CmoCh05G004080 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G004080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plant protein of unknown function (DUF247)
Location	Cmo_Chr05 : 1863759 .. 1864317 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTTTGATAAACACAAAGAAAGACGTGAGTTTACTTGAACAAGAAGGAATCATAATCAATGATAATGGAGGTTGTGATCAAGAAGTTGTAAAAATGTTTAACGATCTTTGCAAATTTGTTGAACAATCATACCATGACTGCTTCAACAATACCAACAAAGTTTTACATAAACACTGTAATAGAAGATGGAACAAGGCGAAAGGTTCACTTAAGCATAACTATTTCAATACACCATGGACTATTATCTCCATCATTATTGCAACCTTGCTCATTGTTATGACTCTCCTTCAAATTATATTCTCTGTTATATATGCATTTCTTAGTAAGCCAAAACATGATAGCATACGACGATTTTTTCCCTCGAGAAATGAGAGCAAGTGTATCAAATATGTCTCATTTTGATAAGCTACGCAAGATGAATAAAACCGTCTATATCCCTCAAGTCATTTCCATCAGCTCATTTCACCATCGTAGTCGAAAGAATTTGATAGCCAGAGAACAATATAAGTTTCGACATTGGAATAACTTTCTAAACCGTTTGGTGACAAGATGA

mRNA sequence

ATGGATGCTTTGATAAACACAAAGAAAGACGTGAGTTTACTTGAACAAGAAGGAATCATAATCAATGATAATGGAGGTTGTGATCAAGAAGTTGTAAAAATGTTTAACGATCTTTGCAAATTTGTTGAACAATCATACCATGACTGCTTCAACAATACCAACAAAGTTTTACATAAACACTGTAATAGAAGATGGAACAAGGCGAAAGTAAGCCAAAACATGATAGCATACGACGATTTTTTCCCTCGAGAAATGAGAGCAAGTGTATCAAATATGTCTCATTTTGATAAGCTACGCAAGATGAATAAAACCGTCTATATCCCTCAAGTCATTTCCATCAGCTCATTTCACCATCGTAGTCGAAAGAATTTGATAGCCAGAGAACAATATAAGTTTCGACATTGGAATAACTTTCTAAACCGTTTGGTGACAAGATGA

Coding sequence (CDS)

ATGGATGCTTTGATAAACACAAAGAAAGACGTGAGTTTACTTGAACAAGAAGGAATCATAATCAATGATAATGGAGGTTGTGATCAAGAAGTTGTAAAAATGTTTAACGATCTTTGCAAATTTGTTGAACAATCATACCATGACTGCTTCAACAATACCAACAAAGTTTTACATAAACACTGTAATAGAAGATGGAACAAGGCGAAAGTAAGCCAAAACATGATAGCATACGACGATTTTTTCCCTCGAGAAATGAGAGCAAGTGTATCAAATATGTCTCATTTTGATAAGCTACGCAAGATGAATAAAACCGTCTATATCCCTCAAGTCATTTCCATCAGCTCATTTCACCATCGTAGTCGAAAGAATTTGATAGCCAGAGAACAATATAAGTTTCGACATTGGAATAACTTTCTAAACCGTTTGGTGACAAGATGA

Homology

[Close]

BLAST of CmoCh05G004080 vs. TrEMBL
Match: A0A0A0LM96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.9e-14
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 1


Query: 1   MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHD-CFNNTNKVLHK 60
           MD LI+T+KDV+LL +E IIIND GG D+EV ++FN+LCKFV  S +D  FNN ++ L +
Sbjct: 336 MDYLISTEKDVNLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSPNDNYFNNISEGLRE 395

Query: 61  HCNRRWNKAKVS 72
           HC+R WNKAK S
Sbjct: 396 HCDRWWNKAKAS 407

[Close]

BLAST of CmoCh05G004080 vs. TrEMBL
Match: A0A0A0LSF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-13
Identity = 44/72 (61.11%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 1   MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDC-FNNTNKVLHK 60
           MD LINTKKDV LL   G+IIN+ GG  +EV K+FN L KF+  S     FN+ +K LHK
Sbjct: 403 MDNLINTKKDVRLLVNSGVIINNIGGSYKEVSKLFNKLGKFISGSPTSSEFNDISKDLHK 462

Query: 61  HCNRRWNKAKVS 72
           HCNRRWNKAK S
Sbjct: 463 HCNRRWNKAKAS 474

[Close]

BLAST of CmoCh05G004080 vs. TrEMBL
Match: A0A0A0LLX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.4e-13
Identity = 40/72 (55.56%), Postives = 56/72 (77.78%), Query Frame = 1


Query: 1   MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDC-FNNTNKVLHK 60
           MD LI+T+ DV+LL +E IIIND GG D+EV ++FN+LCKFV  S+++  FN+ ++ L K
Sbjct: 365 MDYLISTENDVNLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSFNNIYFNDISERLRK 424

Query: 61  HCNRRWNKAKVS 72
           HC+R WNKAK +
Sbjct: 425 HCDRWWNKAKAT 436

[Close]

BLAST of CmoCh05G004080 vs. TrEMBL
Match: A0A0A0LQ64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381630 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-11
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 1   MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQS-----YHDCFNNTNK 60
           MD LI+T+KDVSLLE+ GII+ND GG  +EV K+FN+L KFV +S     Y   F   +K
Sbjct: 401 MDYLISTEKDVSLLEKAGIIVNDIGGSHKEVSKLFNNLSKFVNRSDNNSEYFKKFQGISK 460

Query: 61  VLHKHCNRRWNKAKVS 72
            L +H +RRWNK K S
Sbjct: 461 ALCEHRDRRWNKLKAS 476

[Close]

BLAST of CmoCh05G004080 vs. TrEMBL
Match: A0A0A0LQ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 1   MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKH 60
           +D LI+T+KD+ LL + G+IIND GG D+EV ++FN L K V       F++T+K L  H
Sbjct: 366 LDDLISTEKDLCLLVKAGVIINDTGGSDKEVSELFNSLTKLVTTPLPSYFDDTSKALRVH 425

Query: 61  CNRRWNKAKVS 72
           C+  WNKAK S
Sbjct: 426 CDGSWNKAKAS 436

[Close]

BLAST of CmoCh05G004080 vs. NCBI nr
Match: gi|659088838|ref|XP_008445188.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 9.9e-15
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 1


Query: 1   MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHD-CFNNTNKVLHK 60
           MD LI T+KDV+LL +E IIIND GG D+EV ++FN+LCKFV  S +D  FN+T+K L  
Sbjct: 372 MDYLIITEKDVNLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSPNDNYFNDTSKALRD 431

Query: 61  HCNRRWNKAKVS 72
           HC+RRWNKAK S
Sbjct: 432 HCDRRWNKAKAS 443

[Close]

BLAST of CmoCh05G004080 vs. NCBI nr
Match: gi|700207809|gb|KGN62928.1| (hypothetical protein Csa_2G380080 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 1


Query: 1   MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHD-CFNNTNKVLHK 60
           MD LI+T+KDV+LL +E IIIND GG D+EV ++FN+LCKFV  S +D  FNN ++ L +
Sbjct: 336 MDYLISTEKDVNLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSPNDNYFNNISEGLRE 395

Query: 61  HCNRRWNKAKVS 72
           HC+R WNKAK S
Sbjct: 396 HCDRWWNKAKAS 407

[Close]

BLAST of CmoCh05G004080 vs. NCBI nr
Match: gi|449442190|ref|XP_004138865.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 3.2e-13
Identity = 44/72 (61.11%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 1   MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDC-FNNTNKVLHK 60
           MD LINTKKDV LL   G+IIN+ GG  +EV K+FN L KF+  S     FN+ +K LHK
Sbjct: 403 MDNLINTKKDVRLLVNSGVIINNIGGSYKEVSKLFNKLGKFISGSPTSSEFNDISKDLHK 462

Query: 61  HCNRRWNKAKVS 72
           HCNRRWNKAK S
Sbjct: 463 HCNRRWNKAKAS 474

[Close]

BLAST of CmoCh05G004080 vs. NCBI nr
Match: gi|778674379|ref|XP_011650197.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 9.2e-13
Identity = 40/72 (55.56%), Postives = 56/72 (77.78%), Query Frame = 1


Query: 1   MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDC-FNNTNKVLHK 60
           MD LI+T+ DV+LL +E IIIND GG D+EV ++FN+LCKFV  S+++  FN+ ++ L K
Sbjct: 365 MDYLISTENDVNLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSFNNIYFNDISERLRK 424

Query: 61  HCNRRWNKAKVS 72
           HC+R WNKAK +
Sbjct: 425 HCDRWWNKAKAT 436

[Close]

BLAST of CmoCh05G004080 vs. NCBI nr
Match: gi|659089573|ref|XP_008445583.1| (PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 6.0e-12
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 1   MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHD-CFNNTNKVLHK 60
           MD LI+T+KDV LL   G+IIN+ GG D+EV ++FN+L KFV Q      FN+ +K L K
Sbjct: 461 MDDLISTEKDVRLLVNSGVIINNIGGSDKEVSELFNNLGKFVNQCPSPYMFNHISKALRK 520

Query: 61  HCNRRWNKAKVS 72
           HCN RWNKAK S
Sbjct: 521 HCNGRWNKAKAS 532

The following BLAST results are available for this feature:

BLAST of CmoCh05G004080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G004080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM96_CUCSA	9.9e-14	59.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1	[more]
A0A0A0LSF4_CUCSA	2.2e-13	61.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1	[more]
A0A0A0LLX1_CUCSA	6.4e-13	55.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1	[more]
A0A0A0LQ64_CUCSA	3.5e-11	53.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381630 PE=4 SV=1	[more]
A0A0A0LQ57_CUCSA	1.8e-10	49.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1	[more]

BLAST of CmoCh05G004080 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh05G004080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088838\|ref\|XP_008445188.1\|	9.9e-15	62.50	PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]	[more]
gi\|700207809\|gb\|KGN62928.1\|	1.4e-13	59.72	hypothetical protein Csa_2G380080 [Cucumis sativus]	[more]
gi\|449442190\|ref\|XP_004138865.1\|	3.2e-13	61.11	PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus]	[more]
gi\|778674379\|ref\|XP_011650197.1\|	9.2e-13	55.56	PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus]	[more]
gi\|659089573\|ref\|XP_008445583.1\|	6.0e-12	56.94	PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G004080.1	CmoCh05G004080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 1..69 score: 2.7
None	No IPR available	PANTHER	PTHR31549	FAMILY NOT NAMED	coord: 1..67 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G004080	Lsi08G011910	Bottle gourd (USVL1VR-Ls)	cmolsiB730
CmoCh05G004080	Lsi08G011810	Bottle gourd (USVL1VR-Ls)	cmolsiB731

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G004080	Watermelon (97103) v2	cmowmbB802
CmoCh05G004080	Wax gourd	cmowgoB0940
CmoCh05G004080	Cucurbita moschata (Rifu)	cmocmoB156
CmoCh05G004080	Cucumber (Gy14) v1	cgycmoB0463
CmoCh05G004080	Cucurbita maxima (Rimu)	cmacmoB199
CmoCh05G004080	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G004080	Wild cucumber (PI 183967)	cmocpiB788
CmoCh05G004080	Cucumber (Chinese Long) v2	cmocuB785
CmoCh05G004080	Melon (DHL92) v3.5.1	cmomeB716
CmoCh05G004080	Watermelon (Charleston Gray)	cmowcgB716
CmoCh05G004080	Watermelon (97103) v1	cmowmB748
CmoCh05G004080	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G004080	Cucurbita pepo (Zucchini)	cmocpeB750
CmoCh05G004080	Cucumber (Gy14) v2	cgybcmoB244
CmoCh05G004080	Melon (DHL92) v3.6.1	cmomedB813
CmoCh05G004080	Silver-seed gourd	carcmoB0196
CmoCh05G004080	Silver-seed gourd	carcmoB1319
CmoCh05G004080	Cucumber (Chinese Long) v3	cmocucB0925