CmoCh05G002010 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G002010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionT1G11.9 protein
LocationCmo_Chr05 : 873078 .. 873470 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCACAGCAAGTTAAGCACCTCTGATATTGATGTGAGAACGTTGAAGTTCTTACTTGCTCTTCTCCGTAGCTACAAGCTTTCTGGAGTCGAAAAGGTGAAGGGATTCTGCAGAAAACTAATATCTGAAACATTGGTGATCATCTCGTGCATGAAACATCTTTATGCATCTAATGAGATGGAGGAGGTCATCTTGGAATTGGAAAAGCTTTTTATCTCAGGACCAACGGCCTCAGATGCTCTGTTATATGAATGCAAATCAGGTTTGGTTCCTTTCTTGGCAGGACTTGCACACATTAAAATGATAGAAACCGATGATAATGCAAAAAGCTGTGCTGTGTGGGAGTTATATCATATGTTATTTAAAGAGCGGCATTGGGCATTTCANTAG

mRNA sequence

ATGTTCCACAGCAAGTTAAGCACCTCTGATATTGATGTGAGAACGTTGAAGTTCTTACTTGCTCTTCTCCGTAGCTACAAGCTTTCTGGAGTCGAAAAGGTGAAGGGATTCTGCAGAAAACTAATATCTGAAACATTGGTGATCATCTCGTGCATGAAACATCTTTATGCATCTAATGAGATGGAGGAGGTCATCTTGGAATTGGAAAAGCTTTTTATCTCAGGACCAACGGCCTCAGATGCTCTGTTATATGAATGCAAATCAGGTTTGGTTCCTTTCTTGGCAGGACTTGCACACATTAAAATGATAGAAACCGATGATAATGCAAAAAGCTGTGCTGTGTGGGAGTTATATCATATGTTATTTAAAGAGCGGCATTGGGCATTTCANTAG

Coding sequence (CDS)

ATGTTCCACAGCAAGTTAAGCACCTCTGATATTGATGTGAGAACGTTGAAGTTCTTACTTGCTCTTCTCCGTAGCTACAAGCTTTCTGGAGTCGAAAAGGTGAAGGGATTCTGCAGAAAACTAATATCTGAAACATTGGTGATCATCTCGTGCATGAAACATCTTTATGCATCTAATGAGATGGAGGAGGTCATCTTGGAATTGGAAAAGCTTTTTATCTCAGGACCAACGGCCTCAGATGCTCTGTTATATGAATGCAAATCAGGTTTGGTTCCTTTCTTGGCAGGACTTGCACACATTAAAATGATAGAAACCGATGATAATGCAAAAAGCTGTGCTGTGTGGGAGTTATATCATATGTTATTTAAAGAGCGGCATTGGGCATTTCANTAG
Homology
[Close]
BLAST of CmoCh05G002010 vs. TrEMBL
Match: A0A0A0L4S9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133240 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.0e-57
Identity = 115/125 (92.00%), Postives = 117/125 (93.60%), Query Frame = 1 

Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLRSYK+SGVE+ KG CRKLISETL IISCMKHLYA NEMEEV
Sbjct: 596 KLSTSDIDVRTLKFLLALLRSYKISGVEQAKGVCRKLISETLGIISCMKHLYAVNEMEEV 655

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKS L PFLAGLAH KM ETDDNAKSCAVWELYHMLFKE
Sbjct: 656 ILELEKLFISGPTASDALLYECKSSLAPFLAGLAHSKMTETDDNAKSCAVWELYHMLFKE 715

Query: 125 RHWAF 130
           RHWAF
Sbjct: 716 RHWAF 720

[Close]
BLAST of CmoCh05G002010 vs. TrEMBL
Match: A5BCA3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020905 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.8e-37
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 1 

Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           ++ TSDID +TL+FL+A+++ Y+ S    +K  CRKL+SETL I+S MKHLYAS+ MEEV
Sbjct: 568 EVKTSDIDTKTLRFLVAIIQKYRSSMDNLMKDHCRKLLSETLGIVSNMKHLYASDAMEEV 627

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILEL+ LFISG  ASD  LYECK  L  FLAGLA++K++E+D NAKS AVWELY ML  E
Sbjct: 628 ILELQNLFISGQAASDTQLYECKPDLASFLAGLAYMKIVESDKNAKSSAVWELYRMLLSE 687

Query: 125 RHWAF 130
           RHWAF
Sbjct: 688 RHWAF 692

[Close]
BLAST of CmoCh05G002010 vs. TrEMBL
Match: F6HS50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00490 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.8e-37
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 1 

Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           ++ TSDID +TL+FL+A+++ Y+ S    +K  CRKL+SETL I+S MKHLYAS+ MEEV
Sbjct: 466 EVKTSDIDTKTLRFLVAIIQKYRSSMDNLMKDHCRKLLSETLGIVSNMKHLYASDAMEEV 525

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILEL+ LFISG  ASD  LYECK  L  FLAGLA++K++E+D NAKS AVWELY ML  E
Sbjct: 526 ILELQNLFISGQAASDTQLYECKPDLASFLAGLAYMKIVESDKNAKSSAVWELYRMLLSE 585

Query: 125 RHWAF 130
           RHWAF
Sbjct: 586 RHWAF 590

[Close]
BLAST of CmoCh05G002010 vs. TrEMBL
Match: M5Y8V3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017979mg PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 77/124 (62.10%), Postives = 99/124 (79.84%), Query Frame = 1 

Query: 6   LSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEVI 65
           +S SDIDV+TLKFL+A++ +Y++S  + +K    KL+SETL IIS M HLYAS+EME+VI
Sbjct: 708 ISISDIDVKTLKFLVAIIHNYRVSSDKLMKEHYSKLLSETLGIISKMNHLYASDEMEKVI 767

Query: 66  LELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKER 125
            ELE LFISGP ASD  LYECK  L  F+AGLAH+++ ET+ +AK+ A+WELYHML +ER
Sbjct: 768 FELENLFISGPAASDTQLYECKPNLALFMAGLAHMEINETNQSAKTSALWELYHMLLRER 827

Query: 126 HWAF 130
           HWAF
Sbjct: 828 HWAF 831

[Close]
BLAST of CmoCh05G002010 vs. TrEMBL
Match: B9RWN6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1022970 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-32
Identity = 72/124 (58.06%), Postives = 97/124 (78.23%), Query Frame = 1 

Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           ++S SD+D+++L FL+  +R++K +  + +K    KL++ETL IIS +KHLY S+E+EEV
Sbjct: 604 QVSISDVDMKSLNFLVTTIRNFKNAVHKLMKEHYHKLLNETLGIISNLKHLYKSDEIEEV 663

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILEL+ LFISGP ASD LLY+CK  L+ F+ GL  + M E+D+ AKSCAVWELYHMLFKE
Sbjct: 664 ILELQNLFISGPAASDPLLYQCKPYLLLFMGGLGDMDMSESDNCAKSCAVWELYHMLFKE 723

Query: 125 RHWA 129
           RHWA
Sbjct: 724 RHWA 727

[Close]
BLAST of CmoCh05G002010 vs. TAIR10
Match: AT1G04650.1 (AT1G04650.1 unknown protein)

HSP 1 Score: 104.8 bits (260), Expect = 4.2e-23
Identity = 58/124 (46.77%), Postives = 78/124 (62.90%), Query Frame = 1 

Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           K+S S+ID +TL F++AL++ Y+ S  E  K    +++SETL IIS  + LY   EM+ V
Sbjct: 705 KMSISEIDAKTLNFVVALIQKYRNSKDETTKERYSEILSETLSIISRSEQLYTCQEMDNV 764

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           I EL+KLF S        L + K  L  FL+GL+  +M ET    KS AVWELYHML ++
Sbjct: 765 ITELQKLFNSETNHHHNHLRKSKPNLALFLSGLSKYEMSETKKCPKSIAVWELYHMLLRK 824

Query: 125 RHWA 129
           RHWA
Sbjct: 825 RHWA 828

[Close]
BLAST of CmoCh05G002010 vs. NCBI nr
Match: gi|659075918|ref|XP_008438401.1| (PREDICTED: uncharacterized protein LOC103483511 isoform X2 [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-57
Identity = 114/125 (91.20%), Postives = 119/125 (95.20%), Query Frame = 1 

Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLRSYK+SGVE+ KG CRKLISETL IISC++HLYA+NEMEEV
Sbjct: 703 KLSTSDIDVRTLKFLLALLRSYKISGVEQAKGVCRKLISETLGIISCVEHLYAANEMEEV 762

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKS L PFLAGLAHIKM ETDDNAKSCAVWELYHMLFKE
Sbjct: 763 ILELEKLFISGPTASDALLYECKSSLAPFLAGLAHIKMTETDDNAKSCAVWELYHMLFKE 822

Query: 125 RHWAF 130
           RHWAF
Sbjct: 823 RHWAF 827

[Close]
BLAST of CmoCh05G002010 vs. NCBI nr
Match: gi|659075920|ref|XP_008438402.1| (PREDICTED: uncharacterized protein LOC103483511 isoform X3 [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-57
Identity = 114/125 (91.20%), Postives = 119/125 (95.20%), Query Frame = 1 

Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLRSYK+SGVE+ KG CRKLISETL IISC++HLYA+NEMEEV
Sbjct: 512 KLSTSDIDVRTLKFLLALLRSYKISGVEQAKGVCRKLISETLGIISCVEHLYAANEMEEV 571

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKS L PFLAGLAHIKM ETDDNAKSCAVWELYHMLFKE
Sbjct: 572 ILELEKLFISGPTASDALLYECKSSLAPFLAGLAHIKMTETDDNAKSCAVWELYHMLFKE 631

Query: 125 RHWAF 130
           RHWAF
Sbjct: 632 RHWAF 636

[Close]
BLAST of CmoCh05G002010 vs. NCBI nr
Match: gi|659075916|ref|XP_008438400.1| (PREDICTED: uncharacterized protein LOC103483511 isoform X1 [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-57
Identity = 114/125 (91.20%), Postives = 119/125 (95.20%), Query Frame = 1 

Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLRSYK+SGVE+ KG CRKLISETL IISC++HLYA+NEMEEV
Sbjct: 703 KLSTSDIDVRTLKFLLALLRSYKISGVEQAKGVCRKLISETLGIISCVEHLYAANEMEEV 762

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKS L PFLAGLAHIKM ETDDNAKSCAVWELYHMLFKE
Sbjct: 763 ILELEKLFISGPTASDALLYECKSSLAPFLAGLAHIKMTETDDNAKSCAVWELYHMLFKE 822

Query: 125 RHWAF 130
           RHWAF
Sbjct: 823 RHWAF 827

[Close]
BLAST of CmoCh05G002010 vs. NCBI nr
Match: gi|778677956|ref|XP_011650890.1| (PREDICTED: uncharacterized protein LOC101206663 isoform X1 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 1.4e-57
Identity = 115/125 (92.00%), Postives = 117/125 (93.60%), Query Frame = 1 

Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLRSYK+SGVE+ KG CRKLISETL IISCMKHLYA NEMEEV
Sbjct: 703 KLSTSDIDVRTLKFLLALLRSYKISGVEQAKGVCRKLISETLGIISCMKHLYAVNEMEEV 762

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKS L PFLAGLAH KM ETDDNAKSCAVWELYHMLFKE
Sbjct: 763 ILELEKLFISGPTASDALLYECKSSLAPFLAGLAHSKMTETDDNAKSCAVWELYHMLFKE 822

Query: 125 RHWAF 130
           RHWAF
Sbjct: 823 RHWAF 827

[Close]
BLAST of CmoCh05G002010 vs. NCBI nr
Match: gi|700201640|gb|KGN56773.1| (hypothetical protein Csa_3G133240 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 1.4e-57
Identity = 115/125 (92.00%), Postives = 117/125 (93.60%), Query Frame = 1 

Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLRSYK+SGVE+ KG CRKLISETL IISCMKHLYA NEMEEV
Sbjct: 596 KLSTSDIDVRTLKFLLALLRSYKISGVEQAKGVCRKLISETLGIISCMKHLYAVNEMEEV 655

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKS L PFLAGLAH KM ETDDNAKSCAVWELYHMLFKE
Sbjct: 656 ILELEKLFISGPTASDALLYECKSSLAPFLAGLAHSKMTETDDNAKSCAVWELYHMLFKE 715

Query: 125 RHWAF 130
           RHWAF
Sbjct: 716 RHWAF 720

The following BLAST results are available for this feature:
BLAST of CmoCh05G002010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh05G002010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4S9_CUCSA1.0e-5792.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133240 PE=4 SV=1[more]
A5BCA3_VITVI9.8e-3763.20Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020905 PE=4 SV=1[more]
F6HS50_VITVI9.8e-3763.20Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00490 PE=4 SV=... [more]
M5Y8V3_PRUPE1.1e-3562.10Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017979mg PE=4 SV=1[more]
B9RWN6_RICCO1.5e-3258.06Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1022970 PE=4 SV=1[more]
BLAST of CmoCh05G002010 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G04650.14.2e-2346.77 unknown protein[more]
BLAST of CmoCh05G002010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075918|ref|XP_008438401.1|1.1e-5791.20PREDICTED: uncharacterized protein LOC103483511 isoform X2 [Cucumis melo][more]
gi|659075920|ref|XP_008438402.1|1.1e-5791.20PREDICTED: uncharacterized protein LOC103483511 isoform X3 [Cucumis melo][more]
gi|659075916|ref|XP_008438400.1|1.1e-5791.20PREDICTED: uncharacterized protein LOC103483511 isoform X1 [Cucumis melo][more]
gi|778677956|ref|XP_011650890.1|1.4e-5792.00PREDICTED: uncharacterized protein LOC101206663 isoform X1 [Cucumis sativus][more]
gi|700201640|gb|KGN56773.1|1.4e-5792.00hypothetical protein Csa_3G133240 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027902DUF4487
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G002010.1CmoCh05G002010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027902Protein of unknown function DUF4487PFAMPF14868DUF4487coord: 14..129
score: 2.4
NoneNo IPR availablePANTHERPTHR36702FAMILY NOT NAMEDcoord: 6..129
score: 4.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G002010Melon (DHL92) v3.6.1cmomedB815
CmoCh05G002010Melon (DHL92) v3.6.1cmomedB826
CmoCh05G002010Silver-seed gourdcarcmoB0147
CmoCh05G002010Silver-seed gourdcarcmoB0263
CmoCh05G002010Silver-seed gourdcarcmoB0375
CmoCh05G002010Silver-seed gourdcarcmoB1047
CmoCh05G002010Cucumber (Chinese Long) v3cmocucB0918
CmoCh05G002010Cucumber (Chinese Long) v3cmocucB0933
CmoCh05G002010Watermelon (97103) v2cmowmbB802
CmoCh05G002010Wax gourdcmowgoB0944
CmoCh05G002010Wax gourdcmowgoB0960
CmoCh05G002010Cucurbita maxima (Rimu)cmacmoB483
CmoCh05G002010Cucurbita moschata (Rifu)cmocmoB033
CmoCh05G002010Cucurbita moschata (Rifu)cmocmoB156
CmoCh05G002010Cucurbita moschata (Rifu)cmocmoB369
CmoCh05G002010Cucumber (Gy14) v1cgycmoB0643
CmoCh05G002010Cucurbita maxima (Rimu)cmacmoB199
CmoCh05G002010Cucurbita maxima (Rimu)cmacmoB786
CmoCh05G002010Wild cucumber (PI 183967)cmocpiB782
CmoCh05G002010Wild cucumber (PI 183967)cmocpiB795
CmoCh05G002010Cucumber (Chinese Long) v2cmocuB777
CmoCh05G002010Melon (DHL92) v3.5.1cmomeB718
CmoCh05G002010Melon (DHL92) v3.5.1cmomeB729
CmoCh05G002010Watermelon (Charleston Gray)cmowcgB716
CmoCh05G002010Watermelon (97103) v1cmowmB748
CmoCh05G002010Watermelon (97103) v1cmowmB753
CmoCh05G002010Cucurbita pepo (Zucchini)cmocpeB720
CmoCh05G002010Cucurbita pepo (Zucchini)cmocpeB734
CmoCh05G002010Cucurbita pepo (Zucchini)cmocpeB740
CmoCh05G002010Cucurbita pepo (Zucchini)cmocpeB750
CmoCh05G002010Bottle gourd (USVL1VR-Ls)cmolsiB715
CmoCh05G002010Bottle gourd (USVL1VR-Ls)cmolsiB731
CmoCh05G002010Cucumber (Gy14) v2cgybcmoB238
CmoCh05G002010Cucumber (Gy14) v2cgybcmoB533