

Query: 75  FTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYR 134
                                     IVK+WVKQLT  RGYT+QMVE+ANAVIFTFGSY 
Sbjct: 75  --------------------------IVKSWVKQLTRQRGYTDQMVEEANAVIFTFGSYC 134

Query: 135 LGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGPSYVNR-EDFFIILH 194
           LG                             VHGPG+DIDTLC+GPSYVNR EDFFIILH
Sbjct: 135 LG-----------------------------VHGPGADIDTLCIGPSYVNREEDFFIILH 194

Query: 195 NILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEELNISHGSVLCNVD 254
           +ILAEMEEVT+LQPVPDAHVPVM+FKF GISIDLLYASIS+ VVP+ L+ISHGSVL NVD
Sbjct: 195 DILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPDNLDISHGSVLHNVD 254

Query: 255 EQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGG-------- 314
           EQTVRSLNGCRVADQIL+LVPNVEHFR TLRCLKFWAKRRGVYSNVTGFLGG        
Sbjct: 255 EQTVRSLNGCRVADQILKLVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVA 314

Query: 315 -VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRKNPRDRFHLMP 374
            VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEE+ELGFPVWDPRKNPRDRFH MP
Sbjct: 315 RVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEDELGFPVWDPRKNPRDRFHHMP 374

Query: 375 IITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSALFEPYLFFEIYKNY 434
           IITPAYPCMNSSYNVS STLRVMMEQF+CGN ICEEI+++K+QW+ALFEPYLFFE YKNY
Sbjct: 375 IITPAYPCMNSSYNVSISTLRVMMEQFQCGNRICEEIELNKSQWNALFEPYLFFEAYKNY 434

Query: 435 LQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQIERDTRGMLQCHP 494
           LQVDI++A+ADDLLAWKGWVESR RQLTLK                 IERDT GMLQCHP
Sbjct: 435 LQVDIVSAEADDLLAWKGWVESRLRQLTLK-----------------IERDTNGMLQCHP 494

Query: 495 YPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQEINTYAFWKPGMDI 554
           YP EY DTSK   HCAFFMGLQRKEG+ GQ GQQFDIRGTVDEFRQEI+ Y +WKPGMDI
Sbjct: 495 YPNEYVDTSKQFPHCAFFMGLQRKEGVSGQEGQQFDIRGTVDEFRQEISMYMYWKPGMDI 554

Query: 555 HVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSGITEKGKKRKSDHE-- 614
           +VSHVRR+QLP FVFPDG+KR +  RH GQQ   +C D+ + QSG  E+  KRK + E  
Sbjct: 555 YVSHVRRRQLPAFVFPDGYKRPRSSRHPGQQTGKICEDITRSQSGSVERQIKRKHEDEAF 614

Query: 615 ETEMEK--KQAFASQPAEESPMLE---THGGG----SDGKLPSLK---SANADCYSEVWP 674
           + +M+K  K++  S    ES   E   +  GG    SDG++ +L+   + + D  S +  
Sbjct: 615 DEKMDKPDKRSSISPQRLESVSPESSASRSGGTSHISDGQMVTLERPTTWDVDSNSVLRQ 674

Query: 675 SFEQLDSRMDTDG------NGMDIPSLTKETGPTMDQAELAKVMEGSSSTKEV--PDLYQ 734
           S   LDS     G        +D  SLT     ++D      V+    S +++  P L Q
Sbjct: 675 SSGLLDSEKRNVGISIQQARTVDQGSLTLSGQTSLDVVHNLSVVRNVESAEQMGEPFLRQ 734

Query: 735 GGLSKSE-------EALQIEMNQEKIEGLASNMSGSAQTVAIRNFLHWTKDVVRIDSESA 794
              S  E       E  +  +NQEK    +S     A+T + R  L+W    V +D E  
Sbjct: 735 ESHSPCEVPDSELRETCKTGVNQEKTGDYSSAYMNDAETGSSRRILNWKGGGVGVDQEVV 776

Query: 795 NPFGQTTGEESTQVDFQPNCNAHNLSCKFDYIGLQIIANGSKRSGILEIVSRGNDSRTDP 838
            P  QT   E  +  F  + NA NL+C+                        G     D 
Sbjct: 795 KPCNQTAVVEIAESVFGSSSNAQNLNCE------------------------GVVCSADL 776

[Close]

BLAST of CmoCh05G006050 vs. TrEMBL
Match: A0A061GK78_THECC (Poly(A) polymerase 1 isoform 3 OS=Theobroma cacao GN=TCM_037229 PE=4 SV=1)

HSP 1 Score: 876.3 bits (2263), Expect = 3.2e-251
Identity = 491/862 (56.96%), Postives = 566/862 (65.66%), Query Frame = 1


Query: 15  QPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQVQTF 74
           Q    YG+TKPISLAGP++AD+QRN ELEKFLI+SGLYESKEEA KREEVLG I++    
Sbjct: 15  QSLKKYGITKPISLAGPSEADVQRNTELEKFLIESGLYESKEEAVKREEVLGHINE---- 74

Query: 75  FTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYR 134
                                     IVK+WVKQLT  RGYT+QMVE+ANAVIFTFGSY 
Sbjct: 75  --------------------------IVKSWVKQLTRQRGYTDQMVEEANAVIFTFGSYC 134

Query: 135 LGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGPSYVNR-EDFFIILH 194
           LG                             VHGPG+DIDTLC+GPSYVNR EDFFIILH
Sbjct: 135 LG-----------------------------VHGPGADIDTLCIGPSYVNREEDFFIILH 194

Query: 195 NILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEELNISHGSVLCNVD 254
           +ILAEMEEVT+LQPVPDAHVPVM+FKF GISIDLLYASIS+ VVP+ L+ISHGSVL NVD
Sbjct: 195 DILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPDNLDISHGSVLHNVD 254

Query: 255 EQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGG-------- 314
           EQTVRSLNGCRVADQIL+LVPNVEHFR TLRCLKFWAKRRGVYSNVTGFLGG        
Sbjct: 255 EQTVRSLNGCRVADQILKLVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVA 314

Query: 315 -VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRKNPRDRFHLMP 374
            VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEE+ELGFPVWDPRKNPRDRFH MP
Sbjct: 315 RVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEDELGFPVWDPRKNPRDRFHHMP 374

Query: 375 IITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSALFEPYLFFEIYKNY 434
           IITPAYPCMNSSYNVS STLRVMMEQF+CGN ICEEI+++K+QW+ALFEPYLFFE YKNY
Sbjct: 375 IITPAYPCMNSSYNVSISTLRVMMEQFQCGNRICEEIELNKSQWNALFEPYLFFEAYKNY 434

Query: 435 LQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQIERDTRGMLQCHP 494
           LQVDI++A+ADDLLAWKGWVESR RQLTLK                 IERDT GMLQCHP
Sbjct: 435 LQVDIVSAEADDLLAWKGWVESRLRQLTLK-----------------IERDTNGMLQCHP 494

Query: 495 YPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQEINTYAFWKPGMDI 554
           YP EY DTSK   HCAFFMGLQRKEG+ GQ GQQFDIRGTVDEFRQEI+ Y +WKPGMDI
Sbjct: 495 YPNEYVDTSKQFPHCAFFMGLQRKEGVSGQEGQQFDIRGTVDEFRQEISMYMYWKPGMDI 554

Query: 555 HVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSGITEKGKKRKSDHE-- 614
           +VSHVRR+QLP FVFPDG+KR +  RH GQQ   +C D+ + QSG  E+  KRK + E  
Sbjct: 555 YVSHVRRRQLPAFVFPDGYKRPRSSRHPGQQTGKICEDITRSQSGSVERQIKRKHEDEAF 614

Query: 615 ETEMEK--KQAFASQPAEESPMLE---THGGG----SDGKLPSLK---SANADCYSEVWP 674
           + +M+K  K++  S    ES   E   +  GG    SDG++ +L+   + + D  S +  
Sbjct: 615 DEKMDKPDKRSSISPQRLESVSPESSASRSGGTSHISDGQMVTLERPTTWDVDSNSVLRQ 674

Query: 675 SFEQLDSRMDTDG------NGMDIPSLTKETGPTMDQAELAKVMEGSSSTKEV--PDLYQ 734
           S   LDS     G        +D  SLT     ++D      V+    S +++  P L Q
Sbjct: 675 SSGLLDSEKRNVGISIQQARTVDQGSLTLSGQTSLDVVHNLSVVRNVESAEQMGEPFLRQ 734

Query: 735 GGLSKSE-------EALQIEMNQEKIEGLASNMSGSAQTVAIRNFLHWTKDVVRIDSESA 794
              S  E       E  +  +NQEK    +S     A+T + R  L+W    V +D E  
Sbjct: 735 ESHSPCEVPDSELRETCKTGVNQEKTGDYSSAYMNDAETGSSRRILNWKGGGVGVDQEVV 776

Query: 795 NPFGQTTGEESTQVDFQPNCNAHNLSCKFDYIGLQIIANGSKRSGILEIVSRGNDSRTDP 838
            P  QT   E  +  F  + NA NL+C+                        G     D 
Sbjct: 795 KPCNQTAVVEIAESVFGSSSNAQNLNCE------------------------GVVCSADL 776

[Close]

BLAST of CmoCh05G006050 vs. TrEMBL
Match: A0A061GIW2_THECC (Poly(A) polymerase 1 isoform 5 OS=Theobroma cacao GN=TCM_037229 PE=4 SV=1)

HSP 1 Score: 876.3 bits (2263), Expect = 3.2e-251
Identity = 491/862 (56.96%), Postives = 566/862 (65.66%), Query Frame = 1


Query: 15  QPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQVQTF 74
           Q    YG+TKPISLAGP++AD+QRN ELEKFLI+SGLYESKEEA KREEVLG I++    
Sbjct: 15  QSLKKYGITKPISLAGPSEADVQRNTELEKFLIESGLYESKEEAVKREEVLGHINE---- 74

Query: 75  FTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYR 134
                                     IVK+WVKQLT  RGYT+QMVE+ANAVIFTFGSY 
Sbjct: 75  --------------------------IVKSWVKQLTRQRGYTDQMVEEANAVIFTFGSYC 134

Query: 135 LGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGPSYVNR-EDFFIILH 194
           LG                             VHGPG+DIDTLC+GPSYVNR EDFFIILH
Sbjct: 135 LG-----------------------------VHGPGADIDTLCIGPSYVNREEDFFIILH 194

Query: 195 NILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEELNISHGSVLCNVD 254
           +ILAEMEEVT+LQPVPDAHVPVM+FKF GISIDLLYASIS+ VVP+ L+ISHGSVL NVD
Sbjct: 195 DILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPDNLDISHGSVLHNVD 254

Query: 255 EQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGG-------- 314
           EQTVRSLNGCRVADQIL+LVPNVEHFR TLRCLKFWAKRRGVYSNVTGFLGG        
Sbjct: 255 EQTVRSLNGCRVADQILKLVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVA 314

Query: 315 -VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRKNPRDRFHLMP 374
            VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEE+ELGFPVWDPRKNPRDRFH MP
Sbjct: 315 RVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEDELGFPVWDPRKNPRDRFHHMP 374

Query: 375 IITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSALFEPYLFFEIYKNY 434
           IITPAYPCMNSSYNVS STLRVMMEQF+CGN ICEEI+++K+QW+ALFEPYLFFE YKNY
Sbjct: 375 IITPAYPCMNSSYNVSISTLRVMMEQFQCGNRICEEIELNKSQWNALFEPYLFFEAYKNY 434

Query: 435 LQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQIERDTRGMLQCHP 494
           LQVDI++A+ADDLLAWKGWVESR RQLTLK                 IERDT GMLQCHP
Sbjct: 435 LQVDIVSAEADDLLAWKGWVESRLRQLTLK-----------------IERDTNGMLQCHP 494

Query: 495 YPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQEINTYAFWKPGMDI 554
           YP EY DTSK   HCAFFMGLQRKEG+ GQ GQQFDIRGTVDEFRQEI+ Y +WKPGMDI
Sbjct: 495 YPNEYVDTSKQFPHCAFFMGLQRKEGVSGQEGQQFDIRGTVDEFRQEISMYMYWKPGMDI 554

Query: 555 HVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSGITEKGKKRKSDHE-- 614
           +VSHVRR+QLP FVFPDG+KR +  RH GQQ   +C D+ + QSG  E+  KRK + E  
Sbjct: 555 YVSHVRRRQLPAFVFPDGYKRPRSSRHPGQQTGKICEDITRSQSGSVERQIKRKHEDEAF 614

Query: 615 ETEMEK--KQAFASQPAEESPMLE---THGGG----SDGKLPSLK---SANADCYSEVWP 674
           + +M+K  K++  S    ES   E   +  GG    SDG++ +L+   + + D  S +  
Sbjct: 615 DEKMDKPDKRSSISPQRLESVSPESSASRSGGTSHISDGQMVTLERPTTWDVDSNSVLRQ 674

Query: 675 SFEQLDSRMDTDG------NGMDIPSLTKETGPTMDQAELAKVMEGSSSTKEV--PDLYQ 734
           S   LDS     G        +D  SLT     ++D      V+    S +++  P L Q
Sbjct: 675 SSGLLDSEKRNVGISIQQARTVDQGSLTLSGQTSLDVVHNLSVVRNVESAEQMGEPFLRQ 734

Query: 735 GGLSKSE-------EALQIEMNQEKIEGLASNMSGSAQTVAIRNFLHWTKDVVRIDSESA 794
              S  E       E  +  +NQEK    +S     A+T + R  L+W    V +D E  
Sbjct: 735 ESHSPCEVPDSELRETCKTGVNQEKTGDYSSAYMNDAETGSSRRILNWKGGGVGVDQEVV 776

Query: 795 NPFGQTTGEESTQVDFQPNCNAHNLSCKFDYIGLQIIANGSKRSGILEIVSRGNDSRTDP 838
            P  QT   E  +  F  + NA NL+C+                        G     D 
Sbjct: 795 KPCNQTAVVEIAESVFGSSSNAQNLNCE------------------------GVVCSADL 776

[Close]

BLAST of CmoCh05G006050 vs. TrEMBL
Match: A0A061GRQ3_THECC (Poly(A) polymerase 1 isoform 4 OS=Theobroma cacao GN=TCM_037229 PE=4 SV=1)

HSP 1 Score: 876.3 bits (2263), Expect = 3.2e-251
Identity = 491/862 (56.96%), Postives = 566/862 (65.66%), Query Frame = 1


Query: 15  QPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQVQTF 74
           Q    YG+TKPISLAGP++AD+QRN ELEKFLI+SGLYESKEEA KREEVLG I++    
Sbjct: 15  QSLKKYGITKPISLAGPSEADVQRNTELEKFLIESGLYESKEEAVKREEVLGHINE---- 74

Query: 75  FTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYR 134
                                     IVK+WVKQLT  RGYT+QMVE+ANAVIFTFGSY 
Sbjct: 75  --------------------------IVKSWVKQLTRQRGYTDQMVEEANAVIFTFGSYC 134

Query: 135 LGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGPSYVNR-EDFFIILH 194
           LG                             VHGPG+DIDTLC+GPSYVNR EDFFIILH
Sbjct: 135 LG-----------------------------VHGPGADIDTLCIGPSYVNREEDFFIILH 194

Query: 195 NILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEELNISHGSVLCNVD 254
           +ILAEMEEVT+LQPVPDAHVPVM+FKF GISIDLLYASIS+ VVP+ L+ISHGSVL NVD
Sbjct: 195 DILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPDNLDISHGSVLHNVD 254

Query: 255 EQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGG-------- 314
           EQTVRSLNGCRVADQIL+LVPNVEHFR TLRCLKFWAKRRGVYSNVTGFLGG        
Sbjct: 255 EQTVRSLNGCRVADQILKLVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVA 314

Query: 315 -VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRKNPRDRFHLMP 374
            VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEE+ELGFPVWDPRKNPRDRFH MP
Sbjct: 315 RVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEDELGFPVWDPRKNPRDRFHHMP 374

Query: 375 IITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSALFEPYLFFEIYKNY 434
           IITPAYPCMNSSYNVS STLRVMMEQF+CGN ICEEI+++K+QW+ALFEPYLFFE YKNY
Sbjct: 375 IITPAYPCMNSSYNVSISTLRVMMEQFQCGNRICEEIELNKSQWNALFEPYLFFEAYKNY 434

Query: 435 LQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQIERDTRGMLQCHP 494
           LQVDI++A+ADDLLAWKGWVESR RQLTLK                 IERDT GMLQCHP
Sbjct: 435 LQVDIVSAEADDLLAWKGWVESRLRQLTLK-----------------IERDTNGMLQCHP 494

Query: 495 YPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQEINTYAFWKPGMDI 554
           YP EY DTSK   HCAFFMGLQRKEG+ GQ GQQFDIRGTVDEFRQEI+ Y +WKPGMDI
Sbjct: 495 YPNEYVDTSKQFPHCAFFMGLQRKEGVSGQEGQQFDIRGTVDEFRQEISMYMYWKPGMDI 554

Query: 555 HVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSGITEKGKKRKSDHE-- 614
           +VSHVRR+QLP FVFPDG+KR +  RH GQQ   +C D+ + QSG  E+  KRK + E  
Sbjct: 555 YVSHVRRRQLPAFVFPDGYKRPRSSRHPGQQTGKICEDITRSQSGSVERQIKRKHEDEAF 614

Query: 615 ETEMEK--KQAFASQPAEESPMLE---THGGG----SDGKLPSLK---SANADCYSEVWP 674
           + +M+K  K++  S    ES   E   +  GG    SDG++ +L+   + + D  S +  
Sbjct: 615 DEKMDKPDKRSSISPQRLESVSPESSASRSGGTSHISDGQMVTLERPTTWDVDSNSVLRQ 674

Query: 675 SFEQLDSRMDTDG------NGMDIPSLTKETGPTMDQAELAKVMEGSSSTKEV--PDLYQ 734
           S   LDS     G        +D  SLT     ++D      V+    S +++  P L Q
Sbjct: 675 SSGLLDSEKRNVGISIQQARTVDQGSLTLSGQTSLDVVHNLSVVRNVESAEQMGEPFLRQ 734

Query: 735 GGLSKSE-------EALQIEMNQEKIEGLASNMSGSAQTVAIRNFLHWTKDVVRIDSESA 794
              S  E       E  +  +NQEK    +S     A+T + R  L+W    V +D E  
Sbjct: 735 ESHSPCEVPDSELRETCKTGVNQEKTGDYSSAYMNDAETGSSRRILNWKGGGVGVDQEVV 776

Query: 795 NPFGQTTGEESTQVDFQPNCNAHNLSCKFDYIGLQIIANGSKRSGILEIVSRGNDSRTDP 838
            P  QT   E  +  F  + NA NL+C+                        G     D 
Sbjct: 795 KPCNQTAVVEIAESVFGSSSNAQNLNCE------------------------GVVCSADL 776

[Close]

BLAST of CmoCh05G006050 vs. TAIR10
Match: AT4G32850.8 (AT4G32850.8 nuclear poly(a) polymerase)

HSP 1 Score: 786.2 bits (2029), Expect = 2.2e-227
Identity = 404/627 (64.43%), Postives = 458/627 (73.05%), Query Frame = 1


Query: 1   MVGSDSSTAFHPAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVG+ +     P      +YG+TKP+SLAGP+ ADI+RN+ELEK+L+D GLYESK++  +
Sbjct: 2   MVGTQNLGGSLPPLNSPKSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMR 61

Query: 61  REEVLGRIDQVQTFFTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMV 120
           REEVLGRIDQ                              IVK+WVKQLT  RGYT+QMV
Sbjct: 62  REEVLGRIDQ------------------------------IVKHWVKQLTQQRGYTDQMV 121

Query: 121 EDANAVIFTFGSYRLGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGP 180
           EDANAVIFTFGSYRLGV                             HGPG+DIDTLCVGP
Sbjct: 122 EDANAVIFTFGSYRLGV-----------------------------HGPGADIDTLCVGP 181

Query: 181 SYVNRE-DFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPE 240
           SYVNRE DFFIILH+ILAEMEEVT+L PVPDAHVPVM+FKF GI IDLLYASIS+ VVP+
Sbjct: 182 SYVNREEDFFIILHDILAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQ 241

Query: 241 ELNISHGSVLCNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNV 300
           +L+IS  SVLC VDE TVRSLNGCRVADQIL+LVPN EHFRTTLRCLK+WAK+RGVYSNV
Sbjct: 242 DLDISSSSVLCEVDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNV 301

Query: 301 TGFLGG---------VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVW 360
           TGFLGG         VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLC+IEE+ELGFPVW
Sbjct: 302 TGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVW 361

Query: 361 DPRKNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSA 420
           D RKN RDR+HLMPIITPAYPCMNSSYNVS STLRVM EQF+ GNNI +EI+++K  WS+
Sbjct: 362 DRRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSS 421

Query: 421 LFEPYLFFEIYKNYLQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFL 480
           LFE Y+FFE YKNYLQVDI+AADA+DLLAWKGWVESRFRQLTLK                
Sbjct: 422 LFEQYMFFEAYKNYLQVDIVAADAEDLLAWKGWVESRFRQLTLK---------------- 481

Query: 481 QIERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQ 540
            IERDT GML CHP P EY DT++   HCAFFMGLQR EG+ GQ  QQFDIRGTVDEFRQ
Sbjct: 482 -IERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGGQECQQFDIRGTVDEFRQ 541

Query: 541 EINTYAFWKPGMDIHVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSG- 600
           E+N Y FWKPGMD+ VSHVRR+QLP FVFP+G++R +  RH+         D     SG 
Sbjct: 542 EVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSRHQNLPGGKSGEDGSVSHSGS 552

Query: 601 ITEKGKKRKSDHE--ETEMEKKQAFAS 615
           + E+  KRK+D E  +   EK +  AS
Sbjct: 602 VVERHAKRKNDSEMMDVRPEKPEKRAS 552

[Close]

BLAST of CmoCh05G006050 vs. TAIR10
Match: AT2G25850.2 (AT2G25850.2 poly(A) polymerase 2)

HSP 1 Score: 780.8 bits (2015), Expect = 9.3e-226
Identity = 394/615 (64.07%), Postives = 455/615 (73.98%), Query Frame = 1


Query: 12  PAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQV 71
           P      +YG+T+P+S+AGP+ AD++RN+ELEKFL+D GLYESKEE  +REEV+ RIDQ 
Sbjct: 15  PVKASLKSYGITEPLSIAGPSAADVKRNLELEKFLVDEGLYESKEETMRREEVVVRIDQ- 74

Query: 72  QTFFTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMVEDANAVIFTFG 131
                                        IVK+WVKQLT  RGYT+QMVEDANAVIFTFG
Sbjct: 75  -----------------------------IVKHWVKQLTRQRGYTDQMVEDANAVIFTFG 134

Query: 132 SYRLGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGPSYVNR-EDFFI 191
           SYRLG                             VHGP +DIDTLCVGPSYVNR EDFFI
Sbjct: 135 SYRLG-----------------------------VHGPMADIDTLCVGPSYVNREEDFFI 194

Query: 192 ILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEELNISHGSVLC 251
              +ILAEMEEVT+LQPV DAHVPVM+FKF GISIDLLYASIS+ V+P++L+IS+ SVLC
Sbjct: 195 FFRDILAEMEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIPQDLDISNSSVLC 254

Query: 252 NVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGV---- 311
           +VDEQTVRSLNGCRVADQIL+LVPN EHFRTTLRCLK+WAK+RGVYSNVTGFLGGV    
Sbjct: 255 DVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWAL 314

Query: 312 -----CQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRKNPRDRFH 371
                CQ YPNAIPSMLVSRFFRVYTQWRWPNPVMLC+IEE++L FPVWDPRKN RDR+H
Sbjct: 315 LVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYH 374

Query: 372 LMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSALFEPYLFFEIY 431
           LMPIITPAYPCMNSSYNVS STLRVM EQF+ GN IC+EI+++K  WS+LF+ Y+FFE Y
Sbjct: 375 LMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAY 434

Query: 432 KNYLQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQIERDTRGMLQ 491
           KNYLQVD++AADA+DLLAWKGWVESRFRQLTLK                 IERDT GML 
Sbjct: 435 KNYLQVDVLAADAEDLLAWKGWVESRFRQLTLK-----------------IERDTNGMLM 494

Query: 492 CHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQEINTYAFWKPG 551
           CHP P EY DTSK   HCAFFMGLQR +G  GQ  QQFDIRGTVDEFRQE+N Y FW+PG
Sbjct: 495 CHPQPNEYVDTSKQFRHCAFFMGLQRADGFGGQECQQFDIRGTVDEFRQEVNMYMFWRPG 553

Query: 552 MDIHVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSGITEKGKKRKSDH 611
           MD+HVSHVRR+QLP+FVFP+G+KR++  RH+ QQ      + +   S   E+  KRK+D 
Sbjct: 555 MDVHVSHVRRRQLPSFVFPNGYKRSRQSRHQSQQCREPGDEGVGSLSDSVERYAKRKNDD 553

Query: 612 E--ETEMEKKQAFAS 615
           E   +  EK++  AS
Sbjct: 615 EIMNSRPEKREKRAS 553

[Close]

BLAST of CmoCh05G006050 vs. TAIR10
Match: AT1G17980.1 (AT1G17980.1 poly(A) polymerase 1)

HSP 1 Score: 618.2 bits (1593), Expect = 8.0e-177
Identity = 319/654 (48.78%), Postives = 405/654 (61.93%), Query Frame = 1


Query: 15  QPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQVQTF 74
           Q    +GV++PIS+ GPT+ D+ +  ELEK L D GLYESKEEA +REEVLG +DQ    
Sbjct: 6   QNGQRFGVSEPISMGGPTEFDVIKTRELEKHLQDVGLYESKEEAVRREEVLGILDQ---- 65

Query: 75  FTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYR 134
                                     IVK W+K ++  +G  +Q++ +ANA IFTFGSYR
Sbjct: 66  --------------------------IVKTWIKTISRAKGLNDQLLHEANAKIFTFGSYR 125

Query: 135 LGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGPSYVNRE-DFFIILH 194
           LG                             VHGPG+DIDTLCVGP +  RE DFF  L 
Sbjct: 126 LG-----------------------------VHGPGADIDTLCVGPRHATREGDFFGELQ 185

Query: 195 NILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEELNISHGSVLCNVD 254
            +L+EM EVT+L PVPDAHVP+M FK  G+SIDLLYA + + V+PE+L++S  S+L N D
Sbjct: 186 RMLSEMPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQNAD 245

Query: 255 EQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGG-------- 314
           EQTVRSLNGCRV DQILRLVPN+++FRTTLRC++FWAKRRGVYSNV+GFLGG        
Sbjct: 246 EQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVA 305

Query: 315 -VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRKNPRDRFHLMP 374
            +CQLYPNA+P++LVSRFFRV+ QW WPN + LCS +E  LG  VWDPR NP+DR H+MP
Sbjct: 306 RICQLYPNALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMP 365

Query: 375 IITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSALFEPYLFFEIYKNY 434
           IITPAYPCMNSSYNVS STLR+M  +F+ GN ICE ++ +KA W  LFEP+ FFE YKNY
Sbjct: 366 IITPAYPCMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFEAYKNY 425

Query: 435 LQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQIERDTRGMLQCHP 494
           LQ+DI AA+ DDL  WKGWVESR RQLTLK  R F+                  ML CHP
Sbjct: 426 LQIDISAANVDDLRKWKGWVESRLRQLTLKIERHFK------------------MLHCHP 485

Query: 495 YPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQEINTYAFWKPGMDI 554
           +P ++ DTS+P  HC++FMGLQRK+G+    G+QFDIR TV+EF+  +N Y  W PGM+I
Sbjct: 486 HPHDFQDTSRPL-HCSYFMGLQRKQGVPAAEGEQFDIRRTVEEFKHTVNAYTLWIPGMEI 545

Query: 555 HVSHVRRKQLPTFVFPDG------------HKRAKPVRHEGQQADPVCADMLQDQSGITE 614
            V H++R+ LP FVFP G              R    R+    + P       + S  ++
Sbjct: 546 SVGHIKRRSLPNFVFPGGVRPSHTSKGTWDSNRRSEHRNSSTSSAPAATTTTTEMSSESK 581

Query: 615 KGKKRKSDHEETEMEKKQAFASQP------AEESPMLETHGGGSDGKLPSLKSA 641
            G     D ++ +    +    QP      A   P+    GG  +  + S+ S+
Sbjct: 606 AGSNSPVDGKKRKWGDSETLTDQPRNSKHIAVSVPVENCEGGSPNPSVGSICSS 581

[Close]

BLAST of CmoCh05G006050 vs. TAIR10
Match: AT3G06560.1 (AT3G06560.1 poly(A) polymerase 3)

HSP 1 Score: 242.3 bits (617), Expect = 1.2e-63
Identity = 163/545 (29.91%), Postives = 248/545 (45.50%), Query Frame = 1


Query: 35  DIQRNIELEKFLIDSGLYESKEEAAKREEVLGRIDQVQTFFTSIGIVLSSQLEQNSVLIG 94
           D + +I L + +++ GL  S E+  KR  V+ ++ +                        
Sbjct: 14  DDESSISLRQLMVNEGLIPSLEDEVKRRGVINQLRK------------------------ 73

Query: 95  DESEILIVKNWVKQLTLLRGYTEQMVEDANAVIFTFGSYRLGVSIIFDLVFGEKSLLLYA 154
                 IV  WVK +       +  ++  NA I  +GSY LGV                 
Sbjct: 74  ------IVVRWVKNVAWQHRLPQNQIDATNATILPYGSYGLGV----------------- 133

Query: 155 TLRNFCWSHGLVHGPGSDIDTLCVGPSYVN-REDFFIILHNILAEMEEVTDLQPVPDAHV 214
                       +G  SDID LC+GP + +  EDFFI L ++L    EV++L  V DA V
Sbjct: 134 ------------YGSESDIDALCIGPFFASIAEDFFISLRDMLKSRREVSELHCVKDAKV 193

Query: 215 PVMRFKFMGISIDLLYASISVRVVPEELNISHGSVLCNVDEQTVRSLNGCRVADQILRLV 274
           P++RFKF GI +DL YA + V  +P  +++ +   L ++DE + + L+G R    IL+LV
Sbjct: 194 PLIRFKFDGILVDLPYAQLRVLSIPNNVDVLNPFFLRDIDETSWKILSGVRANKCILQLV 253

Query: 275 PNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGG---------VCQLYPNAIPSMLVSRFFR 334
           P++E F++ LRC+K WAKRRGVY N+ GFLGG         VC   PNA  S L++ FF 
Sbjct: 254 PSLELFQSLLRCVKLWAKRRGVYGNLNGFLGGVHMAILAAFVCGYQPNATLSSLLANFFY 313

Query: 335 VYTQWRWPNPVMLCSIEENELGFPVWDPRKNPRDRFHLMPIITPAYPCMNSSYNVSTSTL 394
            +  W+WP PV+L        G P             LMPI  P       +  ++ ST 
Sbjct: 314 TFAHWQWPTPVVLLEDTYPSTGAPP-----------GLMPIQLPCGSHQYCNSTITRSTF 373

Query: 395 RVMMEQFRCGNNICEEIDMSKAQWSALFEPYLFFEIYKNYLQVDIIAADADDLLAWKGWV 454
             ++ +F  G+N+ ++       W  LFE Y +   Y  + ++ + AA+ +DL  W GWV
Sbjct: 374 YKIVAEFLLGHNLTKDYLKLNFSWKDLFELYPYANTYTWFTKIHLSAANQEDLSDWVGWV 433

Query: 455 ESRFRQLTLKSWRVFQEPDRFYFSFLQIERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMG 514
           +SRFR L +K   V+                  G+  C P P EY +T     +  F+ G
Sbjct: 434 KSRFRCLLIKIEEVY------------------GI--CDPNPTEYVETYTKQPNIVFYWG 462

Query: 515 LQRKEGLRGQGGQQFDIRGTVDEFRQEINTYAFWKPGMDIHVSHVRRKQLPTFVFPDGHK 570
           LQ +           DI     +F + +N+ +F      I ++ V+  QLP       + 
Sbjct: 494 LQLRT------INVSDIESVKIDFLKNVNSGSFRGTVGRIQLTLVKASQLPKNGECGSNN 462

[Close]

BLAST of CmoCh05G006050 vs. NCBI nr
Match: gi|778671979|ref|XP_011649721.1| (PREDICTED: nuclear poly(A) polymerase 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 1246.1 bits (3223), Expect = 0.0e+00
Identity = 642/846 (75.89%), Postives = 674/846 (79.67%), Query Frame = 1


Query: 1   MVGSDSSTAFHPAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSD ST       P +NYGVTKPISLAGP DADI RNIELEKFL+DS LYESKEEAAK
Sbjct: 1   MVGSDCSTGLPSVSHPVTNYGVTKPISLAGPMDADIHRNIELEKFLVDSELYESKEEAAK 60

Query: 61  REEVLGRIDQVQTFFTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMV 120
           REEVLGRIDQ                              IVK+WVKQLTLLRGYTEQMV
Sbjct: 61  REEVLGRIDQ------------------------------IVKSWVKQLTLLRGYTEQMV 120

Query: 121 EDANAVIFTFGSYRLGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGP 180
           EDANAVIFTFGSYRLG                             VHGPGSDIDTLCVGP
Sbjct: 121 EDANAVIFTFGSYRLG-----------------------------VHGPGSDIDTLCVGP 180

Query: 181 SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEE 240
           SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKF+GISIDLLYASIS+ VVPE+
Sbjct: 181 SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFLGISIDLLYASISLLVVPED 240

Query: 241 LNISHGSVLCNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT 300
           L+ISHGSVL NVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT
Sbjct: 241 LDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT 300

Query: 301 GFLGG---------VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD 360
           GFLGG         VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD
Sbjct: 301 GFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD 360

Query: 361 PRKNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSAL 420
           PR+NPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFR GN+ICEEID+SKAQWSAL
Sbjct: 361 PRRNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRYGNSICEEIDLSKAQWSAL 420

Query: 421 FEPYLFFEIYKNYLQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQ 480
           FEPYLFFE YKNYLQVDIIAADADDLLAWKGWVESRFRQLTLK                 
Sbjct: 421 FEPYLFFETYKNYLQVDIIAADADDLLAWKGWVESRFRQLTLK----------------- 480

Query: 481 IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE 540
           IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE
Sbjct: 481 IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE 540

Query: 541 INTYAFWKPGMDIHVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSGIT 600
           IN YAFWKPGMDI+VSHVRRKQLPTFVFPDGHKRAKP+RHEGQQ D VCADMLQDQSGIT
Sbjct: 541 INMYAFWKPGMDIYVSHVRRKQLPTFVFPDGHKRAKPLRHEGQQVDTVCADMLQDQSGIT 600

Query: 601 EKGKKRKSDHEETEMEKKQAFASQPAEESPMLETHGGGSDGKLPSLKSANADCYSEVWPS 660
           EKGKKRKSDHEE E EKKQA  S PAE+SPM E  GG  DGK PS K ANADC+ +VW S
Sbjct: 601 EKGKKRKSDHEEEEKEKKQALISPPAEQSPMPEFFGGDPDGKWPSSKFANADCHLKVWSS 660

Query: 661 FEQLDSRMDTDGNGMDIPSLTKETGPTMDQAEL-AKVMEGSSSTKEVPDLYQGGLSKSEE 720
           FEQ  SR DT+GNG DI +LTKETG T DQ  L AK +E SSS KEVPDLY+G +S S+E
Sbjct: 661 FEQPVSRTDTNGNGTDIATLTKETGSTGDQLGLPAKEIEESSSRKEVPDLYKGSISTSKE 720

Query: 721 ALQIEMNQEKIEGLASNMSGSAQTVAIRNFLHWTKDVVRIDSESANPFGQTTGEESTQVD 780
           ALQI  ++E ++GLA NM+GS QTV+IR  LHWTKDVVRIDSES N +G+ TG ESTQV+
Sbjct: 721 ALQIGTDRENVDGLAPNMNGSVQTVSIRTLLHWTKDVVRIDSESGNTYGEMTGGESTQVE 746

Query: 781 FQPNCNAHNLSCKFDYIGLQIIANGSKRSGILEIVSRGNDSRTDPELALENGSVVTGRVF 837
           FQPNCN HNLSCK                        GNDSRTDP+LAL+NGSVVTGRV 
Sbjct: 781 FQPNCNTHNLSCK------------------------GNDSRTDPDLALDNGSVVTGRVS 746

[Close]

BLAST of CmoCh05G006050 vs. NCBI nr
Match: gi|778671968|ref|XP_011649717.1| (PREDICTED: nuclear poly(A) polymerase 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 1246.1 bits (3223), Expect = 0.0e+00
Identity = 642/846 (75.89%), Postives = 674/846 (79.67%), Query Frame = 1


Query: 1   MVGSDSSTAFHPAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSD ST       P +NYGVTKPISLAGP DADI RNIELEKFL+DS LYESKEEAAK
Sbjct: 1   MVGSDCSTGLPSVSHPVTNYGVTKPISLAGPMDADIHRNIELEKFLVDSELYESKEEAAK 60

Query: 61  REEVLGRIDQVQTFFTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMV 120
           REEVLGRIDQ                              IVK+WVKQLTLLRGYTEQMV
Sbjct: 61  REEVLGRIDQ------------------------------IVKSWVKQLTLLRGYTEQMV 120

Query: 121 EDANAVIFTFGSYRLGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGP 180
           EDANAVIFTFGSYRLG                             VHGPGSDIDTLCVGP
Sbjct: 121 EDANAVIFTFGSYRLG-----------------------------VHGPGSDIDTLCVGP 180

Query: 181 SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEE 240
           SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKF+GISIDLLYASIS+ VVPE+
Sbjct: 181 SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFLGISIDLLYASISLLVVPED 240

Query: 241 LNISHGSVLCNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT 300
           L+ISHGSVL NVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT
Sbjct: 241 LDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT 300

Query: 301 GFLGG---------VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD 360
           GFLGG         VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD
Sbjct: 301 GFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD 360

Query: 361 PRKNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSAL 420
           PR+NPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFR GN+ICEEID+SKAQWSAL
Sbjct: 361 PRRNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRYGNSICEEIDLSKAQWSAL 420

Query: 421 FEPYLFFEIYKNYLQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQ 480
           FEPYLFFE YKNYLQVDIIAADADDLLAWKGWVESRFRQLTLK                 
Sbjct: 421 FEPYLFFETYKNYLQVDIIAADADDLLAWKGWVESRFRQLTLK----------------- 480

Query: 481 IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE 540
           IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE
Sbjct: 481 IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE 540

Query: 541 INTYAFWKPGMDIHVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSGIT 600
           IN YAFWKPGMDI+VSHVRRKQLPTFVFPDGHKRAKP+RHEGQQ D VCADMLQDQSGIT
Sbjct: 541 INMYAFWKPGMDIYVSHVRRKQLPTFVFPDGHKRAKPLRHEGQQVDTVCADMLQDQSGIT 600

Query: 601 EKGKKRKSDHEETEMEKKQAFASQPAEESPMLETHGGGSDGKLPSLKSANADCYSEVWPS 660
           EKGKKRKSDHEE E EKKQA  S PAE+SPM E  GG  DGK PS K ANADC+ +VW S
Sbjct: 601 EKGKKRKSDHEEEEKEKKQALISPPAEQSPMPEFFGGDPDGKWPSSKFANADCHLKVWSS 660

Query: 661 FEQLDSRMDTDGNGMDIPSLTKETGPTMDQAEL-AKVMEGSSSTKEVPDLYQGGLSKSEE 720
           FEQ  SR DT+GNG DI +LTKETG T DQ  L AK +E SSS KEVPDLY+G +S S+E
Sbjct: 661 FEQPVSRTDTNGNGTDIATLTKETGSTGDQLGLPAKEIEESSSRKEVPDLYKGSISTSKE 720

Query: 721 ALQIEMNQEKIEGLASNMSGSAQTVAIRNFLHWTKDVVRIDSESANPFGQTTGEESTQVD 780
           ALQI  ++E ++GLA NM+GS QTV+IR  LHWTKDVVRIDSES N +G+ TG ESTQV+
Sbjct: 721 ALQIGTDRENVDGLAPNMNGSVQTVSIRTLLHWTKDVVRIDSESGNTYGEMTGGESTQVE 746

Query: 781 FQPNCNAHNLSCKFDYIGLQIIANGSKRSGILEIVSRGNDSRTDPELALENGSVVTGRVF 837
           FQPNCN HNLSCK                        GNDSRTDP+LAL+NGSVVTGRV 
Sbjct: 781 FQPNCNTHNLSCK------------------------GNDSRTDPDLALDNGSVVTGRVS 746

[Close]

BLAST of CmoCh05G006050 vs. NCBI nr
Match: gi|778671986|ref|XP_011649723.1| (PREDICTED: nuclear poly(A) polymerase 4 isoform X3 [Cucumis sativus])

HSP 1 Score: 1246.1 bits (3223), Expect = 0.0e+00
Identity = 642/846 (75.89%), Postives = 674/846 (79.67%), Query Frame = 1


Query: 1   MVGSDSSTAFHPAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSD ST       P +NYGVTKPISLAGP DADI RNIELEKFL+DS LYESKEEAAK
Sbjct: 1   MVGSDCSTGLPSVSHPVTNYGVTKPISLAGPMDADIHRNIELEKFLVDSELYESKEEAAK 60

Query: 61  REEVLGRIDQVQTFFTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMV 120
           REEVLGRIDQ                              IVK+WVKQLTLLRGYTEQMV
Sbjct: 61  REEVLGRIDQ------------------------------IVKSWVKQLTLLRGYTEQMV 120

Query: 121 EDANAVIFTFGSYRLGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGP 180
           EDANAVIFTFGSYRLG                             VHGPGSDIDTLCVGP
Sbjct: 121 EDANAVIFTFGSYRLG-----------------------------VHGPGSDIDTLCVGP 180

Query: 181 SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEE 240
           SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKF+GISIDLLYASIS+ VVPE+
Sbjct: 181 SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFLGISIDLLYASISLLVVPED 240

Query: 241 LNISHGSVLCNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT 300
           L+ISHGSVL NVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT
Sbjct: 241 LDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT 300

Query: 301 GFLGG---------VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD 360
           GFLGG         VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD
Sbjct: 301 GFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD 360

Query: 361 PRKNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSAL 420
           PR+NPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFR GN+ICEEID+SKAQWSAL
Sbjct: 361 PRRNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRYGNSICEEIDLSKAQWSAL 420

Query: 421 FEPYLFFEIYKNYLQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQ 480
           FEPYLFFE YKNYLQVDIIAADADDLLAWKGWVESRFRQLTLK                 
Sbjct: 421 FEPYLFFETYKNYLQVDIIAADADDLLAWKGWVESRFRQLTLK----------------- 480

Query: 481 IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE 540
           IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE
Sbjct: 481 IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE 540

Query: 541 INTYAFWKPGMDIHVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSGIT 600
           IN YAFWKPGMDI+VSHVRRKQLPTFVFPDGHKRAKP+RHEGQQ D VCADMLQDQSGIT
Sbjct: 541 INMYAFWKPGMDIYVSHVRRKQLPTFVFPDGHKRAKPLRHEGQQVDTVCADMLQDQSGIT 600

Query: 601 EKGKKRKSDHEETEMEKKQAFASQPAEESPMLETHGGGSDGKLPSLKSANADCYSEVWPS 660
           EKGKKRKSDHEE E EKKQA  S PAE+SPM E  GG  DGK PS K ANADC+ +VW S
Sbjct: 601 EKGKKRKSDHEEEEKEKKQALISPPAEQSPMPEFFGGDPDGKWPSSKFANADCHLKVWSS 660

Query: 661 FEQLDSRMDTDGNGMDIPSLTKETGPTMDQAEL-AKVMEGSSSTKEVPDLYQGGLSKSEE 720
           FEQ  SR DT+GNG DI +LTKETG T DQ  L AK +E SSS KEVPDLY+G +S S+E
Sbjct: 661 FEQPVSRTDTNGNGTDIATLTKETGSTGDQLGLPAKEIEESSSRKEVPDLYKGSISTSKE 720

Query: 721 ALQIEMNQEKIEGLASNMSGSAQTVAIRNFLHWTKDVVRIDSESANPFGQTTGEESTQVD 780
           ALQI  ++E ++GLA NM+GS QTV+IR  LHWTKDVVRIDSES N +G+ TG ESTQV+
Sbjct: 721 ALQIGTDRENVDGLAPNMNGSVQTVSIRTLLHWTKDVVRIDSESGNTYGEMTGGESTQVE 746

Query: 781 FQPNCNAHNLSCKFDYIGLQIIANGSKRSGILEIVSRGNDSRTDPELALENGSVVTGRVF 837
           FQPNCN HNLSCK                        GNDSRTDP+LAL+NGSVVTGRV 
Sbjct: 781 FQPNCNTHNLSCK------------------------GNDSRTDPDLALDNGSVVTGRVS 746

[Close]

BLAST of CmoCh05G006050 vs. NCBI nr
Match: gi|659088469|ref|XP_008444997.1| (PREDICTED: poly(A) polymerase pla1 isoform X3 [Cucumis melo])

HSP 1 Score: 1245.7 bits (3222), Expect = 0.0e+00
Identity = 648/846 (76.60%), Postives = 671/846 (79.31%), Query Frame = 1


Query: 1   MVGSDSSTAFHPAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSD ST       PA+NYGVTKPISLAGPTDADI RNIELEKFL+DSGLYESKEEAAK
Sbjct: 1   MVGSDCSTGLPSVSHPATNYGVTKPISLAGPTDADIHRNIELEKFLVDSGLYESKEEAAK 60

Query: 61  REEVLGRIDQVQTFFTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMV 120
           REEVLGRIDQ                              IVKNWVKQLTLLRGYTEQMV
Sbjct: 61  REEVLGRIDQ------------------------------IVKNWVKQLTLLRGYTEQMV 120

Query: 121 EDANAVIFTFGSYRLGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGP 180
           EDANAVIFTFGSYRLG                             VHGPGSDIDTLCVGP
Sbjct: 121 EDANAVIFTFGSYRLG-----------------------------VHGPGSDIDTLCVGP 180

Query: 181 SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEE 240
           SYVNREDFFIILH+ILAEMEEVTDLQPVPDAHVPVMRFKF+GISIDLLYASIS+ VVPE+
Sbjct: 181 SYVNREDFFIILHDILAEMEEVTDLQPVPDAHVPVMRFKFLGISIDLLYASISLLVVPED 240

Query: 241 LNISHGSVLCNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT 300
           L+ISHGSVL NVDEQTVRSLNGCRVADQILRLVPNV HFRTTLRCLKFWAKRRGVYSNVT
Sbjct: 241 LDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVGHFRTTLRCLKFWAKRRGVYSNVT 300

Query: 301 GFLGG---------VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD 360
           GFLGG         VCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD
Sbjct: 301 GFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD 360

Query: 361 PRKNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICEEIDMSKAQWSAL 420
           PR+NPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQF  GNNICEEID+SKAQWSAL
Sbjct: 361 PRRNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFCYGNNICEEIDLSKAQWSAL 420

Query: 421 FEPYLFFEIYKNYLQVDIIAADADDLLAWKGWVESRFRQLTLKSWRVFQEPDRFYFSFLQ 480
           FEPYLFFE YKNYLQVDIIAADADDLLAWKGWVESRFRQLTLK                 
Sbjct: 421 FEPYLFFETYKNYLQVDIIAADADDLLAWKGWVESRFRQLTLK----------------- 480

Query: 481 IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE 540
           IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE
Sbjct: 481 IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRGQGGQQFDIRGTVDEFRQE 540

Query: 541 INTYAFWKPGMDIHVSHVRRKQLPTFVFPDGHKRAKPVRHEGQQADPVCADMLQDQSGIT 600
           IN YAFWKPGMDI+VSHVRRKQLPTFVFPDGHKRAKP RHEGQQAD VCADMLQDQSGIT
Sbjct: 541 INMYAFWKPGMDIYVSHVRRKQLPTFVFPDGHKRAKPSRHEGQQADTVCADMLQDQSGIT 600

Query: 601 EKGKKRKSDHEETEMEKKQAFASQPAEESPMLETHGGGSDGKLPSLKSANADCYSEVWPS 660
           EKGKKRKSDHEE E EKKQAF SQPAE+SPM E  GG  DGKLPS K ANADC+ E W S
Sbjct: 601 EKGKKRKSDHEEEEKEKKQAFISQPAEQSPMPEFIGGEPDGKLPSSKFANADCHLEAWSS 660

Query: 661 FEQLDSRMDTDGNGMDIPSLTKETGPTMDQAE-LAKVMEGSSSTKEVPDLYQGGLSKSEE 720
           FEQ DSR DT+GNG DI +LTKETG T D+   LAK M GSS  K VPDLY+     SEE
Sbjct: 661 FEQPDSRTDTNGNGTDISTLTKETGSTGDEVGLLAKEMGGSSLRKGVPDLYKA----SEE 720

Query: 721 ALQIEMNQEKIEGLASNMSGSAQTVAIRNFLHWTKDVVRIDSESANPFGQTTGEESTQVD 780
           AL I  N E +EGLA +M+GSAQTVAIR  L WTKDVVRIDS+S N FG+ TG ESTQVD
Sbjct: 721 ALHIRTNGENVEGLAPSMNGSAQTVAIRTLLDWTKDVVRIDSKSGNTFGEMTGGESTQVD 742

Query: 781 FQPNCNAHNLSCKFDYIGLQIIANGSKRSGILEIVSRGNDSRTDPELALENGSVVTGRVF 837
           FQPNCN HNLSCK                        GNDSRTDP+LAL+NGSVVTGRV 
Sbjct: 781 FQPNCNTHNLSCK------------------------GNDSRTDPDLALDNGSVVTGRVS 742

[Close]

BLAST of CmoCh05G006050 vs. NCBI nr
Match: gi|659088467|ref|XP_008444996.1| (PREDICTED: poly(A) polymerase beta isoform X2 [Cucumis melo])

HSP 1 Score: 1230.3 bits (3182), Expect = 0.0e+00
Identity = 648/874 (74.14%), Postives = 671/874 (76.77%), Query Frame = 1


Query: 1   MVGSDSSTAFHPAPQPASNYGVTKPISLAGPTDADIQRNIELEKFLIDSGLYESKEEAAK 60
           MVGSD ST       PA+NYGVTKPISLAGPTDADI RNIELEKFL+DSGLYESKEEAAK
Sbjct: 1   MVGSDCSTGLPSVSHPATNYGVTKPISLAGPTDADIHRNIELEKFLVDSGLYESKEEAAK 60

Query: 61  REEVLGRIDQVQTFFTSIGIVLSSQLEQNSVLIGDESEILIVKNWVKQLTLLRGYTEQMV 120
           REEVLGRIDQ                              IVKNWVKQLTLLRGYTEQMV
Sbjct: 61  REEVLGRIDQ------------------------------IVKNWVKQLTLLRGYTEQMV 120

Query: 121 EDANAVIFTFGSYRLGVSIIFDLVFGEKSLLLYATLRNFCWSHGLVHGPGSDIDTLCVGP 180
           EDANAVIFTFGSYRLGV                             HGPGSDIDTLCVGP
Sbjct: 121 EDANAVIFTFGSYRLGV-----------------------------HGPGSDIDTLCVGP 180

Query: 181 SYVNREDFFIILHNILAEMEEVTDLQPVPDAHVPVMRFKFMGISIDLLYASISVRVVPEE 240
           SYVNREDFFIILH+ILAEMEEVTDLQPVPDAHVPVMRFKF+GISIDLLYASIS+ VVPE+
Sbjct: 181 SYVNREDFFIILHDILAEMEEVTDLQPVPDAHVPVMRFKFLGISIDLLYASISLLVVPED 240

Query: 241 LNISHGSVLCNVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVT 300
           L+ISHGSVL NVDEQTVRSLNGCRVADQILRLVPNV HFRTTLRCLKFWAKRRGVYSNVT
Sbjct: 241 LDISHGSVLYNVDEQTVRSLNGCRVADQILRLVPNVGHFRTTLRCLKFWAKRRGVYSNVT 300

Query: 301 GFLGGV---------CQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD 360
           GFLGGV         CQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD
Sbjct: 301 GFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWD 360

Query: 361 PRKNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFRCGNNICE------------ 420
           PR+NPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQF  GNNICE            
Sbjct: 361 PRRNPRDRFHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFCYGNNICEVRFFFIHHILNI 420

Query: 421 ----------------EIDMSKAQWSALFEPYLFFEIYKNYLQVDIIAADADDLLAWKGW 480
                           EID+SKAQWSALFEPYLFFE YKNYLQVDIIAADADDLLAWKGW
Sbjct: 421 SLLLIIFSLTSVSALQEIDLSKAQWSALFEPYLFFETYKNYLQVDIIAADADDLLAWKGW 480

Query: 481 VESRFRQLTLKSWRVFQEPDRFYFSFLQIERDTRGMLQCHPYPIEYSDTSKPCSHCAFFM 540
           VESRFRQLTLK                 IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFM
Sbjct: 481 VESRFRQLTLK-----------------IERDTRGMLQCHPYPIEYSDTSKPCSHCAFFM 540

Query: 541 GLQRKEGLRGQGGQQFDIRGTVDEFRQEINTYAFWKPGMDIHVSHVRRKQLPTFVFPDGH 600
           GLQRKEGLRGQGGQQFDIRGTVDEFRQEIN YAFWKPGMDI+VSHVRRKQLPTFVFPDGH
Sbjct: 541 GLQRKEGLRGQGGQQFDIRGTVDEFRQEINMYAFWKPGMDIYVSHVRRKQLPTFVFPDGH 600

Query: 601 KRAKPVRHEGQQADPVCADMLQDQSGITEKGKKRKSDHEETEMEKKQAFASQPAEESPML 660
           KRAKP RHEGQQAD VCADMLQDQSGITEKGKKRKSDHEE E EKKQAF SQPAE+SPM 
Sbjct: 601 KRAKPSRHEGQQADTVCADMLQDQSGITEKGKKRKSDHEEEEKEKKQAFISQPAEQSPMP 660

Query: 661 ETHGGGSDGKLPSLKSANADCYSEVWPSFEQLDSRMDTDGNGMDIPSLTKETGPTMDQAE 720
           E  GG  DGKLPS K ANADC+ E W SFEQ DSR DT+GNG DI +LTKETG T D+  
Sbjct: 661 EFIGGEPDGKLPSSKFANADCHLEAWSSFEQPDSRTDTNGNGTDISTLTKETGSTGDEVG 720

Query: 721 L-AKVMEGSSSTKEVPDLYQGGLSKSEEALQIEMNQEKIEGLASNMSGSAQTVAIRNFLH 780
           L AK M GSS  K VPDLY+     SEEAL I  N E +EGLA +M+GSAQTVAIR  L 
Sbjct: 721 LLAKEMGGSSLRKGVPDLYKA----SEEALHIRTNGENVEGLAPSMNGSAQTVAIRTLLD 770

Query: 781 WTKDVVRIDSESANPFGQTTGEESTQVDFQPNCNAHNLSCKFDYIGLQIIANGSKRSGIL 837
           WTKDVVRIDS+S N FG+ TG ESTQVDFQPNCN HNLSCK                   
Sbjct: 781 WTKDVVRIDSKSGNTFGEMTGGESTQVDFQPNCNTHNLSCK------------------- 770

The following BLAST results are available for this feature:

BLAST of CmoCh05G006050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAPS4_ARATH	3.9e-226	64.43	Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana GN=PAPS4 PE=1 SV=1	[more]
PAPS2_ARATH	1.6e-224	64.07	Nuclear poly(A) polymerase 2 OS=Arabidopsis thaliana GN=PAPS2 PE=1 SV=2	[more]
PAPS1_ARATH	1.4e-175	48.78	Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana GN=PAPS1 PE=1 SV=1	[more]
PAP_DICDI	6.1e-110	38.24	Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1	[more]
PAPOA_HUMAN	1.6e-102	38.95	Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4	[more]

BLAST of CmoCh05G006050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP30_CUCSA	0.0e+00	75.89	Poly(A) polymerase beta OS=Cucumis sativus GN=Csa_2G373380 PE=4 SV=1	[more]
A0A061GKW6_THECC	3.2e-251	56.96	Poly(A) polymerase 1 isoform 2 OS=Theobroma cacao GN=TCM_037229 PE=4 SV=1	[more]
A0A061GK78_THECC	3.2e-251	56.96	Poly(A) polymerase 1 isoform 3 OS=Theobroma cacao GN=TCM_037229 PE=4 SV=1	[more]
A0A061GIW2_THECC	3.2e-251	56.96	Poly(A) polymerase 1 isoform 5 OS=Theobroma cacao GN=TCM_037229 PE=4 SV=1	[more]
A0A061GRQ3_THECC	3.2e-251	56.96	Poly(A) polymerase 1 isoform 4 OS=Theobroma cacao GN=TCM_037229 PE=4 SV=1	[more]

BLAST of CmoCh05G006050 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32850.8	2.2e-227	64.43	nuclear poly(a) polymerase	[more]
AT2G25850.2	9.3e-226	64.07	poly(A) polymerase 2	[more]
AT1G17980.1	8.0e-177	48.78	poly(A) polymerase 1	[more]
AT3G06560.1	1.2e-63	29.91	poly(A) polymerase 3	[more]

BLAST of CmoCh05G006050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778671979\|ref\|XP_011649721.1\|	0.0e+00	75.89	PREDICTED: nuclear poly(A) polymerase 4 isoform X2 [Cucumis sativus]	[more]
gi\|778671968\|ref\|XP_011649717.1\|	0.0e+00	75.89	PREDICTED: nuclear poly(A) polymerase 4 isoform X1 [Cucumis sativus]	[more]
gi\|778671986\|ref\|XP_011649723.1\|	0.0e+00	75.89	PREDICTED: nuclear poly(A) polymerase 4 isoform X3 [Cucumis sativus]	[more]
gi\|659088469\|ref\|XP_008444997.1\|	0.0e+00	76.60	PREDICTED: poly(A) polymerase pla1 isoform X3 [Cucumis melo]	[more]
gi\|659088467\|ref\|XP_008444996.1\|	0.0e+00	74.14	PREDICTED: poly(A) polymerase beta isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007010	PolA_pol_RNA-bd_dom
IPR007012	PolA_pol_cen_dom
IPR011068	NuclTrfase_I-like_C
IPR014492	PolyA_polymerase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0004652	polynucleotide adenylyltransferase activity
GO:0016779	nucleotidyltransferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0043631	RNA polyadenylation
GO:0031123	RNA 3'-end processing

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031123	RNA 3'-end processing
biological_process	GO:0043631	RNA polyadenylation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004652	polynucleotide adenylyltransferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016779	nucleotidyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G006050.1	CmoCh05G006050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007010	Poly(A) polymerase, RNA-binding domain	GENE3D	G3DSA:3.30.70.590		coord: 417..559 score: 2.6
IPR007010	Poly(A) polymerase, RNA-binding domain	PFAM	PF04926	PAP_RNA-bind	coord: 417..453 score: 2.1E-7coord: 493..566 score: 4.
IPR007012	Poly(A) polymerase, central domain	PFAM	PF04928	PAP_central	coord: 21..414 score: 1.6
IPR011068	Nucleotidyltransferase, class I, C-terminal-like	unknown	SSF55003	PAP/Archaeal CCA-adding enzyme, C-terminal domain	coord: 417..559 score: 2.35
IPR014492	Poly(A) polymerase	PANTHER	PTHR10682	POLY A POLYMERASE	coord: 101..136 score: 0.0coord: 1..70 score: 0.0coord: 166..452 score: 0.0coord: 470..610 score:
None	No IPR available	GENE3D	G3DSA:1.10.1410.10		coord: 219..415 score: 1.0
None	No IPR available	PANTHER	PTHR10682:SF22	NUCLEAR POLY(A) POLYMERASE	coord: 1..70 score: 0.0coord: 470..610 score: 0.0coord: 166..452 score: 0.0coord: 101..136 score:
None	No IPR available	unknown	SSF81301	Nucleotidyltransferase	coord: 166..271 score: 8.99
None	No IPR available	unknown	SSF81631	PAP/OAS1 substrate-binding domain	coord: 274..414 score: 2.88

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G006050	Cucsa.161040	Cucumber (Gy14) v1	cgycmoB0461
CmoCh05G006050	CmaCh05G005800	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G006050	Cla022194	Watermelon (97103) v1	cmowmB746
CmoCh05G006050	Csa2G373380	Cucumber (Chinese Long) v2	cmocuB778
CmoCh05G006050	MELO3C011126	Melon (DHL92) v3.5.1	cmomeB719
CmoCh05G006050	ClCG08G012080	Watermelon (Charleston Gray)	cmowcgB713
CmoCh05G006050	CSPI02G22040	Wild cucumber (PI 183967)	cmocpiB783
CmoCh05G006050	Lsi08G010650	Bottle gourd (USVL1VR-Ls)	cmolsiB728
CmoCh05G006050	Cp4.1LG11g04980	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G006050	MELO3C011126.2	Melon (DHL92) v3.6.1	cmomedB816
CmoCh05G006050	CsaV3_2G030670	Cucumber (Chinese Long) v3	cmocucB0919
CmoCh05G006050	Cla97C08G155220	Watermelon (97103) v2	cmowmbB800
CmoCh05G006050	Bhi04G000715	Wax gourd	cmowgoB0946
CmoCh05G006050	CsGy2G021780	Cucumber (Gy14) v2	cgybcmoB239
CmoCh05G006050	Carg08269	Silver-seed gourd	carcmoB0087

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G006050	Melon (DHL92) v3.6.1	cmomedB820
CmoCh05G006050	Silver-seed gourd	carcmoB0877
CmoCh05G006050	Cucumber (Chinese Long) v3	cmocucB0929
CmoCh05G006050	Watermelon (97103) v2	cmowmbB779
CmoCh05G006050	Wax gourd	cmowgoB0961
CmoCh05G006050	Cucurbita moschata (Rifu)	cmocmoB031
CmoCh05G006050	Cucurbita moschata (Rifu)	cmocmoB151
CmoCh05G006050	Cucurbita maxima (Rimu)	cmacmoB060
CmoCh05G006050	Cucurbita maxima (Rimu)	cmacmoB194
CmoCh05G006050	Cucurbita pepo (Zucchini)	cmocpeB739
CmoCh05G006050	Cucurbita pepo (Zucchini)	cmocpeB747
CmoCh05G006050	Bottle gourd (USVL1VR-Ls)	cmolsiB718