CmoCh05G003960 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGCTCTCCGCCTCTTCCAACACAAATGAGATCAGTCGAGCAGAAATAGAAAATGAAACTGGTACTTATGATCCAGTGGAAGCATCCATTAATCGTATTCTTCAACAATCTATTTCATTCTGTTCTGAAGGCGTTACCATTTACAAGGTTCCAGAACTTTTACGCAGCATCAAGCCAGAAGTTTATATGCCCACTACCATCTCTATCGGCCCTTTGCACTCTGATAGAAAAGATCTTGGAGCTAATTCATTCAAATCCATATTCCTTCGACTCTTCCTTGATTTCACCCAGCTCTCCGTGAACACGATTGTAGAAACAGTCCGAAATTTGGAACAAAGAGCTCGCTCATGTTATGCAAAATCCATGGAGATGAGCAGGGATGAATTTGTGGAGCTTCTGGTCTTGGATGCGTATTTCGTGGTCATGCATCTCATCCAATCGACGTGCTCACATTTGGATAGCCCAAAGATGACGGATTTCTTGCAATTCAATTATGAAACATCTCGTGATTTGATGCTGCTTGAAAACCAGCTTCCCTTCTTCCTTCTCCAATCTTTATACGACCTGGTCCTCCACTCAAAACCTTCACTGAATGATAAGAGTTTCATTCAAATTGTTAGTAATTATTTCTGCAACAACGATGACCAAGAGTTGCTTTTTATTGATATCAATTTACCTTTGGCTGCCAAAGTGGATCATTTTCTTGATTTAGTAAGAATACGTAAGCCTTGTTTGAATGGGGATATAACGTTCACTTCCTCAGGCATATTTTGGCCACCGAATGCCACCGAGCTTCACAAATGCGGCGTTATTTTTAGGACGGGGAGTGTCATAAAATTTAGTGACCAAGGTGGCTTTCTAGACTTCCGGAAATCAAGATATACGACGATTTTGAAAGGCGTATGAGGAACCTTATAGCTTATGAGCAATGCTATATTGGGTATGAGGATAAGAACTCGATGAGCAACTTTGCTGCGTTTATGCAGTTCTTGGTCCAGACAGACCAAGACGTCAAATTGCTAATTAAGGGAGGGATCATAGACAACAACTTGGGTAGTGTCAAAGAGGTTACCCAATTATTCAACAACCTCGGTAAGCACGTTTACCCTGGAGTCAACTACTACAGTTTTTATTGCAAAACAATGAAAGATTATTGCAAGCACCGCTGCCATCGTTGGATGACGTCGTTGCGGCGCAACTATTTCAGCACGCCATGGCTATGTGCTTCCTCCATTGCAGCCATCTTCCTCCTTGCCCTCACTTATACAAACCATCATAGCTATAGTCACTGGATTCAAACAAACTTCTTAATTGGAATTCAACAACTTATGTTTAAGTTGGGTCTATTAAATTTATATTCCAACTATCATGCTATTTTCGGTGTAATTGAGAACTCCATCTATTTGGATTCATAACTATGTGAAACAAACGCAGAAACAATGGTAATCCCAAATGAATCTAGGAAATATAAAAAGAAACTATACTTTGTACTTTCTTCTGACGAAAAAAAAATAAATAAAGCTTTTGATTTTGTTTATTTTATTTTAGTAAGATTGAATAAGAAACAATACTTTGTACTTTCTTCTTATGGAAAATAATAATAATAATAAATAAAGCTTTTGATTTTGTTTATTTTATTTTAGTAAGATTGAATAATTTTTTAGCAACAGTGTTATATCCTTCCAAAAATATGTTAATACAAGAAGAAAAGTTAGATAGATTTGTAAAATTCCACATCCATTAAAGTGGGGAATAAAACATTTCTTATAAATATGTGGAGACCCCTCTCTAACAGACGCGTTTTAAAATCGTGAGGCTAACGGAGATATGTAACGAGCTAAAATGGACAATATGTACTAGTATTTGGCTTTAGCTGTTACAAGATTGAATAACTTTTAGATCAATAAACCGTGGTCATCATATGCTTATACTAATCAATGAACATAGTCAGTCTCGTAGCAAACAAGACTAGTGCATTCATGACAACAAACCCTCTCTACAAACAACAAAGTCTATATTGTCCAGCAGTTGGAATAGAGGACCCCAATTTCTCAATCATATGGAATGGAAGACCCAACGTTTCATTGTCTAACCGTTATCTATGAAAATTTGATACAGGAATCTTTTAGATTCATGAATACTTTTGGTACAGTCATCACTTCGATTTATGAATCTATTTGGATTTATTTGGTTCATCCCCGTAGTCGTTTATAAATCATCTTTATTTATGTATGAGCGTTAGTATTATTATACTTATATAAAGGTCTATCTAGTATTGTTATGAGATAAAAAATCATTGTCATTTTGTATTTATCTAAAGGAAATTGAGAGGAATTTTATAAGTGAAATTTTGTAATAGGAAAGTGAGAGATATATTTATAAACATTTTGGTTAGAATGATTGGCTAACACTTGGATACAATAAATTTCTTTTTTTCTAAATTAGGTAAAATTTTCTCTCTTTATTCATTATGTCAGTAGGTGTGTGCCTATGACATTCTTGTTTCCGCTTTACTCCTCCATGCGATCATTTATGTAAGGCCCATCAATACAACTGTCTTAGGATATGTCGAAATAAGTGTTGAGTTTAAAGATAATTGATCAATAAAAAAAAAATTGATGGGACAACTATTGAGTTGGTCTCATAAATCTATCTTTCTTCTCTTTCAATTTTTTTCAGAATCAAGTCAAATTTCTTATTTTTGAATTTGAGGATTAAAATGCTAAACAGTTGCATTAAAGACATTTGAGGATCTAAAAGTATTCCAATCTTGTAATAGCCAAGTCCATCGATATTGTCTACTTTAACTTGTTGTGAATTGTCGTGAGTCTCACGCTTTTAAAACGCTTCTGTTACGGAGAGGTTTCCATACTCAAATAAAGAATGGTTGGTTCCATCATGCTTCAACATTGATGAAAATGATTTTATTATTCCTCCATTCATAAGTTAGCTCCAGAAGATTAAGAAATTAGAACAAATATCCAATATGTCTTGTCACTGAGTTATTGATATGGGCAGAAAAAATGTGAAATTACTTATAAAAGCTCAAATCATAATCCAAGGATGTGGATAAAAAAGTTTCATAATAGTTTAACAATCTTTCTAAATTTGTCACCGTCCAAAATAAGTTATATTCATAATCATAGTCTAACTTCATTTTAGGGCCATATGCATGAAGTAACATAA ATGGAGCTCTCCGCCTCTTCCAACACAAATGAGATCAGTCGAGCAGAAATAGAAAATGAAACTGGTACTTATGATCCAGTGGAAGCATCCATTAATCGTATTCTTCAACAATCTATTTCATTCTGTTCTGAAGGCGTTACCATTTACAAGGTTCCAGAACTTTTACGCAGCATCAAGCCAGAAGTTTATATGCCCACTACCATCTCTATCGGCCCTTTGCACTCTGATAGAAAAGATCTTGGAGCTAATTCATTCAAATCCATATTCCTTCGACTCTTCCTTGATTTCACCCAGCTCTCCGTGAACACGATTGTAGAAACAGTCCGAAATTTGGAACAAAGAGCTCGCTCATGTTATGCAAAATCCATGGAGATGAGCAGGGATGAATTTGTGGAGCTTCTGGTCTTGGATGCGTATTTCGTGGTCATGCATCTCATCCAATCGACGTGCTCACATTTGGATAGCCCAAAGATGACGGATTTCTTGCAATTCAATTATGAAACATCTCGTGATTTGATGCTGCTTGAAAACCAGCTTCCCTTCTTCCTTCTCCAATCTTTATACGACCTGGTCCTCCACTCAAAACCTTCACTGAATGATAAGAGTTTCATTCAAATTGTTAGTAATTATTTCTGCAACAACGATGACCAAGAGTTGCTTTTTATTGATATCAATTTACCTTTGGCTGCCAAAGTGGATCATTTTCTTGATTTAGTAAGAATACCTTATGAGCAATGCTATATTGGGTATGAGGATAAGAACTCGATGAGCAACTTTGCTGCGTTTATGCAGTTCTTGGTCCAGACAGACCAAGACGTCAAATTGCTAATTAAGGGAGGGATCATAGACAACAACTTGGGTAGTGTCAAAGAGGGCCATATGCATGAAGTAACATAA ATGGAGCTCTCCGCCTCTTCCAACACAAATGAGATCAGTCGAGCAGAAATAGAAAATGAAACTGGTACTTATGATCCAGTGGAAGCATCCATTAATCGTATTCTTCAACAATCTATTTCATTCTGTTCTGAAGGCGTTACCATTTACAAGGTTCCAGAACTTTTACGCAGCATCAAGCCAGAAGTTTATATGCCCACTACCATCTCTATCGGCCCTTTGCACTCTGATAGAAAAGATCTTGGAGCTAATTCATTCAAATCCATATTCCTTCGACTCTTCCTTGATTTCACCCAGCTCTCCGTGAACACGATTGTAGAAACAGTCCGAAATTTGGAACAAAGAGCTCGCTCATGTTATGCAAAATCCATGGAGATGAGCAGGGATGAATTTGTGGAGCTTCTGGTCTTGGATGCGTATTTCGTGGTCATGCATCTCATCCAATCGACGTGCTCACATTTGGATAGCCCAAAGATGACGGATTTCTTGCAATTCAATTATGAAACATCTCGTGATTTGATGCTGCTTGAAAACCAGCTTCCCTTCTTCCTTCTCCAATCTTTATACGACCTGGTCCTCCACTCAAAACCTTCACTGAATGATAAGAGTTTCATTCAAATTGTTAGTAATTATTTCTGCAACAACGATGACCAAGAGTTGCTTTTTATTGATATCAATTTACCTTTGGCTGCCAAAGTGGATCATTTTCTTGATTTAGTAAGAATACCTTATGAGCAATGCTATATTGGGTATGAGGATAAGAACTCGATGAGCAACTTTGCTGCGTTTATGCAGTTCTTGGTCCAGACAGACCAAGACGTCAAATTGCTAATTAAGGGAGGGATCATAGACAACAACTTGGGTAGTGTCAAAGAGGGCCATATGCATGAAGTAACATAA
BLAST of CmoCh05G003960 vs. Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 4.1e-15 Identity = 66/202 (32.67%), Postives = 104/202 (51.49%), Query Frame = 1
BLAST of CmoCh05G003960 vs. Swiss-Prot
Match: Y3264_ARATH (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.3e-08 Identity = 41/157 (26.11%), Postives = 85/157 (54.14%), Query Frame = 1
BLAST of CmoCh05G003960 vs. TrEMBL
Match: A0A0A0LPK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381700 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 5.0e-28 Identity = 92/256 (35.94%), Postives = 144/256 (56.25%), Query Frame = 1
BLAST of CmoCh05G003960 vs. TrEMBL
Match: R0H4C7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10006919mg PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22 Identity = 77/207 (37.20%), Postives = 117/207 (56.52%), Query Frame = 1
BLAST of CmoCh05G003960 vs. TrEMBL
Match: G7KJY8_MEDTR (DUF247 domain protein OS=Medicago truncatula GN=MTR_6g009170 PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 4.1e-22 Identity = 72/235 (30.64%), Postives = 123/235 (52.34%), Query Frame = 1
BLAST of CmoCh05G003960 vs. TrEMBL
Match: M5XHJ6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018248mg PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 2.0e-21 Identity = 73/227 (32.16%), Postives = 129/227 (56.83%), Query Frame = 1
BLAST of CmoCh05G003960 vs. TrEMBL
Match: A0A0D3DJY2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 2.7e-21 Identity = 73/219 (33.33%), Postives = 122/219 (55.71%), Query Frame = 1
BLAST of CmoCh05G003960 vs. TAIR10
Match: AT4G31980.1 (AT4G31980.1 unknown protein) HSP 1 Score: 110.2 bits (274), Expect = 2.3e-24 Identity = 73/216 (33.80%), Postives = 116/216 (53.70%), Query Frame = 1
BLAST of CmoCh05G003960 vs. TAIR10
Match: AT3G47200.1 (AT3G47200.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 83.6 bits (205), Expect = 2.3e-16 Identity = 66/202 (32.67%), Postives = 104/202 (51.49%), Query Frame = 1
BLAST of CmoCh05G003960 vs. TAIR10
Match: AT3G47210.1 (AT3G47210.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 82.0 bits (201), Expect = 6.7e-16 Identity = 70/220 (31.82%), Postives = 106/220 (48.18%), Query Frame = 1
BLAST of CmoCh05G003960 vs. TAIR10
Match: AT3G50160.1 (AT3G50160.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 79.7 bits (195), Expect = 3.3e-15 Identity = 49/175 (28.00%), Postives = 90/175 (51.43%), Query Frame = 1
BLAST of CmoCh05G003960 vs. TAIR10
Match: AT3G50180.1 (AT3G50180.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 76.3 bits (186), Expect = 3.7e-14 Identity = 52/179 (29.05%), Postives = 87/179 (48.60%), Query Frame = 1
BLAST of CmoCh05G003960 vs. NCBI nr
Match: gi|659088876|ref|XP_008445209.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]) HSP 1 Score: 135.2 bits (339), Expect = 1.9e-28 Identity = 88/247 (35.63%), Postives = 138/247 (55.87%), Query Frame = 1
BLAST of CmoCh05G003960 vs. NCBI nr
Match: gi|449442176|ref|XP_004138858.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus]) HSP 1 Score: 133.3 bits (334), Expect = 7.2e-28 Identity = 92/256 (35.94%), Postives = 144/256 (56.25%), Query Frame = 1
BLAST of CmoCh05G003960 vs. NCBI nr
Match: gi|727512971|ref|XP_010432793.1| (PREDICTED: putative UPF0481 protein At3g02645 isoform X2 [Camelina sativa]) HSP 1 Score: 120.2 bits (300), Expect = 6.3e-24 Identity = 85/278 (30.58%), Postives = 146/278 (52.52%), Query Frame = 1
BLAST of CmoCh05G003960 vs. NCBI nr
Match: gi|727512973|ref|XP_010432794.1| (PREDICTED: UPF0481 protein At3g47200-like isoform X1 [Camelina sativa]) HSP 1 Score: 117.5 bits (293), Expect = 4.1e-23 Identity = 78/237 (32.91%), Postives = 129/237 (54.43%), Query Frame = 1
BLAST of CmoCh05G003960 vs. NCBI nr
Match: gi|645281380|ref|XP_008245592.1| (PREDICTED: UPF0481 protein At3g47200-like [Prunus mume]) HSP 1 Score: 116.7 bits (291), Expect = 6.9e-23 Identity = 86/250 (34.40%), Postives = 138/250 (55.20%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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