CmoCh05G002080 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G002080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Gag-pol polyprotein) (Retrotransposon protein, putative, unclassified)
LocationCmo_Chr05 : 903940 .. 904950 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACACGTACGGCCACGGCAAAAAGCGACTGATTGTGGGAGTGTACGTCGACGACCTCATAATCACTGGAGGCGACGTGGGAGTCCTCGGAAGCTTCAAGAAGGCGATGTCGAAAAACTTTGAGATGAGCGATCTCGGTGTGCTCAGCTACTACCTCGGCATCGAAGTGCAACAGAACTCTTCCGGCATCTCCATCTGCCAAAGTGCATACGCGAGGAAGCTGCTGGACACAACTGGGCTTGTGGACAGTAATCCTACCAGGACGCCAATGGAGGCCCGACTTCAACTAAGGAAGGCCGGCACTACGACGACAGTCGACTCCACCAATTACCGCAGCATTGTCGGGAGTCTGCGCTATCTGGTAAACTCTCGTCCTGATCTTGCTTATTCTGTTGGCTATGTGAGCAGGTTTATGGAAGCACCTAGGGAGGAGCATCTAGTGGCTGTCAAGCGCATCCTGCGCTATGTAGCCGGAACCAGAGGTTGGGGTGTGAGATATTGTGCAGGGAGCGGAAAGGAGAAACTCAAGCTGGTCGGCTACAGTGATAGTGACATGGCCGGTGACGTTGATGATCGTAAGAGCACCAGCGGAATGATCTACTTTCTCTCAGGCGGCGCGATCTGCTGGCAATCAACAAAACAGAGGGTGGTTGCTTTGTCTTCCTGCGAAGCAGAATACATCGCCGCTTCGATGGCAGCAACACAAGGGATCTGGCTTGCACGACTAATGGAAGAACTCATCGGGAGAGAAAGTGATCCACCAATGCTATACGTAGACAACAAAGCTACGATCTCCCTGATCAAAAATCCAGTTTTGCACGACCGGAGCAAGCACATAGAAATCAGATTCCACTACATTCGAGAATGTGCAGATCGATGGCTCATCAAGATTGATTTCATCCGAACAGAGGAACAACTTGGAGACATTTTCACCAAGTCCCTGGCGCGGGTGAAATTCGAAGAACTACGCTCAAAGATCGGAGTTCAAATAATAAGGTACAGCTTTTAG

mRNA sequence

ATGTACACGTACGGCCACGGCAAAAAGCGACTGATTGTGGGAGTGTACGTCGACGACCTCATAATCACTGGAGGCGACGTGGGAGTCCTCGGAAGCTTCAAGAAGGCGATGTCGAAAAACTTTGAGATGAGCGATCTCGGTGTGCTCAGCTACTACCTCGGCATCGAAGTGCAACAGAACTCTTCCGGCATCTCCATCTGCCAAAGTGCATACGCGAGGAAGCTGCTGGACACAACTGGGCTTGTGGACAGTAATCCTACCAGGACGCCAATGGAGGCCCGACTTCAACTAAGGAAGGCCGGCACTACGACGACAGTCGACTCCACCAATTACCGCAGCATTGTCGGGAGTCTGCGCTATCTGGTAAACTCTCGTCCTGATCTTGCTTATTCTGTTGGCTATGTGAGCAGGTTTATGGAAGCACCTAGGGAGGAGCATCTAGTGGCTGTCAAGCGCATCCTGCGCTATGTAGCCGGAACCAGAGGTTGGGGTGTGAGATATTGTGCAGGGAGCGGAAAGGAGAAACTCAAGCTGGTCGGCTACAGTGATAGTGACATGGCCGGTGACGTTGATGATCGTAAGAGCACCAGCGGAATGATCTACTTTCTCTCAGGCGGCGCGATCTGCTGGCAATCAACAAAACAGAGGGTGGTTGCTTTGTCTTCCTGCGAAGCAGAATACATCGCCGCTTCGATGGCAGCAACACAAGGGATCTGGCTTGCACGACTAATGGAAGAACTCATCGGGAGAGAAAGTGATCCACCAATGCTATACGTAGACAACAAAGCTACGATCTCCCTGATCAAAAATCCAGTTTTGCACGACCGGAGCAAGCACATAGAAATCAGATTCCACTACATTCGAGAATGTGCAGATCGATGGCTCATCAAGATTGATTTCATCCGAACAGAGGAACAACTTGGAGACATTTTCACCAAGTCCCTGGCGCGGGTGAAATTCGAAGAACTACGCTCAAAGATCGGAGTTCAAATAATAAGGTACAGCTTTTAG

Coding sequence (CDS)

ATGTACACGTACGGCCACGGCAAAAAGCGACTGATTGTGGGAGTGTACGTCGACGACCTCATAATCACTGGAGGCGACGTGGGAGTCCTCGGAAGCTTCAAGAAGGCGATGTCGAAAAACTTTGAGATGAGCGATCTCGGTGTGCTCAGCTACTACCTCGGCATCGAAGTGCAACAGAACTCTTCCGGCATCTCCATCTGCCAAAGTGCATACGCGAGGAAGCTGCTGGACACAACTGGGCTTGTGGACAGTAATCCTACCAGGACGCCAATGGAGGCCCGACTTCAACTAAGGAAGGCCGGCACTACGACGACAGTCGACTCCACCAATTACCGCAGCATTGTCGGGAGTCTGCGCTATCTGGTAAACTCTCGTCCTGATCTTGCTTATTCTGTTGGCTATGTGAGCAGGTTTATGGAAGCACCTAGGGAGGAGCATCTAGTGGCTGTCAAGCGCATCCTGCGCTATGTAGCCGGAACCAGAGGTTGGGGTGTGAGATATTGTGCAGGGAGCGGAAAGGAGAAACTCAAGCTGGTCGGCTACAGTGATAGTGACATGGCCGGTGACGTTGATGATCGTAAGAGCACCAGCGGAATGATCTACTTTCTCTCAGGCGGCGCGATCTGCTGGCAATCAACAAAACAGAGGGTGGTTGCTTTGTCTTCCTGCGAAGCAGAATACATCGCCGCTTCGATGGCAGCAACACAAGGGATCTGGCTTGCACGACTAATGGAAGAACTCATCGGGAGAGAAAGTGATCCACCAATGCTATACGTAGACAACAAAGCTACGATCTCCCTGATCAAAAATCCAGTTTTGCACGACCGGAGCAAGCACATAGAAATCAGATTCCACTACATTCGAGAATGTGCAGATCGATGGCTCATCAAGATTGATTTCATCCGAACAGAGGAACAACTTGGAGACATTTTCACCAAGTCCCTGGCGCGGGTGAAATTCGAAGAACTACGCTCAAAGATCGGAGTTCAAATAATAAGGTACAGCTTTTAG
Homology
[Close]
BLAST of CmoCh05G002080 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 6.6e-62
Identity = 137/328 (41.77%), Postives = 204/328 (62.20%), Query Frame = 1 

Query: 11   LIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEV--QQNSSGISICQ 70
            +I+ +YVDD++I G D G++   K  +SK+F+M DLG     LG+++  ++ S  + + Q
Sbjct: 1003 IILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQ 1062

Query: 71   SAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTN------YRSIVGSLRY-L 130
              Y  ++L+   + ++ P  TP+   L+L K    TTV+         Y S VGSL Y +
Sbjct: 1063 EKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAM 1122

Query: 131  VNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVGY 190
            V +RPD+A++VG VSRF+E P +EH  AVK ILRY+ GT G  +  C G     LK  GY
Sbjct: 1123 VCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCL--CFGGSDPILK--GY 1182

Query: 191  SDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWLA 250
            +D+DMAGD+D+RKS++G ++  SGGAI WQS  Q+ VALS+ EAEYIAA+    + IWL 
Sbjct: 1183 TDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLK 1242

Query: 251  RLMEELIGRESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRECADRWLIKIDFI 310
            R ++EL G      ++Y D+++ I L KN + H R+KHI++R+H+IRE  D   +K+  I
Sbjct: 1243 RFLQEL-GLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKI 1302

Query: 311  RTEEQLGDIFTKSLARVKFEELRSKIGV 330
             T E   D+ TK + R KFE  +  +G+
Sbjct: 1303 STNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]
BLAST of CmoCh05G002080 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 209.5 bits (532), Expect = 5.6e-53
Identity = 115/327 (35.17%), Postives = 187/327 (57.19%), Query Frame = 1 

Query: 5    GHGKKRLIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQNSSGI 64
            G+  + + V +YVDD++I  GD+  + +FK+ + + F M+DL  + +++GI ++     I
Sbjct: 1076 GNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKI 1135

Query: 65   SICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRYLVN- 124
             + QSAY +K+L    + + N   TP+ +++      +    + T  RS++G L Y++  
Sbjct: 1136 YLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCN-TPCRSLIGCLMYIMLC 1195

Query: 125  SRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVGYSD 184
            +RPDL  +V  +SR+      E    +KR+LRY+ GT    + +      E  K++GY D
Sbjct: 1196 TRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFEN-KIIGYVD 1255

Query: 185  SDMAGDVDDRKSTSGMIY-FLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWLAR 244
            SD AG   DRKST+G ++       ICW + +Q  VA SS EAEY+A   A  + +WL  
Sbjct: 1256 SDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKF 1315

Query: 245  LMEELIGRESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRECADRWLIKIDFIR 304
            L+  +  +  +P  +Y DN+  IS+  NP  H R+KHI+I++H+ RE     +I +++I 
Sbjct: 1316 LLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIP 1375

Query: 305  TEEQLGDIFTKSLARVKFEELRSKIGV 330
            TE QL DIFTK L   +F ELR K+G+
Sbjct: 1376 TENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]
BLAST of CmoCh05G002080 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-34
Identity = 82/225 (36.44%), Postives = 127/225 (56.44%), Query Frame = 1 

Query: 15  VYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQNSSGISICQSAYARK 74
           +YVDD+++TG    +L      +S  F M DLG + Y+LGI+++ + SG+ + Q+ YA +
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 75  LLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRYLVNSRPDLAYSVGY 134
           +L+  G++D  P  TP+  +L      T    D +++RSIVG+L+YL  +RPD++Y+V  
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 124

Query: 135 VSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVGYSDSDMAGDVDDRK 194
           V + M  P       +KR+LRYV GT   G+     S   KL +  + DSD AG    R+
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNS---KLNVQAFCDSDWAGCTSTRR 184

Query: 195 STSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIW 240
           ST+G   FL    I W + +Q  V+ SS E EY A ++ A +  W
Sbjct: 185 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CmoCh05G002080 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-26
Identity = 76/224 (33.93%), Postives = 121/224 (54.02%), Query Frame = 1 

Query: 11  LIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQNSSG-ISICQS 70
           + + VYVDDL++      +    K+ ++K + M DLG +  +LG+ + Q+S+G I++   
Sbjct: 82  IYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQ 141

Query: 71  AYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRYLVNS-RPDL 130
            Y  K    + +     T+TP+     L +  +    D T Y+SIVG L +  N+ RPD+
Sbjct: 142 DYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDI 201

Query: 131 AYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVGYSDSDMAG 190
           +Y V  +SRF+  PR  HL + +R+LRY+  TR   ++Y +GS   +L L  Y D+    
Sbjct: 202 SYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGS---QLALTVYCDASHGA 261

Query: 191 DVDDRKSTSGMIYFLSGGAICWQSTKQR-VVALSSCEAEYIAAS 232
             D   ST G +  L+G  + W S K + V+ + S EAEYI AS
Sbjct: 262 IHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITAS 302

[Close]
BLAST of CmoCh05G002080 vs. Swiss-Prot
Match: M240_ARATH (Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana GN=AtMg00240 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-07
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 120 YLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLV 179
           YL  +RPDL ++V  +S+F  A R   + AV ++L YV GT G G+ Y A S    L+L 
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATS---DLQLK 61

Query: 180 GYSDSDMAGDVDDRKSTSG 199
            ++DSD A   D R+S +G
Sbjct: 62  AFADSDWASCPDTRRSVTG 77

[Close]
BLAST of CmoCh05G002080 vs. TrEMBL
Match: Q7XPB1_ORYSJ (OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0026E15.10 PE=4 SV=2)

HSP 1 Score: 432.6 bits (1111), Expect = 4.5e-118
Identity = 216/329 (65.65%), Postives = 266/329 (80.85%), Query Frame = 1 

Query: 1    MYTYGHGKKRLIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQN 60
            +YT   G +RL+VGVYVDDLIITG     + SFK  M K F+MSDLG L YYLGIEV Q+
Sbjct: 1112 VYTRTRGGRRLMVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQD 1171

Query: 61   SSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRY 120
            S GI++ Q+AYA K+L+  GL D NP +TPME RL+LRK      VD+T YRS+VGSLRY
Sbjct: 1172 SDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSDFPLVDATLYRSLVGSLRY 1231

Query: 121  LVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVG 180
            LVN+RPDLA+SVGYVSRFME+PRE+HL AV+RILRYVAGTR WG+R+  G+      LVG
Sbjct: 1232 LVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVG 1291

Query: 181  YSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWL 240
            YSDSD+AGD D+RKSTSG I+F++GG + WQS+KQ+VVALSSCEAEYIAA+ A  QG+WL
Sbjct: 1292 YSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKQKVVALSSCEAEYIAAAAATCQGVWL 1351

Query: 241  ARLMEELIGRESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRECADRWLIKIDF 300
            ARL+ E++G E   P+L VDN++TISLIKNPV HDRSKHI++++HYIRECA++ LI++ F
Sbjct: 1352 ARLLAEVLGDEITAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRECAEKKLIEMMF 1411

Query: 301  IRTEEQLGDIFTKSLARVKFEELRSKIGV 330
            + T EQLGDIFTKSL R +F+ELRSKIGV
Sbjct: 1412 VGTAEQLGDIFTKSLGRTRFQELRSKIGV 1440

[Close]
BLAST of CmoCh05G002080 vs. TrEMBL
Match: C7J163_ORYSJ (Os04g0196500 protein OS=Oryza sativa subsp. japonica GN=Os04g0196500 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 4.5e-118
Identity = 216/329 (65.65%), Postives = 266/329 (80.85%), Query Frame = 1 

Query: 1   MYTYGHGKKRLIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQN 60
           +YT   G +RL+VGVYVDDLIITG     + SFK  M K F+MSDLG L YYLGIEV Q+
Sbjct: 568 VYTRTRGGRRLMVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQD 627

Query: 61  SSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRY 120
           S GI++ Q+AYA K+L+  GL D NP +TPME RL+LRK      VD+T YRS+VGSLRY
Sbjct: 628 SDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSDFPLVDATLYRSLVGSLRY 687

Query: 121 LVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVG 180
           LVN+RPDLA+SVGYVSRFME+PRE+HL AV+RILRYVAGTR WG+R+  G+      LVG
Sbjct: 688 LVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVG 747

Query: 181 YSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWL 240
           YSDSD+AGD D+RKSTSG I+F++GG + WQS+KQ+VVALSSCEAEYIAA+ A  QG+WL
Sbjct: 748 YSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKQKVVALSSCEAEYIAAAAATCQGVWL 807

Query: 241 ARLMEELIGRESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRECADRWLIKIDF 300
           ARL+ E++G E   P+L VDN++TISLIKNPV HDRSKHI++++HYIRECA++ LI++ F
Sbjct: 808 ARLLAEVLGDEITAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRECAEKKLIEMMF 867

Query: 301 IRTEEQLGDIFTKSLARVKFEELRSKIGV 330
           + T EQLGDIFTKSL R +F+ELRSKIGV
Sbjct: 868 VGTAEQLGDIFTKSLGRTRFQELRSKIGV 896

[Close]
BLAST of CmoCh05G002080 vs. TrEMBL
Match: A0B9X7_ORYSA (OSIGBa0135C09.3 protein OS=Oryza sativa GN=OSIGBa0135C09.3 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 8.5e-117
Identity = 214/329 (65.05%), Postives = 264/329 (80.24%), Query Frame = 1 

Query: 1    MYTYGHGKKRLIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQN 60
            +YT   G +RL VGVYVDDLIITG     + SFK  M K F+MSDLG L YYLGIEV Q+
Sbjct: 1029 VYTRTRGGRRLTVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQD 1088

Query: 61   SSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRY 120
            S GI++ Q+AYA K+L+  GL D NP +TPME RL+LRK      VD+T YRS+VGSLRY
Sbjct: 1089 SDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSDFPLVDATLYRSLVGSLRY 1148

Query: 121  LVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVG 180
            LVN+RPDLA+SVGYVSRFME+PRE+HL AV+RILRYVAGTR WG+R+  G+      LVG
Sbjct: 1149 LVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVG 1208

Query: 181  YSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWL 240
            YSDSD+AGD D+RKSTSG I+F++GG + WQS+K++VVALSSCEAEYIAA+    QG+WL
Sbjct: 1209 YSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKKKVVALSSCEAEYIAAAATTCQGVWL 1268

Query: 241  ARLMEELIGRESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRECADRWLIKIDF 300
            ARL+ E++G E   P+L VDN++TISLIKNPV HDRSKHI++++HYIRECA++ LI++ F
Sbjct: 1269 ARLLAEVLGDEIAAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRECAEKKLIEMMF 1328

Query: 301  IRTEEQLGDIFTKSLARVKFEELRSKIGV 330
            + T EQLGDIFTKSL R +F+ELRSKIGV
Sbjct: 1329 VGTAEQLGDIFTKSLGRTRFQELRSKIGV 1357

[Close]
BLAST of CmoCh05G002080 vs. TrEMBL
Match: Q2R2J6_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os11g35590 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 1.3e-112
Identity = 207/319 (64.89%), Postives = 255/319 (79.94%), Query Frame = 1 

Query: 1    MYTYGHGKKRLIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQN 60
            +YT   G +RL VGVYVDDLIITG     + SFK  M K F+MSDLG L YYLGIEV Q+
Sbjct: 994  VYTRTRGGRRLTVGVYVDDLIITGEHDDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQD 1053

Query: 61   SSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRY 120
            S GI++ Q+AYA K+L+  GL D NP +TPME RL+LRK      VD+T YRS+VGSLRY
Sbjct: 1054 SDGITLGQAAYAGKILEKAGLNDCNPCQTPMEVRLKLRKGSNFPLVDATLYRSLVGSLRY 1113

Query: 121  LVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVG 180
            LVN+RPDLA+SVGYVSRFME+PRE+HL AV+RILRYVAGTR WG+R+  G+      LVG
Sbjct: 1114 LVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVG 1173

Query: 181  YSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWL 240
            YSDSD+AGD D+RKSTSG I+F++GG + WQS+KQ+VVALSSCEAEYIAA+ A  QG+WL
Sbjct: 1174 YSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKQKVVALSSCEAEYIAAAAATCQGVWL 1233

Query: 241  ARLMEELIGRESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRECADRWLIKIDF 300
            ARL+ E++G E   P+L VDN++TISLIKNPV HDRSKHI++++HYIRECA++ LI++ F
Sbjct: 1234 ARLLAEVLGDEITAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRECAEKKLIEMMF 1293

Query: 301  IRTEEQLGDIFTKSLARVK 320
            + T EQLGDIFTKSL R +
Sbjct: 1294 VGTAEQLGDIFTKSLGRTR 1312

[Close]
BLAST of CmoCh05G002080 vs. TrEMBL
Match: Q0J5Y3_ORYSJ (Os08g0389500 protein OS=Oryza sativa subsp. japonica GN=Os08g0389500 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 2.2e-112
Identity = 199/329 (60.49%), Postives = 254/329 (77.20%), Query Frame = 1 

Query: 1    MYTYGHGKKRLIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQN 60
            +YT   G+KRL+VG+YVDDLIITGG   V+ +FK  M   F MSDLGVLSYYLGIEV+Q 
Sbjct: 1123 LYTRSDGEKRLVVGIYVDDLIITGGSTEVINTFKTEMKTLFRMSDLGVLSYYLGIEVRQG 1182

Query: 61   SSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRY 120
              GI + Q+AYA+K+L+  G+   NP  TPMEARL+L K  T+  VD+T YRS++GSLRY
Sbjct: 1183 RRGIELLQAAYAKKILEKAGMGTCNPCATPMEARLKLSKQSTSPAVDATEYRSLIGSLRY 1242

Query: 121  LVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVG 180
            L+N+RPD+A++VGY+SRFME PR+EHL A+K +LRYVAGT  +G+ Y   SG  +  LVG
Sbjct: 1243 LMNTRPDMAFAVGYLSRFMENPRQEHLAAMKHLLRYVAGTIDYGLVYT--SGDTEFNLVG 1302

Query: 181  YSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWL 240
            YSDSDMAGD+DDRKSTSG+IYFL G  + WQS KQRVVALSSCEAEYIA + AA QG+WL
Sbjct: 1303 YSDSDMAGDIDDRKSTSGIIYFLGGNPVAWQSQKQRVVALSSCEAEYIAGAAAACQGVWL 1362

Query: 241  ARLMEELIGRESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRECADRWLIKIDF 300
             RL+++++G    PP L +DN++ I+L KNPVLHDRSKHI+ +FH++REC D   +++ F
Sbjct: 1363 RRLLQDVVGVSGPPPQLKMDNQSAIALSKNPVLHDRSKHIDTKFHFLRECVDSGAVRLAF 1422

Query: 301  IRTEEQLGDIFTKSLARVKFEELRSKIGV 330
            + T+ QL DI TK+L R KF+ELR  IGV
Sbjct: 1423 VSTQAQLADIMTKALGRSKFQELRELIGV 1449

[Close]
BLAST of CmoCh05G002080 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-52
Identity = 113/279 (40.50%), Postives = 164/279 (58.78%), Query Frame = 1 

Query: 11  LIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQNSSGISICQSA 70
           L V VYVDD+II   +   +   K  +   F++ DLG L Y+LG+E+ ++++GI+ICQ  
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRK 337

Query: 71  YARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRYLVNSRPDLAY 130
           YA  LLD TGL+   P+  PM+  +          VD+  YR ++G L YL  +R D+++
Sbjct: 338 YALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISF 397

Query: 131 SVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVGYSDSDMAGDV 190
           +V  +S+F EAPR  H  AV +IL Y+ GT G G+ Y   S + +++L  +SD+      
Sbjct: 398 AVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFY---SSQAEMQLQVFSDASFQSCK 457

Query: 191 DDRKSTSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWLARLMEELIGR 250
           D R+ST+G   FL    I W+S KQ+VV+ SS EAEY A S A  + +WLA+   EL   
Sbjct: 458 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 517

Query: 251 ESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRE 290
            S P +L+ DN A I +  N V H+R+KHIE   H +RE
Sbjct: 518 LSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]
BLAST of CmoCh05G002080 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 148.3 bits (373), Expect = 8.6e-36
Identity = 82/225 (36.44%), Postives = 127/225 (56.44%), Query Frame = 1 

Query: 15  VYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQNSSGISICQSAYARK 74
           +YVDD+++TG    +L      +S  F M DLG + Y+LGI+++ + SG+ + Q+ YA +
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 75  LLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRYLVNSRPDLAYSVGY 134
           +L+  G++D  P  TP+  +L      T    D +++RSIVG+L+YL  +RPD++Y+V  
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 124

Query: 135 VSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVGYSDSDMAGDVDDRK 194
           V + M  P       +KR+LRYV GT   G+     S   KL +  + DSD AG    R+
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNS---KLNVQAFCDSDWAGCTSTRR 184

Query: 195 STSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIW 240
           ST+G   FL    I W + +Q  V+ SS E EY A ++ A +  W
Sbjct: 185 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]
BLAST of CmoCh05G002080 vs. TAIR10
Match: ATMG00240.1 (ATMG00240.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 58.9 bits (141), Expect = 6.8e-09
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 120 YLVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLV 179
           YL  +RPDL ++V  +S+F  A R   + AV ++L YV GT G G+ Y A S    L+L 
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATS---DLQLK 61

Query: 180 GYSDSDMAGDVDDRKSTSG 199
            ++DSD A   D R+S +G
Sbjct: 62  AFADSDWASCPDTRRSVTG 77

[Close]
BLAST of CmoCh05G002080 vs. NCBI nr
Match: gi|38344222|emb|CAE03692.2| (OSJNBb0026E15.10 [Oryza sativa Japonica Group])

HSP 1 Score: 432.6 bits (1111), Expect = 6.4e-118
Identity = 216/329 (65.65%), Postives = 266/329 (80.85%), Query Frame = 1 

Query: 1    MYTYGHGKKRLIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQN 60
            +YT   G +RL+VGVYVDDLIITG     + SFK  M K F+MSDLG L YYLGIEV Q+
Sbjct: 1112 VYTRTRGGRRLMVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQD 1171

Query: 61   SSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRY 120
            S GI++ Q+AYA K+L+  GL D NP +TPME RL+LRK      VD+T YRS+VGSLRY
Sbjct: 1172 SDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSDFPLVDATLYRSLVGSLRY 1231

Query: 121  LVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVG 180
            LVN+RPDLA+SVGYVSRFME+PRE+HL AV+RILRYVAGTR WG+R+  G+      LVG
Sbjct: 1232 LVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVG 1291

Query: 181  YSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWL 240
            YSDSD+AGD D+RKSTSG I+F++GG + WQS+KQ+VVALSSCEAEYIAA+ A  QG+WL
Sbjct: 1292 YSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKQKVVALSSCEAEYIAAAAATCQGVWL 1351

Query: 241  ARLMEELIGRESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRECADRWLIKIDF 300
            ARL+ E++G E   P+L VDN++TISLIKNPV HDRSKHI++++HYIRECA++ LI++ F
Sbjct: 1352 ARLLAEVLGDEITAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRECAEKKLIEMMF 1411

Query: 301  IRTEEQLGDIFTKSLARVKFEELRSKIGV 330
            + T EQLGDIFTKSL R +F+ELRSKIGV
Sbjct: 1412 VGTAEQLGDIFTKSLGRTRFQELRSKIGV 1440

[Close]
BLAST of CmoCh05G002080 vs. NCBI nr
Match: gi|255675204|dbj|BAH92510.1| (Os04g0196500 [Oryza sativa Japonica Group])

HSP 1 Score: 432.6 bits (1111), Expect = 6.4e-118
Identity = 216/329 (65.65%), Postives = 266/329 (80.85%), Query Frame = 1 

Query: 1   MYTYGHGKKRLIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQN 60
           +YT   G +RL+VGVYVDDLIITG     + SFK  M K F+MSDLG L YYLGIEV Q+
Sbjct: 568 VYTRTRGGRRLMVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQD 627

Query: 61  SSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRY 120
           S GI++ Q+AYA K+L+  GL D NP +TPME RL+LRK      VD+T YRS+VGSLRY
Sbjct: 628 SDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSDFPLVDATLYRSLVGSLRY 687

Query: 121 LVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVG 180
           LVN+RPDLA+SVGYVSRFME+PRE+HL AV+RILRYVAGTR WG+R+  G+      LVG
Sbjct: 688 LVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVG 747

Query: 181 YSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWL 240
           YSDSD+AGD D+RKSTSG I+F++GG + WQS+KQ+VVALSSCEAEYIAA+ A  QG+WL
Sbjct: 748 YSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKQKVVALSSCEAEYIAAAAATCQGVWL 807

Query: 241 ARLMEELIGRESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRECADRWLIKIDF 300
           ARL+ E++G E   P+L VDN++TISLIKNPV HDRSKHI++++HYIRECA++ LI++ F
Sbjct: 808 ARLLAEVLGDEITAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRECAEKKLIEMMF 867

Query: 301 IRTEEQLGDIFTKSLARVKFEELRSKIGV 330
           + T EQLGDIFTKSL R +F+ELRSKIGV
Sbjct: 868 VGTAEQLGDIFTKSLGRTRFQELRSKIGV 896

[Close]
BLAST of CmoCh05G002080 vs. NCBI nr
Match: gi|116634828|emb|CAH66352.1| (OSIGBa0135C09.3 [Oryza sativa Indica Group])

HSP 1 Score: 428.3 bits (1100), Expect = 1.2e-116
Identity = 214/329 (65.05%), Postives = 264/329 (80.24%), Query Frame = 1 

Query: 1    MYTYGHGKKRLIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQN 60
            +YT   G +RL VGVYVDDLIITG     + SFK  M K F+MSDLG L YYLGIEV Q+
Sbjct: 1029 VYTRTRGGRRLTVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQD 1088

Query: 61   SSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRY 120
            S GI++ Q+AYA K+L+  GL D NP +TPME RL+LRK      VD+T YRS+VGSLRY
Sbjct: 1089 SDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSDFPLVDATLYRSLVGSLRY 1148

Query: 121  LVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVG 180
            LVN+RPDLA+SVGYVSRFME+PRE+HL AV+RILRYVAGTR WG+R+  G+      LVG
Sbjct: 1149 LVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVG 1208

Query: 181  YSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWL 240
            YSDSD+AGD D+RKSTSG I+F++GG + WQS+K++VVALSSCEAEYIAA+    QG+WL
Sbjct: 1209 YSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKKKVVALSSCEAEYIAAAATTCQGVWL 1268

Query: 241  ARLMEELIGRESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRECADRWLIKIDF 300
            ARL+ E++G E   P+L VDN++TISLIKNPV HDRSKHI++++HYIRECA++ LI++ F
Sbjct: 1269 ARLLAEVLGDEIAAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRECAEKKLIEMMF 1328

Query: 301  IRTEEQLGDIFTKSLARVKFEELRSKIGV 330
            + T EQLGDIFTKSL R +F+ELRSKIGV
Sbjct: 1329 VGTAEQLGDIFTKSLGRTRFQELRSKIGV 1357

[Close]
BLAST of CmoCh05G002080 vs. NCBI nr
Match: gi|77551553|gb|ABA94350.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 414.5 bits (1064), Expect = 1.8e-112
Identity = 207/319 (64.89%), Postives = 255/319 (79.94%), Query Frame = 1 

Query: 1    MYTYGHGKKRLIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQN 60
            +YT   G +RL VGVYVDDLIITG     + SFK  M K F+MSDLG L YYLGIEV Q+
Sbjct: 994  VYTRTRGGRRLTVGVYVDDLIITGEHDDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQD 1053

Query: 61   SSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRY 120
            S GI++ Q+AYA K+L+  GL D NP +TPME RL+LRK      VD+T YRS+VGSLRY
Sbjct: 1054 SDGITLGQAAYAGKILEKAGLNDCNPCQTPMEVRLKLRKGSNFPLVDATLYRSLVGSLRY 1113

Query: 121  LVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVG 180
            LVN+RPDLA+SVGYVSRFME+PRE+HL AV+RILRYVAGTR WG+R+  G+      LVG
Sbjct: 1114 LVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVG 1173

Query: 181  YSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWL 240
            YSDSD+AGD D+RKSTSG I+F++GG + WQS+KQ+VVALSSCEAEYIAA+ A  QG+WL
Sbjct: 1174 YSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKQKVVALSSCEAEYIAAAAATCQGVWL 1233

Query: 241  ARLMEELIGRESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRECADRWLIKIDF 300
            ARL+ E++G E   P+L VDN++TISLIKNPV HDRSKHI++++HYIRECA++ LI++ F
Sbjct: 1234 ARLLAEVLGDEITAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRECAEKKLIEMMF 1293

Query: 301  IRTEEQLGDIFTKSLARVK 320
            + T EQLGDIFTKSL R +
Sbjct: 1294 VGTAEQLGDIFTKSLGRTR 1312

[Close]
BLAST of CmoCh05G002080 vs. NCBI nr
Match: gi|113623687|dbj|BAF23632.1| (Os08g0389500 [Oryza sativa Japonica Group])

HSP 1 Score: 413.7 bits (1062), Expect = 3.1e-112
Identity = 199/329 (60.49%), Postives = 254/329 (77.20%), Query Frame = 1 

Query: 1    MYTYGHGKKRLIVGVYVDDLIITGGDVGVLGSFKKAMSKNFEMSDLGVLSYYLGIEVQQN 60
            +YT   G+KRL+VG+YVDDLIITGG   V+ +FK  M   F MSDLGVLSYYLGIEV+Q 
Sbjct: 1123 LYTRSDGEKRLVVGIYVDDLIITGGSTEVINTFKTEMKTLFRMSDLGVLSYYLGIEVRQG 1182

Query: 61   SSGISICQSAYARKLLDTTGLVDSNPTRTPMEARLQLRKAGTTTTVDSTNYRSIVGSLRY 120
              GI + Q+AYA+K+L+  G+   NP  TPMEARL+L K  T+  VD+T YRS++GSLRY
Sbjct: 1183 RRGIELLQAAYAKKILEKAGMGTCNPCATPMEARLKLSKQSTSPAVDATEYRSLIGSLRY 1242

Query: 121  LVNSRPDLAYSVGYVSRFMEAPREEHLVAVKRILRYVAGTRGWGVRYCAGSGKEKLKLVG 180
            L+N+RPD+A++VGY+SRFME PR+EHL A+K +LRYVAGT  +G+ Y   SG  +  LVG
Sbjct: 1243 LMNTRPDMAFAVGYLSRFMENPRQEHLAAMKHLLRYVAGTIDYGLVYT--SGDTEFNLVG 1302

Query: 181  YSDSDMAGDVDDRKSTSGMIYFLSGGAICWQSTKQRVVALSSCEAEYIAASMAATQGIWL 240
            YSDSDMAGD+DDRKSTSG+IYFL G  + WQS KQRVVALSSCEAEYIA + AA QG+WL
Sbjct: 1303 YSDSDMAGDIDDRKSTSGIIYFLGGNPVAWQSQKQRVVALSSCEAEYIAGAAAACQGVWL 1362

Query: 241  ARLMEELIGRESDPPMLYVDNKATISLIKNPVLHDRSKHIEIRFHYIRECADRWLIKIDF 300
             RL+++++G    PP L +DN++ I+L KNPVLHDRSKHI+ +FH++REC D   +++ F
Sbjct: 1363 RRLLQDVVGVSGPPPQLKMDNQSAIALSKNPVLHDRSKHIDTKFHFLRECVDSGAVRLAF 1422

Query: 301  IRTEEQLGDIFTKSLARVKFEELRSKIGV 330
            + T+ QL DI TK+L R KF+ELR  IGV
Sbjct: 1423 VSTQAQLADIMTKALGRSKFQELRELIGV 1449

The following BLAST results are available for this feature:
BLAST of CmoCh05G002080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC6.6e-6241.77Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME5.6e-5335.17Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
M810_ARATH1.5e-3436.44Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
YCH4_YEAST1.5e-2633.93Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
M240_ARATH1.2e-0741.77Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana GN=AtMg0... [more]
BLAST of CmoCh05G002080 vs. TrEMBL
Match NameE-valueIdentityDescription
Q7XPB1_ORYSJ4.5e-11865.65OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0026E15.10 PE=... [more]
C7J163_ORYSJ4.5e-11865.65Os04g0196500 protein OS=Oryza sativa subsp. japonica GN=Os04g0196500 PE=4 SV=1[more]
A0B9X7_ORYSA8.5e-11765.05OSIGBa0135C09.3 protein OS=Oryza sativa GN=OSIGBa0135C09.3 PE=4 SV=1[more]
Q2R2J6_ORYSJ1.3e-11264.89Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap... [more]
Q0J5Y3_ORYSJ2.2e-11260.49Os08g0389500 protein OS=Oryza sativa subsp. japonica GN=Os08g0389500 PE=4 SV=1[more]
BLAST of CmoCh05G002080 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.11.0e-5240.50 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.18.6e-3636.44ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
ATMG00240.16.8e-0941.77ATMG00240.1 Gag-Pol-related retrotransposon family protein[more]
BLAST of CmoCh05G002080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|38344222|emb|CAE03692.2|6.4e-11865.65OSJNBb0026E15.10 [Oryza sativa Japonica Group][more]
gi|255675204|dbj|BAH92510.1|6.4e-11865.65Os04g0196500 [Oryza sativa Japonica Group][more]
gi|116634828|emb|CAH66352.1|1.2e-11665.05OSIGBa0135C09.3 [Oryza sativa Indica Group][more]
gi|77551553|gb|ABA94350.1|1.8e-11264.89retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro... [more]
gi|113623687|dbj|BAF23632.1|3.1e-11260.49Os08g0389500 [Oryza sativa Japonica Group][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009536 plastid
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G002080.1CmoCh05G002080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..93
score: 3.7
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..254
score: 2.2E
NoneNo IPR availablePANTHERPTHR11439:SF127SUBFAMILY NOT NAMEDcoord: 1..254
score: 2.2E
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 10..71
score: 3.78E-13coord: 98..285
score: 3.78

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G002080Cucurbita pepo (Zucchini)cmocpeB720
CmoCh05G002080Cucurbita pepo (Zucchini)cmocpeB734
CmoCh05G002080Cucurbita pepo (Zucchini)cmocpeB740
CmoCh05G002080Cucurbita pepo (Zucchini)cmocpeB750
CmoCh05G002080Bottle gourd (USVL1VR-Ls)cmolsiB708
CmoCh05G002080Bottle gourd (USVL1VR-Ls)cmolsiB715
CmoCh05G002080Bottle gourd (USVL1VR-Ls)cmolsiB731
CmoCh05G002080Cucumber (Gy14) v2cgybcmoB238
CmoCh05G002080Cucumber (Gy14) v2cgybcmoB832
CmoCh05G002080Melon (DHL92) v3.6.1cmomedB815
CmoCh05G002080Melon (DHL92) v3.6.1cmomedB826
CmoCh05G002080Melon (DHL92) v3.6.1cmomedB832
CmoCh05G002080Silver-seed gourdcarcmoB0147
CmoCh05G002080Silver-seed gourdcarcmoB0263
CmoCh05G002080Silver-seed gourdcarcmoB0375
CmoCh05G002080Silver-seed gourdcarcmoB1047
CmoCh05G002080Silver-seed gourdcarcmoB1097
CmoCh05G002080Cucumber (Chinese Long) v3cmocucB0918
CmoCh05G002080Cucumber (Chinese Long) v3cmocucB0933
CmoCh05G002080Cucumber (Chinese Long) v3cmocucB0945
CmoCh05G002080Watermelon (97103) v2cmowmbB777
CmoCh05G002080Watermelon (97103) v2cmowmbB802
CmoCh05G002080Wax gourdcmowgoB0944
CmoCh05G002080Wax gourdcmowgoB0953
CmoCh05G002080Wax gourdcmowgoB0960
CmoCh05G002080Cucurbita maxima (Rimu)cmacmoB483
CmoCh05G002080Cucurbita moschata (Rifu)cmocmoB033
CmoCh05G002080Cucurbita moschata (Rifu)cmocmoB156
CmoCh05G002080Cucurbita moschata (Rifu)cmocmoB369
CmoCh05G002080Cucurbita moschata (Rifu)cmocmoB481
CmoCh05G002080Cucumber (Gy14) v1cgycmoB0232
CmoCh05G002080Cucumber (Gy14) v1cgycmoB0643
CmoCh05G002080Cucurbita maxima (Rimu)cmacmoB199
CmoCh05G002080Cucurbita maxima (Rimu)cmacmoB662
CmoCh05G002080Cucurbita maxima (Rimu)cmacmoB786
CmoCh05G002080Cucurbita maxima (Rimu)cmacmoB871
CmoCh05G002080Wild cucumber (PI 183967)cmocpiB782
CmoCh05G002080Wild cucumber (PI 183967)cmocpiB807
CmoCh05G002080Cucumber (Chinese Long) v2cmocuB777
CmoCh05G002080Cucumber (Chinese Long) v2cmocuB802
CmoCh05G002080Melon (DHL92) v3.5.1cmomeB718
CmoCh05G002080Melon (DHL92) v3.5.1cmomeB735
CmoCh05G002080Watermelon (Charleston Gray)cmowcgB716
CmoCh05G002080Watermelon (97103) v1cmowmB748
CmoCh05G002080Watermelon (97103) v1cmowmB753