CmoCh05G000030 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G000030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cmo_Chr05 : 13032 .. 15153 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAACAGTGCAAAAGCAATCATTCAACACCCACTCCCCGAGCTTTCTCATTGGGTAACTATTTCAAAAGGAAAGATTTTTTTTGGTGATTCTTCACGGTCAGGTCATGGCGGGTCGGAGGCTATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCGCCTGCTCTCCTTTCCAAAGGTAACACAAACACTGAAACAATCGGTCATCATGTTTAATTTTAAGCTTTTTTTGGTAAATCTTTCCAGTTTTTCTAATCCGCAAACAGAGAGATCGATCGATTAAAGGAAAAAAATAAACAAATAAAGCGTATGAAAATTTTCATCTTTGACAAGTCCGTGAAGCGAATCAAGGGATCGGGTAGAGCTGTATCTCCTTCCTTTGTGTGCGGATGTGATGAGTGGGCATGTTATGATAAGAGAAAAGTTGCAGTTTTGAATGTTGTTTTTATGCCCCTCTGTTATTTTGGATCATTCTTCTAATCCTGCTTTTTATAGATCCTTAACTGTTAACTGATTGGAACTCTGTTTGATCAGGGAGGAGGCCTTCGGGAGGCACAACAACTGGCAAATATAGCACTTCGGCTGCTGTTGAAACCCCGATTACTCCATCCGTGAAAGTGAATTACACCCAGCTATTAATCAACGGACAGTTTCTGGATTCAATCTCAGGTACAGTTTCTCAAATCATTGAAATTTGTCCATGTTAAATAAAAGCTCTGCCTTATTTAGTTAGGTTTGTCAAAACATATGAGTTCACGCGAATGGAGGAGCGTGATTCTAGGGGCCATTGTTTTGGCAGAGTGGCGGAGTCTTCGTCCACTTATTCTATTTTTGTATATTTAGTTTTTCTATTTTTGTAATTAGATTTATTATTTAAACCATTCAACGGATGTAAAATAAAGATATCGAGTCTTCAGCATTACCAGCGAATCTCTCTCTCTCTCCTTTTACTTCCGCTAATTTTTCCTTCGAAGAAACCTTCGGCCAATTTTTTCGTCGACATCCGATTTGCCAGAGTCAACAAGTGGTATCAGAGCCTGGTTGAAGCGATCGGTAGTATACCATCACAGAAGAGCCAACCTATCAACAATCAAGTTGAATAGCTCAAGTGGTTAGAGCGTCGACCTAATAACACACAGGTCTTAGGTTCGAGTAGAAGAAAATGCAAAGCGCAAAAATAAATACATCGTGGGGCCCATCTCAAGCAGGCTCGCTCACTCCTCCACGCCGCCAAGTGCCGGCATCTCCATCACCACCACGAAGAGGCCGTGGCCGACATCGTGATGACGGGCGTCGAGTAGTTGTTGAGCGAGTGATCAGAGAGACAACGACCGCCGTCGTTCAGTACCCGATGTTGACAAGGTCCAACTACAACGAGTGGGCCTTGTTGATGCGCGTTAACCTACAGGCGCAAGGGTTATGGCACGCTGTCGAGCCAGAGGAAGGAGAAACAATCGAGTACCGGGAGGATCGGCTGGCGTTCGCCGCCATATTACGATCTGTGCCCCCAGAGATGCTGGCTTCTCTTTCCACCAAGCGCACCGCACAATCGGCCTGGGAGGGAATCAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATCGAGCAACTTCGGAAGGAGCTCTCGGAGATTCGCTTTAAGGACGGCGAATCCGTCGATGATTTTTCAATGCGGATCACGGGGCTCGCCAACAGCATCACCACCCTCGGTGGTGGCATCAGCGAGACAGAAATCGTGAAGAAGATGTTGCAGGTCGTTCCCGATCACCTCGAGCAAGTCGCGATTTCAATCGAGACATTGCTTGACGTGAACGACCTAACAGTGGAAGAGGTGACCGGAAGACTACGTAACGTCGAGCAGCGGAAGAAGAATATCACTTCAGCTGTTGACAAGGAGGGCCGTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCGCGACAACACCGGCGAGAGCAACGGGTCCTCCTCCAGCCGCAAAGGCGGTAAGAAGCCATGGATGTCCCACGGGCGCACGCGCGGGAAAGATGGGAATCAAAAGAAGGAGTCGACCGGCCGATCCAATGCTCGAACTGTGGGAAGAGAGGACACCTGA

mRNA sequence

AAAAAAAAAAAAAAAACAGTGCAAAAGCAATCATTCAACACCCACTCCCCGAGCTTTCTCATTGGGTAACTATTTCAAAAGGAAAGATTTTTTTTGGTGATTCTTCACGGTCAGGTCATGGCGGGTCGGAGGCTATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCGCCTGCTCTCCTTTCCAAAGGGAGGAGGCCTTCGGGAGGCACAACAACTGGCAAATATAGCACTTCGGCTGCTGTTGAAACCCCGATTACTCCATCCGTGAAAGTGAATTACACCCAGCTATTAATCAACGGACAGTTTCTGGATTCAATCTCAGGCTCGCTCACTCCTCCACGCCGCCAAGTGCCGGCATCTCCATCACCACCACGAAGAGGCCGTGGCCGACATCGTGATGACGGGCGTCGAGTAGTTGTTGAGCGAGTGATCAGAGAGACAACGACCGCCGTCGTTCAGTACCCGATGTTGACAAGGTCCAACTACAACGAGTGGGCCTTGTTGATGCGCGTTAACCTACAGGCGCAAGGGTTATGGCACGCTGTCGAGCCAGAGGAAGGAGAAACAATCGAGTACCGGGAGGATCGGCTGGCGTTCGCCGCCATATTACGATCTGTGCCCCCAGAGATGCTGGCTTCTCTTTCCACCAAGCGCACCGCACAATCGGCCTGGGAGGGAATCAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATCGAGCAACTTCGGAAGGAGCTCTCGGAGATTCGCTTTAAGGACGGCGAATCCGTCGATGATTTTTCAATGCGGATCACGGGGCTCGCCAACAGCATCACCACCCTCGGTGGTGGCATCAGCGAGACAGAAATCGTGAAGAAGATGTTGCAGGTCGTTCCCGATCACCTCGAGCAAGTCGCGATTTCAATCGAGACATTGCTTGACGTGAACGACCTAACAGTGGAAGAGGTGACCGGAAGACTACGTAACGTCGAGCAGCGGAAGAAGAATATCACTTCAGCTGTTGACAAGGAGGGCCGTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCGCGACAACACCGGCGAGAGCAACGGGTCCTCCTCCAGCCGCAAAGGCGGTAAGAAGCCATGGATGTCCCACGGGCGCACGCGCGGGAAAGATGGGAATCAAAAGAAGGAGTCGACCGGCCGATCCAATGCTCGAACTGTGGGAAGAGAGGACACCTGA

Coding sequence (CDS)

ATGGCGGGTCGGAGGCTATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCGCCTGCTCTCCTTTCCAAAGGGAGGAGGCCTTCGGGAGGCACAACAACTGGCAAATATAGCACTTCGGCTGCTGTTGAAACCCCGATTACTCCATCCGTGAAAGTGAATTACACCCAGCTATTAATCAACGGACAGTTTCTGGATTCAATCTCAGGCTCGCTCACTCCTCCACGCCGCCAAGTGCCGGCATCTCCATCACCACCACGAAGAGGCCGTGGCCGACATCGTGATGACGGGCGTCGAGTAGTTGTTGAGCGAGTGATCAGAGAGACAACGACCGCCGTCGTTCAGTACCCGATGTTGACAAGGTCCAACTACAACGAGTGGGCCTTGTTGATGCGCGTTAACCTACAGGCGCAAGGGTTATGGCACGCTGTCGAGCCAGAGGAAGGAGAAACAATCGAGTACCGGGAGGATCGGCTGGCGTTCGCCGCCATATTACGATCTGTGCCCCCAGAGATGCTGGCTTCTCTTTCCACCAAGCGCACCGCACAATCGGCCTGGGAGGGAATCAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATCGAGCAACTTCGGAAGGAGCTCTCGGAGATTCGCTTTAAGGACGGCGAATCCGTCGATGATTTTTCAATGCGGATCACGGGGCTCGCCAACAGCATCACCACCCTCGGTGGTGGCATCAGCGAGACAGAAATCGTGAAGAAGATGTTGCAGGTCGTTCCCGATCACCTCGAGCAAGTCGCGATTTCAATCGAGACATTGCTTGACGTGAACGACCTAACAGTGGAAGAGGTGACCGGAAGACTACGTAACGTCGAGCAGCGGAAGAAGAATATCACTTCAGCTGTTGACAAGGAGGGCCGTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCGCGACAACACCGGCGAGAGCAACGGGTCCTCCTCCAGCCGCAAAGGCGGTAAGAAGCCATGGATGTCCCACGGGCGCACGCGCGGGAAAGATGGGAATCAAAAGAAGGAGTCGACCGGCCGATCCAATGCTCGAACTGTGGGAAGAGAGGACACCTGA

Homology

[Close]

BLAST of CmoCh05G000030 vs. Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-09
Identity = 54/135 (40.00%), Postives = 71/135 (52.59%), Query Frame = 1


Query: 1   MAGRRLSSLLSRSLASSPALL--SKGRRPSGGTTTGKYSTS-AAVETPITPSVKVNYTQL 60
           MA RR+SSLLSRS ++S  LL  S+GR    G    ++ TS AA E  I PSV+V++TQL
Sbjct: 1   MAARRVSSLLSRSFSASSPLLFRSQGRNCYNGGILRRFGTSSAAAEEIINPSVQVSHTQL 60

Query: 61  LINGQFLDSISGSLTPPRRQVPASPSPPRRGRG-RHRDDGRRVVVERVIRETTTAVVQYP 120
           LING F+DS SG   P           PR G    H  +G    + R ++   TA  + P
Sbjct: 61  LINGNFVDSASGKTFP--------TLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGP 120

Query: 121 MLTRSNYNEWALLMR 132
               S Y    +L+R
Sbjct: 121 WPKMSAYERSRVLLR 127

[Close]

BLAST of CmoCh05G000030 vs. Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 5.1e-07
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 1  MAGRRLSSLLSRSLASSPALLSKGRRPSGGTTTGKYST-SAAVETPITPSVKVNYTQLLI 60
          MA RR+SSLLSRS  SS   +   R  + G    +YS  +AAVE  ITP VKV +TQLLI
Sbjct: 1  MASRRVSSLLSRSFMSSSRSIFSLRGMNRGAQ--RYSNLAAAVENTITPPVKVEHTQLLI 60

Query: 61 NGQFLDSISGSLTP 74
           G+F+D++SG   P
Sbjct: 61 GGRFVDAVSGKTFP 72

[Close]

BLAST of CmoCh05G000030 vs. TrEMBL
Match: Q7XPB1_ORYSJ (OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0026E15.10 PE=4 SV=2)

HSP 1 Score: 297.0 bits (759), Expect = 3.2e-77
Identity = 175/301 (58.14%), Postives = 221/301 (73.42%), Query Frame = 1


Query: 70  SLTPPRRQVPASPSPPRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALL 129
           S +PPRR+   SPSP R   GRH   G +VVVERV+RE TT+ V YP LTR+NY +WAL+
Sbjct: 9   SHSPPRRRW-RSPSPRR---GRHGGRG-QVVVERVVREATTSSVVYPTLTRTNYQDWALV 68

Query: 130 MRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIK 189
           MRVN+QAQ LW AVEPE  + ++YR+D+ A AAILR+VP EMLA+L+ K TAQ AWE IK
Sbjct: 69  MRVNMQAQCLWGAVEPEGDDLVDYRQDQQALAAILRAVPAEMLATLAVKETAQEAWEAIK 128

Query: 190 SRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVK 249
           +RR+GVQRVRE+N +QLR+E  +I FKD E+VDDFSMRI GLAN++ TLG  I+E E+V+
Sbjct: 129 TRRIGVQRVREANAQQLRREFGDILFKDDETVDDFSMRIGGLANNLRTLGDNITEAEVVQ 188

Query: 250 KMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQRKKNITSA----VDKEGRLL 309
           K+LQVVP+HL+Q+AISIETLLDVN+L++EEVTGRLR+VEQRK+  T+A    VD  GRLL
Sbjct: 189 KLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQRKQCKTAAASSRVDANGRLL 248

Query: 310 LTEEEWLARLK----LRDNTGESNGSSSSRKGGKKPWMSHGRTRGK--DGNQKKESTGRS 361
            TEEEWLA+ +    L+D    S+G+   R          GR RGK  DG  K+     +
Sbjct: 249 FTEEEWLAKFRKAASLQDAAHSSSGNGDRR----------GRGRGKKDDGAPKEAQPKPA 294

[Close]

BLAST of CmoCh05G000030 vs. TrEMBL
Match: Q0J5Y3_ORYSJ (Os08g0389500 protein OS=Oryza sativa subsp. japonica GN=Os08g0389500 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 9.7e-74
Identity = 154/289 (53.29%), Postives = 212/289 (73.36%), Query Frame = 1


Query: 70  SLTPPRRQVPASPSPPRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALL 129
           S TPPRR+  +    P RGRG     G +++V R I+E   A +QYP LTR+NY+EWA+L
Sbjct: 12  SHTPPRRRRLSISPEPTRGRG-----GPKIIVRRTIKEAN-ATIQYPTLTRTNYDEWAML 71

Query: 130 MRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIK 189
           M+VN++A G+W+AVEP   E +EYR+DRLA AAILRSVP EML +L  KR+A++AW+ IK
Sbjct: 72  MQVNMEAAGIWYAVEPYPDEEVEYRDDRLALAAILRSVPSEMLPTLRGKRSARAAWDAIK 131

Query: 190 SRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVK 249
           + RVGV+RVRES  +QLR+E + + +K+GE+ +DFS+RITGLAN++ TLG  IS+ ++V+
Sbjct: 132 TIRVGVERVRESKAQQLRREFAALTWKEGETAEDFSVRITGLANNLRTLGDNISDADVVR 191

Query: 250 KMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQRKKNITSAVDKEGRLLLTEE 309
           KML VVP+HLEQ+A+++ETLLD+N ++VEEVTGRLR VEQR+      V+ +GRLLLT+E
Sbjct: 192 KMLDVVPEHLEQIAVAVETLLDLNTVSVEEVTGRLRAVEQRRHRSAPVVNNQGRLLLTQE 251

Query: 310 EWLARLKLRDNTGESNGSSSSRKGG-KKPWMSHGRTRGKDGNQKKESTG 358
           EW+A+LK    +GE    S S  GG K+   S    RGK G+++    G
Sbjct: 252 EWMAKLKNPGASGEKGTPSGSGGGGNKRTGGSRRHDRGKGGSRQAAGPG 294

[Close]

BLAST of CmoCh05G000030 vs. TrEMBL
Match: Q01HC5_ORYSA (H0807C06-H0308C08.8 protein OS=Oryza sativa GN=H0807C06-H0308C08.8 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.8e-73
Identity = 159/279 (56.99%), Postives = 203/279 (72.76%), Query Frame = 1


Query: 85  PRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALLMRVNLQAQGLWHAVE 144
           P   RGRH   G +VVV+RV+RE TT+ V YP LTR+NY +W L+MRVN+QAQGLW AVE
Sbjct: 83  PSPRRGRHGGSG-QVVVDRVVREVTTSSVVYPTLTRTNYQDWVLVMRVNMQAQGLWGAVE 142

Query: 145 PEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIKSRRVGVQRVRESNIE 204
           PE  + ++YR+DR A  AILR+VP EMLA+L+ K T Q AWE IK+RR+GVQ VRE+N +
Sbjct: 143 PEGDDLVDYRQDRQALTAILRAVPAEMLATLAVKETVQEAWEAIKTRRIGVQHVREANAQ 202

Query: 205 QLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVKKMLQVVPDHLEQVAI 264
           QLR+E  +I FKDGE+VDDFSMRI  LAN++ TLG  I+E E+V+K+LQVVP+HL+Q+AI
Sbjct: 203 QLRREFGDILFKDGETVDDFSMRIGVLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAI 262

Query: 265 SIETLLDVNDLTVEEVTGRLRNVEQRKKN----ITSAVDKEGRLLLTEEEWLARLK---- 324
           SIETLLDVN+L++EEVTGRLR+VEQ K+      +S VD  G LL TEEEWLA+ +    
Sbjct: 263 SIETLLDVNELSLEEVTGRLRSVEQSKQRKAVAASSRVDAYGCLLFTEEEWLAKFRKAAS 322

Query: 325 LRDNTGESNGSSSSRKGGKKPWMSHGRTRGKDGNQKKES 356
           L+D    S+G +S  +G       HG    KD    KE+
Sbjct: 323 LQDAAHSSSGGNSDGQG-----QGHG---NKDDGASKET 352

[Close]

BLAST of CmoCh05G000030 vs. TrEMBL
Match: Q7X7K3_ORYSJ (OSJNBb0046P18.1 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0046P18.1 PE=4 SV=2)

HSP 1 Score: 282.0 bits (720), Expect = 1.1e-72
Identity = 159/284 (55.99%), Postives = 204/284 (71.83%), Query Frame = 1


Query: 85  PRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALLMRVNLQAQGLWHAVE 144
           P   RGRH   G +VVV RV+RE TT+ V YP LTR+NY +W L+MRVN+QAQGLW AVE
Sbjct: 83  PSPRRGRHGGRG-QVVVHRVVREVTTSSVVYPTLTRTNYQDWVLVMRVNMQAQGLWGAVE 142

Query: 145 PEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIKSRRVGVQRVRESNIE 204
           PE  + ++YR+DR A  AILR+VP EMLA+L+ K T Q AWE IK+RR+GVQ VRE+N +
Sbjct: 143 PEGDDLVDYRQDRQALTAILRAVPAEMLATLAVKETVQEAWEAIKTRRIGVQHVREANAQ 202

Query: 205 QLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVKKMLQVVPDHLEQVAI 264
           QLR+E  +I FKDGE+VDDFSMRI  LAN++ TLG  I++ E+V+K+LQVVP+HL+Q+AI
Sbjct: 203 QLRREFGDIIFKDGETVDDFSMRIGVLANNLRTLGDNITDAEVVQKLLQVVPEHLQQIAI 262

Query: 265 SIETLLDVNDLTVEEVTGRLRNVEQRKKN----ITSAVDKEGRLLLTEEEWLARLK---- 324
           SIETLLDVN+L++EEVTG LR+VEQRK+      +S VD  G LL TEEEWLA+ +    
Sbjct: 263 SIETLLDVNELSLEEVTGSLRSVEQRKQRKAVAASSRVDAYGCLLFTEEEWLAKFRKAAS 322

Query: 325 LRDNTGESNGSSSSRKGGKKPWMSHGRTRGKDGNQKKESTGRSN 361
           L+D    S+G +S R+G        GR    DG  K+     +N
Sbjct: 323 LQDAAHSSSGGNSDRQG-------QGRGNKDDGASKETQPKPAN 358

[Close]

BLAST of CmoCh05G000030 vs. TrEMBL
Match: Q8S5D4_ORYSJ (Putative copia-type pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNAa0079B05.14 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.7e-65
Identity = 159/301 (52.82%), Postives = 198/301 (65.78%), Query Frame = 1


Query: 66  SISGSLTPPRRQVPA------------SPSPPRRGRGRHRDDGRR---VVVERVIRETTT 125
           S S   TPPR + P             + SPP RGRGR    G R       RV+RE++ 
Sbjct: 42  SCSPPPTPPRSRSPLVRPSQTPPCHNPAESPPCRGRGR----GERQPFAAQPRVVRESSA 101

Query: 126 AVVQYPMLTRSNYNEWALLMRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPE 185
           AV  YP+LTR+NY E AL M VN QAQGLWHAVEP E E IEYR+DRL  AAILR VPPE
Sbjct: 102 AV-HYPVLTRTNYEECALFMTVNQQAQGLWHAVEPYEDEEIEYRDDRLVLAAILRVVPPE 161

Query: 186 MLASLSTKRTAQSAWEGIKSRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITG 245
           ML SLSTKRT +SAWE IK+  VG +RVRE+N + LR+E ++ RFKDGE++DDFSMRI G
Sbjct: 162 MLRSLSTKRTVKSAWEAIKTVCVGTRRVREANEQLLRREFADARFKDGENIDDFSMRIFG 221

Query: 246 LANSITTLGGGISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQR 305
           +ANSI TLGG + E ++              +AISIETLLD+ DL+++EVT RLR+VE+ 
Sbjct: 222 IANSIRTLGGDLPEIDV--------------IAISIETLLDIRDLSIKEVTVRLRSVEKC 281

Query: 306 KKNITSAVDKEGRLLLTEEEWLARLKLRDNTGESNGS---SSSRKGGKKPWMSHGRTRGK 349
           K      VD  GRL+LTEE+WLARLK R+  GES+G+   +++   GKK      R RG+
Sbjct: 282 KAKPKEVVDSGGRLMLTEEQWLARLKNREQGGESSGTTPGAAANNSGKKRGNRRRRGRGQ 323

[Close]

BLAST of CmoCh05G000030 vs. TAIR10
Match: AT3G48000.1 (AT3G48000.1 aldehyde dehydrogenase 2B4)

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-10
Identity = 54/135 (40.00%), Postives = 71/135 (52.59%), Query Frame = 1


Query: 1   MAGRRLSSLLSRSLASSPALL--SKGRRPSGGTTTGKYSTS-AAVETPITPSVKVNYTQL 60
           MA RR+SSLLSRS ++S  LL  S+GR    G    ++ TS AA E  I PSV+V++TQL
Sbjct: 1   MAARRVSSLLSRSFSASSPLLFRSQGRNCYNGGILRRFGTSSAAAEEIINPSVQVSHTQL 60

Query: 61  LINGQFLDSISGSLTPPRRQVPASPSPPRRGRG-RHRDDGRRVVVERVIRETTTAVVQYP 120
           LING F+DS SG   P           PR G    H  +G    + R ++   TA  + P
Sbjct: 61  LINGNFVDSASGKTFP--------TLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGP 120

Query: 121 MLTRSNYNEWALLMR 132
               S Y    +L+R
Sbjct: 121 WPKMSAYERSRVLLR 127

[Close]

BLAST of CmoCh05G000030 vs. TAIR10
Match: AT1G23800.1 (AT1G23800.1 aldehyde dehydrogenase 2B7)

HSP 1 Score: 57.0 bits (136), Expect = 2.9e-08
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 1  MAGRRLSSLLSRSLASSPALLSKGRRPSGGTTTGKYST-SAAVETPITPSVKVNYTQLLI 60
          MA RR+SSLLSRS  SS   +   R  + G    +YS  +AAVE  ITP VKV +TQLLI
Sbjct: 1  MASRRVSSLLSRSFMSSSRSIFSLRGMNRGAQ--RYSNLAAAVENTITPPVKVEHTQLLI 60

Query: 61 NGQFLDSISGSLTP 74
           G+F+D++SG   P
Sbjct: 61 GGRFVDAVSGKTFP 72

[Close]

BLAST of CmoCh05G000030 vs. NCBI nr
Match: gi|38344222|emb|CAE03692.2| (OSJNBb0026E15.10 [Oryza sativa Japonica Group])

HSP 1 Score: 297.0 bits (759), Expect = 4.6e-77
Identity = 175/301 (58.14%), Postives = 221/301 (73.42%), Query Frame = 1


Query: 70  SLTPPRRQVPASPSPPRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALL 129
           S +PPRR+   SPSP R   GRH   G +VVVERV+RE TT+ V YP LTR+NY +WAL+
Sbjct: 9   SHSPPRRRW-RSPSPRR---GRHGGRG-QVVVERVVREATTSSVVYPTLTRTNYQDWALV 68

Query: 130 MRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIK 189
           MRVN+QAQ LW AVEPE  + ++YR+D+ A AAILR+VP EMLA+L+ K TAQ AWE IK
Sbjct: 69  MRVNMQAQCLWGAVEPEGDDLVDYRQDQQALAAILRAVPAEMLATLAVKETAQEAWEAIK 128

Query: 190 SRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVK 249
           +RR+GVQRVRE+N +QLR+E  +I FKD E+VDDFSMRI GLAN++ TLG  I+E E+V+
Sbjct: 129 TRRIGVQRVREANAQQLRREFGDILFKDDETVDDFSMRIGGLANNLRTLGDNITEAEVVQ 188

Query: 250 KMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQRKKNITSA----VDKEGRLL 309
           K+LQVVP+HL+Q+AISIETLLDVN+L++EEVTGRLR+VEQRK+  T+A    VD  GRLL
Sbjct: 189 KLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQRKQCKTAAASSRVDANGRLL 248

Query: 310 LTEEEWLARLK----LRDNTGESNGSSSSRKGGKKPWMSHGRTRGK--DGNQKKESTGRS 361
            TEEEWLA+ +    L+D    S+G+   R          GR RGK  DG  K+     +
Sbjct: 249 FTEEEWLAKFRKAASLQDAAHSSSGNGDRR----------GRGRGKKDDGAPKEAQPKPA 294

[Close]

BLAST of CmoCh05G000030 vs. NCBI nr
Match: gi|573921935|ref|XP_006648554.1| (PREDICTED: uncharacterized protein LOC102717319 [Oryza brachyantha])

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 153/244 (62.70%), Postives = 186/244 (76.23%), Query Frame = 1


Query: 70  SLTPPRRQVPASPSPPRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALL 129
           S TPPRR+ P SP    RGRG            R++RE++ ++ QYP+LTR+NY EWALL
Sbjct: 31  SRTPPRRRAPESPLRYERGRGYGTQP------PRIVRESSGSI-QYPVLTRTNYEEWALL 90

Query: 130 MRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIK 189
           M VNLQAQGLWHAVEP E E +EYR+DRLA AAILR+VPPEML SLS KRT+QSAWE IK
Sbjct: 91  MTVNLQAQGLWHAVEPYEDEEVEYRDDRLALAAILRAVPPEMLRSLSIKRTSQSAWEAIK 150

Query: 190 SRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVK 249
           + RVG +RVRE+N + LR+E  + RFKDGE+VDDFSMR+ G+AN+I TLGG + E ++V 
Sbjct: 151 TVRVGTRRVREANEQLLRREFGDARFKDGENVDDFSMRLNGIANNIRTLGGDLPEVDVVN 210

Query: 250 KMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQRKKNITSAVDKEGRLLLTEE 309
           K+L VVP+HL Q+AISIETLLD  DL++EEVTGRLR  E+RK      VD  GRLLLTEE
Sbjct: 211 KLLNVVPEHLSQIAISIETLLDARDLSIEEVTGRLRAAEKRKPKPKEIVDSGGRLLLTEE 267

Query: 310 EWLA 314
           +W A
Sbjct: 271 QWQA 267

[Close]

BLAST of CmoCh05G000030 vs. NCBI nr
Match: gi|113623687|dbj|BAF23632.1| (Os08g0389500 [Oryza sativa Japonica Group])

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 154/289 (53.29%), Postives = 212/289 (73.36%), Query Frame = 1


Query: 70  SLTPPRRQVPASPSPPRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALL 129
           S TPPRR+  +    P RGRG     G +++V R I+E   A +QYP LTR+NY+EWA+L
Sbjct: 12  SHTPPRRRRLSISPEPTRGRG-----GPKIIVRRTIKEAN-ATIQYPTLTRTNYDEWAML 71

Query: 130 MRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIK 189
           M+VN++A G+W+AVEP   E +EYR+DRLA AAILRSVP EML +L  KR+A++AW+ IK
Sbjct: 72  MQVNMEAAGIWYAVEPYPDEEVEYRDDRLALAAILRSVPSEMLPTLRGKRSARAAWDAIK 131

Query: 190 SRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVK 249
           + RVGV+RVRES  +QLR+E + + +K+GE+ +DFS+RITGLAN++ TLG  IS+ ++V+
Sbjct: 132 TIRVGVERVRESKAQQLRREFAALTWKEGETAEDFSVRITGLANNLRTLGDNISDADVVR 191

Query: 250 KMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQRKKNITSAVDKEGRLLLTEE 309
           KML VVP+HLEQ+A+++ETLLD+N ++VEEVTGRLR VEQR+      V+ +GRLLLT+E
Sbjct: 192 KMLDVVPEHLEQIAVAVETLLDLNTVSVEEVTGRLRAVEQRRHRSAPVVNNQGRLLLTQE 251

Query: 310 EWLARLKLRDNTGESNGSSSSRKGG-KKPWMSHGRTRGKDGNQKKESTG 358
           EW+A+LK    +GE    S S  GG K+   S    RGK G+++    G
Sbjct: 252 EWMAKLKNPGASGEKGTPSGSGGGGNKRTGGSRRHDRGKGGSRQAAGPG 294

[Close]

BLAST of CmoCh05G000030 vs. NCBI nr
Match: gi|116311092|emb|CAH68021.1| (H0807C06-H0308C08.8 [Oryza sativa Indica Group])

HSP 1 Score: 283.9 bits (725), Expect = 4.1e-73
Identity = 159/279 (56.99%), Postives = 203/279 (72.76%), Query Frame = 1


Query: 85  PRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALLMRVNLQAQGLWHAVE 144
           P   RGRH   G +VVV+RV+RE TT+ V YP LTR+NY +W L+MRVN+QAQGLW AVE
Sbjct: 83  PSPRRGRHGGSG-QVVVDRVVREVTTSSVVYPTLTRTNYQDWVLVMRVNMQAQGLWGAVE 142

Query: 145 PEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIKSRRVGVQRVRESNIE 204
           PE  + ++YR+DR A  AILR+VP EMLA+L+ K T Q AWE IK+RR+GVQ VRE+N +
Sbjct: 143 PEGDDLVDYRQDRQALTAILRAVPAEMLATLAVKETVQEAWEAIKTRRIGVQHVREANAQ 202

Query: 205 QLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVKKMLQVVPDHLEQVAI 264
           QLR+E  +I FKDGE+VDDFSMRI  LAN++ TLG  I+E E+V+K+LQVVP+HL+Q+AI
Sbjct: 203 QLRREFGDILFKDGETVDDFSMRIGVLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAI 262

Query: 265 SIETLLDVNDLTVEEVTGRLRNVEQRKKN----ITSAVDKEGRLLLTEEEWLARLK---- 324
           SIETLLDVN+L++EEVTGRLR+VEQ K+      +S VD  G LL TEEEWLA+ +    
Sbjct: 263 SIETLLDVNELSLEEVTGRLRSVEQSKQRKAVAASSRVDAYGCLLFTEEEWLAKFRKAAS 322

Query: 325 LRDNTGESNGSSSSRKGGKKPWMSHGRTRGKDGNQKKES 356
           L+D    S+G +S  +G       HG    KD    KE+
Sbjct: 323 LQDAAHSSSGGNSDGQG-----QGHG---NKDDGASKET 352

[Close]

BLAST of CmoCh05G000030 vs. NCBI nr
Match: gi|38345433|emb|CAE03285.2| (OSJNBb0046P18.1 [Oryza sativa Japonica Group])

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 159/284 (55.99%), Postives = 204/284 (71.83%), Query Frame = 1


Query: 85  PRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALLMRVNLQAQGLWHAVE 144
           P   RGRH   G +VVV RV+RE TT+ V YP LTR+NY +W L+MRVN+QAQGLW AVE
Sbjct: 83  PSPRRGRHGGRG-QVVVHRVVREVTTSSVVYPTLTRTNYQDWVLVMRVNMQAQGLWGAVE 142

Query: 145 PEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIKSRRVGVQRVRESNIE 204
           PE  + ++YR+DR A  AILR+VP EMLA+L+ K T Q AWE IK+RR+GVQ VRE+N +
Sbjct: 143 PEGDDLVDYRQDRQALTAILRAVPAEMLATLAVKETVQEAWEAIKTRRIGVQHVREANAQ 202

Query: 205 QLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVKKMLQVVPDHLEQVAI 264
           QLR+E  +I FKDGE+VDDFSMRI  LAN++ TLG  I++ E+V+K+LQVVP+HL+Q+AI
Sbjct: 203 QLRREFGDIIFKDGETVDDFSMRIGVLANNLRTLGDNITDAEVVQKLLQVVPEHLQQIAI 262

Query: 265 SIETLLDVNDLTVEEVTGRLRNVEQRKKN----ITSAVDKEGRLLLTEEEWLARLK---- 324
           SIETLLDVN+L++EEVTG LR+VEQRK+      +S VD  G LL TEEEWLA+ +    
Sbjct: 263 SIETLLDVNELSLEEVTGSLRSVEQRKQRKAVAASSRVDAYGCLLFTEEEWLAKFRKAAS 322

Query: 325 LRDNTGESNGSSSSRKGGKKPWMSHGRTRGKDGNQKKESTGRSN 361
           L+D    S+G +S R+G        GR    DG  K+     +N
Sbjct: 323 LQDAAHSSSGGNSDRQG-------QGRGNKDDGASKETQPKPAN 358

The following BLAST results are available for this feature:

BLAST of CmoCh05G000030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AL2B4_ARATH	4.1e-09	40.00	Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana...	[more]
AL2B7_ARATH	5.1e-07	51.35	Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana...	[more]

BLAST of CmoCh05G000030 vs. TrEMBL


Match Name	E-value	Identity	Description
Q7XPB1_ORYSJ	3.2e-77	58.14	OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0026E15.10 PE=...	[more]
Q0J5Y3_ORYSJ	9.7e-74	53.29	Os08g0389500 protein OS=Oryza sativa subsp. japonica GN=Os08g0389500 PE=4 SV=1	[more]
Q01HC5_ORYSA	2.8e-73	56.99	H0807C06-H0308C08.8 protein OS=Oryza sativa GN=H0807C06-H0308C08.8 PE=4 SV=1	[more]
Q7X7K3_ORYSJ	1.1e-72	55.99	OSJNBb0046P18.1 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0046P18.1 PE=4 ...	[more]
Q8S5D4_ORYSJ	1.7e-65	52.82	Putative copia-type pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNAa007...	[more]

BLAST of CmoCh05G000030 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48000.1	2.3e-10	40.00	aldehyde dehydrogenase 2B4	[more]
AT1G23800.1	2.9e-08	51.35	aldehyde dehydrogenase 2B7	[more]

BLAST of CmoCh05G000030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|38344222\|emb\|CAE03692.2\|	4.6e-77	58.14	OSJNBb0026E15.10 [Oryza sativa Japonica Group]	[more]
gi\|573921935\|ref\|XP_006648554.1\|	1.5e-75	62.70	PREDICTED: uncharacterized protein LOC102717319 [Oryza brachyantha]	[more]
gi\|113623687\|dbj\|BAF23632.1\|	1.4e-73	53.29	Os08g0389500 [Oryza sativa Japonica Group]	[more]
gi\|116311092\|emb\|CAH68021.1\|	4.1e-73	56.99	H0807C06-H0308C08.8 [Oryza sativa Indica Group]	[more]
gi\|38345433\|emb\|CAE03285.2\|	1.5e-72	55.99	OSJNBb0046P18.1 [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025314	DUF4219

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009536	plastid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G000030.1	CmoCh05G000030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 118..144 score: 1.7
None	No IPR available	unknown	Coil	Coil	coord: 277..297 scor
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 61..90 score: 1.5E-95coord: 106..348 score: 1.5
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 106..348 score: 1.5E-95coord: 61..90 score: 1.5
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 154..293 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G000030	Cp4.1LG11g00670	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G000030	Cp4.1LG07g00090	Cucurbita pepo (Zucchini)	cmocpeB746
CmoCh05G000030	Carg21803	Silver-seed gourd	carcmoB0686
CmoCh05G000030	Carg20519	Silver-seed gourd	carcmoB0860

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G000030	Cucumber (Gy14) v2	cgybcmoB672
CmoCh05G000030	Melon (DHL92) v3.6.1	cmomedB804
CmoCh05G000030	Silver-seed gourd	carcmoB0344
CmoCh05G000030	Cucumber (Chinese Long) v3	cmocucB0934
CmoCh05G000030	Watermelon (97103) v2	cmowmbB789
CmoCh05G000030	Wax gourd	cmowgoB0918
CmoCh05G000030	Wax gourd	cmowgoB0958
CmoCh05G000030	Cucurbita moschata (Rifu)	cmocmoB472
CmoCh05G000030	Cucumber (Gy14) v1	cgycmoB0801
CmoCh05G000030	Cucurbita maxima (Rimu)	cmacmoB747
CmoCh05G000030	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G000030	Wild cucumber (PI 183967)	cmocpiB797
CmoCh05G000030	Cucumber (Chinese Long) v2	cmocuB793
CmoCh05G000030	Melon (DHL92) v3.5.1	cmomeB707
CmoCh05G000030	Melon (DHL92) v3.5.1	cmomeB723
CmoCh05G000030	Watermelon (Charleston Gray)	cmowcgB690
CmoCh05G000030	Watermelon (Charleston Gray)	cmowcgB703
CmoCh05G000030	Watermelon (97103) v1	cmowmB750
CmoCh05G000030	Cucurbita pepo (Zucchini)	cmocpeB731
CmoCh05G000030	Bottle gourd (USVL1VR-Ls)	cmolsiB716