CmoCh05G003940 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGTTTGTGGATGGTTGTTTTGTAGTAGAGTTTTTAATACGATATTATGAAAAATACTACCCAAATGCACCATCTCACACTCAAAAATGTTTAGACCATTCCTTATACCCAAGAAACCACAAGATATATAATGATTTGATTAAGTTAGAAAATCAAATCCCTTTCTTTGTTCTTGAACGTCTATTCGACTTTATACCACATAATAGTATCCCGTCTCCTTTATGGGTCTTGCATCTATATTTTTTCATCCTAAATTTGTAGATGATAATTCTCTTTGAAGTGACCGTTCTAAACACAAAATTGATACCACTTGTCTTTGTTTCTAGTGTCCTTGTTTCTCTATAGTTCAAAATGGAGCTCTTCATCCGTCCCAACACAAATGAGATCAATCAAGTAGAAATAGAAAATGAAACTGGTACTTCTGATCCCGTGGTAGTATCCATTAATCGTATTCTTCAACAACCTGATTCATCCTATTTTTTAGAAGGTATCATTTACAAGGTTCCAGAACCTCTGCGCAGCATGAACTCAGAAGCTTATACCCCCACTGCCATCTCTATTGGCCCTTTGCACTCCGGTAGAAAAGATCTTAAGGCTAATTCACTTAAACCCATATATCTTCGACACTTCCTTGATCTCGCCCAGCTCTCCGTGAACACAATTGTAGAAACAGTCCAGACTTTGGAACAAAGAGCTCGCTATTGTTACACAGAATTCATCGAGATGAGCAGGGATGAATTTGTGGAACTTCTCGTCTTCGATGCCTGTTTCGTGGTCATGCATCTCACCAGTTGGCAGTACCCAAATTTGGATACCCCAAACGCGGTGAATTTATGGCAATCTTGGAATGAAATATCTCATGATCTGATGCTGCTTGAAAACCAACTTCCCTTCTTCCTTCTCCAATCTTTATACGACCTCTTCGCCCCCTCTCAACCCTTACTAGAACATAAGAGTTTCATTCAAATTGTTCAATATTATTTCTCAGAACACAAAAACCCAAAGTTGTTTTTTATTGATATCAAACTTCTTTCGGTTGACGACGTGAAACATTTTGTTGATTTAGTAACAATGCCTAATACTCGTATGTATTCCCATGAAAAGTCCGGCCAACGCCTATTGTGGCCACTGAATGCCACCGAGCTCCATGAATGCGGCGTTATTTTCAGGAGCGGGGATGGTATAGAATTTAATGACCAAGGTGGGTGTCTACAACTACCGCCAATCAAGATTTACGACGATTTTGAAAAGCGTGTGAGGAACCTTATAGCTTATGAGCAATGCCATATTGGCAATGAGTTAAGGAACAGGGTGAGCAACTTTGCTGTGTTTATGCAGTGTTTGGTCCAGTCCGACCAAGACGTGAAATTGTTGATTGAGGGAGGGATCATAGAGAACTACTTGGGTGGTATCAATGAGATCACCCAATTATTCAACAACCTCGGTAAGCACATCTTCATTGGAATCAACTACTACAATTCTGATTGCAAAAAAATGAAAGATTATTGCATGCGCCGCCACCATCGTTGGATGACGTCGTTGCGACGCAATTATTTCAGCACGCCATGGCTCTGTGCTTCCTCCATTGCAGCCATCCTTCTCCTTGCCCTCACTCTTATACAAACCATCCTGGCTGTATTCACTAGATTCAAAGAACGTTCTTAA ATGATGTTTGTGGATGGTTGTTTTGTAGTAGAGTTTTTAATACGATATTATGAAAAATACTACCCAAATGCACCATCTCACACTCAAAAATGTTTAGACCATTCCTTATACCCAAGAAACCACAAGATATATAATGATTTGATTAAGTTAGAAAATCAAATCCCTTTCTTTGTTCTTGAACGTCTATTCGACTTTATACCACATAATAGTATCCCGTCTCCTTTATGGTTCAAAATGGAGCTCTTCATCCGTCCCAACACAAATGAGATCAATCAAGTAGAAATAGAAAATGAAACTGGTACTTCTGATCCCGTGGTAGTATCCATTAATCGTATTCTTCAACAACCTGATTCATCCTATTTTTTAGAAGGTATCATTTACAAGGTTCCAGAACCTCTGCGCAGCATGAACTCAGAAGCTTATACCCCCACTGCCATCTCTATTGGCCCTTTGCACTCCGGTAGAAAAGATCTTAAGGCTAATTCACTTAAACCCATATATCTTCGACACTTCCTTGATCTCGCCCAGCTCTCCGTGAACACAATTGTAGAAACAGTCCAGACTTTGGAACAAAGAGCTCGCTATTGTTACACAGAATTCATCGAGATGAGCAGGGATGAATTTGTGGAACTTCTCGTCTTCGATGCCTGTTTCGTGGTCATGCATCTCACCAGTTGGCAGTACCCAAATTTGGATACCCCAAACGCGTCCGGCCAACGCCTATTGTGGCCACTGAATGCCACCGAGCTCCATGAATGCGGCGTTATTTTCAGGAGCGGGGATGGTATAGAATTTAATGACCAAGGTGGGTGTCTACAACTACCGCCAATCAAGATTTACGACGATTTTGAAAAGCGTGTGAGGAACCTTATAGCTTATGAGCAATGCCATATTGGCAATGAGTTAAGGAACAGGGTGAGCAACTTTGCTGTGTTTATGCAGTGTTTGGTCCAGTCCGACCAAGACGTGAAATTGTTGATTGAGGGAGGGATCATAGAGAACTACTTGGGTGGTATCAATGAGATCACCCAATTATTCAACAACCTCGGTAAGCACATCTTCATTGGAATCAACTACTACAATTCTGATTGCAAAAAAATGAAAGATTATTGCATGCGCCGCCACCATCGTTGGATGACGTCGTTGCGACGCAATTATTTCAGCACGCCATGGCTCTGTGCTTCCTCCATTGCAGCCATCCTTCTCCTTGCCCTCACTCTTATACAAACCATCCTGGCTGTATTCACTAGATTCAAAGAACGTTCTTAA ATGATGTTTGTGGATGGTTGTTTTGTAGTAGAGTTTTTAATACGATATTATGAAAAATACTACCCAAATGCACCATCTCACACTCAAAAATGTTTAGACCATTCCTTATACCCAAGAAACCACAAGATATATAATGATTTGATTAAGTTAGAAAATCAAATCCCTTTCTTTGTTCTTGAACGTCTATTCGACTTTATACCACATAATAGTATCCCGTCTCCTTTATGGTTCAAAATGGAGCTCTTCATCCGTCCCAACACAAATGAGATCAATCAAGTAGAAATAGAAAATGAAACTGGTACTTCTGATCCCGTGGTAGTATCCATTAATCGTATTCTTCAACAACCTGATTCATCCTATTTTTTAGAAGGTATCATTTACAAGGTTCCAGAACCTCTGCGCAGCATGAACTCAGAAGCTTATACCCCCACTGCCATCTCTATTGGCCCTTTGCACTCCGGTAGAAAAGATCTTAAGGCTAATTCACTTAAACCCATATATCTTCGACACTTCCTTGATCTCGCCCAGCTCTCCGTGAACACAATTGTAGAAACAGTCCAGACTTTGGAACAAAGAGCTCGCTATTGTTACACAGAATTCATCGAGATGAGCAGGGATGAATTTGTGGAACTTCTCGTCTTCGATGCCTGTTTCGTGGTCATGCATCTCACCAGTTGGCAGTACCCAAATTTGGATACCCCAAACGCGTCCGGCCAACGCCTATTGTGGCCACTGAATGCCACCGAGCTCCATGAATGCGGCGTTATTTTCAGGAGCGGGGATGGTATAGAATTTAATGACCAAGGTGGGTGTCTACAACTACCGCCAATCAAGATTTACGACGATTTTGAAAAGCGTGTGAGGAACCTTATAGCTTATGAGCAATGCCATATTGGCAATGAGTTAAGGAACAGGGTGAGCAACTTTGCTGTGTTTATGCAGTGTTTGGTCCAGTCCGACCAAGACGTGAAATTGTTGATTGAGGGAGGGATCATAGAGAACTACTTGGGTGGTATCAATGAGATCACCCAATTATTCAACAACCTCGGTAAGCACATCTTCATTGGAATCAACTACTACAATTCTGATTGCAAAAAAATGAAAGATTATTGCATGCGCCGCCACCATCGTTGGATGACGTCGTTGCGACGCAATTATTTCAGCACGCCATGGCTCTGTGCTTCCTCCATTGCAGCCATCCTTCTCCTTGCCCTCACTCTTATACAAACCATCCTGGCTGTATTCACTAGATTCAAAGAACGTTCTTAA
BLAST of CmoCh05G003940 vs. Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 2.7e-12 Identity = 40/153 (26.14%), Postives = 81/153 (52.94%), Query Frame = 1
BLAST of CmoCh05G003940 vs. Swiss-Prot
Match: Y3264_ARATH (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 6.8e-08 Identity = 44/179 (24.58%), Postives = 83/179 (46.37%), Query Frame = 1
BLAST of CmoCh05G003940 vs. TrEMBL
Match: A0A0A0LPK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381700 PE=4 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 4.3e-41 Identity = 87/181 (48.07%), Postives = 120/181 (66.30%), Query Frame = 1
BLAST of CmoCh05G003940 vs. TrEMBL
Match: K4BP47_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36 Identity = 123/359 (34.26%), Postives = 176/359 (49.03%), Query Frame = 1
BLAST of CmoCh05G003940 vs. TrEMBL
Match: M5Y6G9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022094mg PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 2.4e-36 Identity = 106/322 (32.92%), Postives = 171/322 (53.11%), Query Frame = 1
BLAST of CmoCh05G003940 vs. TrEMBL
Match: G7L358_MEDTR (UPF0481 plant-like protein OS=Medicago truncatula GN=MTR_7g011980 PE=4 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32 Identity = 101/360 (28.06%), Postives = 175/360 (48.61%), Query Frame = 1
BLAST of CmoCh05G003940 vs. TrEMBL
Match: V7AUP2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G094800g PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29 Identity = 91/327 (27.83%), Postives = 171/327 (52.29%), Query Frame = 1
BLAST of CmoCh05G003940 vs. TAIR10
Match: AT4G31980.1 (AT4G31980.1 unknown protein) HSP 1 Score: 114.8 bits (286), Expect = 1.3e-25 Identity = 76/251 (30.28%), Postives = 125/251 (49.80%), Query Frame = 1
BLAST of CmoCh05G003940 vs. TAIR10
Match: AT3G50160.1 (AT3G50160.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 110.5 bits (275), Expect = 2.5e-24 Identity = 66/177 (37.29%), Postives = 98/177 (55.37%), Query Frame = 1
BLAST of CmoCh05G003940 vs. TAIR10
Match: AT5G11290.1 (AT5G11290.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 107.5 bits (267), Expect = 2.1e-23 Identity = 61/188 (32.45%), Postives = 98/188 (52.13%), Query Frame = 1
BLAST of CmoCh05G003940 vs. TAIR10
Match: AT3G50140.1 (AT3G50140.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 107.1 bits (266), Expect = 2.7e-23 Identity = 62/180 (34.44%), Postives = 98/180 (54.44%), Query Frame = 1
BLAST of CmoCh05G003940 vs. TAIR10
Match: AT3G50120.1 (AT3G50120.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 105.5 bits (262), Expect = 8.0e-23 Identity = 62/180 (34.44%), Postives = 98/180 (54.44%), Query Frame = 1
BLAST of CmoCh05G003940 vs. NCBI nr
Match: gi|658033334|ref|XP_008352182.1| (PREDICTED: UPF0481 protein At3g47200-like [Malus domestica]) HSP 1 Score: 211.1 bits (536), Expect = 3.8e-51 Identity = 114/295 (38.64%), Postives = 176/295 (59.66%), Query Frame = 1
BLAST of CmoCh05G003940 vs. NCBI nr
Match: gi|659088876|ref|XP_008445209.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]) HSP 1 Score: 183.7 bits (465), Expect = 6.6e-43 Identity = 89/181 (49.17%), Postives = 124/181 (68.51%), Query Frame = 1
BLAST of CmoCh05G003940 vs. NCBI nr
Match: gi|449442176|ref|XP_004138858.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus]) HSP 1 Score: 177.2 bits (448), Expect = 6.1e-41 Identity = 87/181 (48.07%), Postives = 120/181 (66.30%), Query Frame = 1
BLAST of CmoCh05G003940 vs. NCBI nr
Match: gi|848908217|ref|XP_012853089.1| (PREDICTED: uncharacterized protein LOC105972658 [Erythranthe guttata]) HSP 1 Score: 173.3 bits (438), Expect = 8.9e-40 Identity = 106/304 (34.87%), Postives = 169/304 (55.59%), Query Frame = 1
BLAST of CmoCh05G003940 vs. NCBI nr
Match: gi|596291367|ref|XP_007226331.1| (hypothetical protein PRUPE_ppa022094mg [Prunus persica]) HSP 1 Score: 161.4 bits (407), Expect = 3.5e-36 Identity = 106/322 (32.92%), Postives = 171/322 (53.11%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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