CmoCh04G030130 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G030130
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionInfluenza virus NS1A-binding protein-A-like protein
LocationCmo_Chr04 : 21171887 .. 21172837 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGCAAGCCTTGATGAATCTGTATTGATCGTGGGAGGTTTTGATGGTTCTTCTTTGTTATCAATTATGACTTGCTGGTATCCTTCCAGTGATATTATGGGATCTCTTCCTGCAATGAGGTCTGTGCATTCACACGTCTCAACAGCTAAACTTAAATAGTGAAATTTATGTTCTTAGTGGTGTTAATGGAAAAGTAGGGTATGGTAATTGTTTGTGTTAGGAACCACGGATCTCCACCATGGTACGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGACATGTATTCCTTTACTTATAAACCCACTACCATTCTCTAAATTAGCAAATGTGGGACTCACTTCCAATAATCCTCCTCTCGAACAAAGTACACTATAAGCCTCCCCTGAGGCTTATGGAGCTCTCGAACAGCCTCCTCTTAATCGAGACCCAACTCCTTTCTCTGGAGCCTTCGAACATAGTACACCATTTGTTCGACACTTTAGTCATTTTTTACTACACCTTCGAGGCTCACAATTCTTTGTTCAATATTTGAGGATTCTATTGTCATGGCTAAGTTTAGGGCATGACTCTGATTCCATGTTAGGAATAACGGATCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGTTCTCATGACTTTGTTTTGGGCTTCCAAAAGGCCTCATACCAACGGAGATGTATTTTTTTACTTATAAACTCATGATCATTCCGTAAATTAGCCAACGTGGGACTCACTCCCAACAATCCTGAATTTTTTTTTATTATTATTGTAGCACATCCTTAGGTGGGTTTAACCTATGGTTATGACATTGCAATTTTTCTTATTTATAGTTGAATCATATAGTTTAGCGGCCCATCAGTGGGTTAGTCGACCTTCATTGAATCAAAAGAAGGAAGTTTGGCTGGAGTATCCTTAA

mRNA sequence

ATGCATGCAAGCCTTGATGAATCTGTATTGATCGTGGGAGGTTTTGATGGTTCTTCTTTGTTATCAATTATGACTTGCTGGTATCCTTCCAGTGATATTATGGGATCTCTTCCTGCAATGAGTTTAGCGGCCCATCAGTGGGTTAGTCGACCTTCATTGAATCAAAAGAAGGAAGTTTGGCTGGAGTATCCTTAA

Coding sequence (CDS)

ATGCATGCAAGCCTTGATGAATCTGTATTGATCGTGGGAGGTTTTGATGGTTCTTCTTTGTTATCAATTATGACTTGCTGGTATCCTTCCAGTGATATTATGGGATCTCTTCCTGCAATGAGTTTAGCGGCCCATCAGTGGGTTAGTCGACCTTCATTGAATCAAAAGAAGGAAGTTTGGCTGGAGTATCCTTAA
Homology
[Close]
BLAST of CmoCh04G030130 vs. NCBI nr
Match: gi|659081736|ref|XP_008441487.1| (PREDICTED: ring canal kelch homolog isoform X1 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 38/89 (42.70%), Postives = 47/89 (52.81%), Query Frame = 1 

Query: 3   ASLDESVLIVGGFDGSSLLSIMTCWYPSSDIMGSLPAM----SLAA-------------- 58
           A+LDES+LI+GGFDGSS LS M C+YPS + M SLPAM    SLA+              
Sbjct: 427 ANLDESILIMGGFDGSSWLSTMNCYYPSRNSMESLPAMRFMRSLASTGKLNGEIYVLGGV 486

[Close]
BLAST of CmoCh04G030130 vs. NCBI nr
Match: gi|659081738|ref|XP_008441488.1| (PREDICTED: uncharacterized protein LOC103485594 isoform X2 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 38/89 (42.70%), Postives = 47/89 (52.81%), Query Frame = 1 

Query: 3   ASLDESVLIVGGFDGSSLLSIMTCWYPSSDIMGSLPAM----SLAA-------------- 58
           A+LDES+LI+GGFDGSS LS M C+YPS + M SLPAM    SLA+              
Sbjct: 401 ANLDESILIMGGFDGSSWLSTMNCYYPSRNSMESLPAMRFMRSLASTGKLNGEIYVLGGV 460

The following BLAST results are available for this feature:
BLAST of CmoCh04G030130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G030130 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh04G030130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G030130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081736|ref|XP_008441487.1|1.3e-0642.70PREDICTED: ring canal kelch homolog isoform X1 [Cucumis melo][more]
gi|659081738|ref|XP_008441488.1|1.3e-0642.70PREDICTED: uncharacterized protein LOC103485594 isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G030130.1CmoCh04G030130.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G030130MELO3C008322.2Melon (DHL92) v3.6.1cmomedB759
CmoCh04G030130Cla97C11G212860Watermelon (97103) v2cmowmbB697
CmoCh04G030130Bhi04G001865Wax gourdcmowgoB0857
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G030130Cucurbita maxima (Rimu)cmacmoB308
CmoCh04G030130Cucurbita maxima (Rimu)cmacmoB659
CmoCh04G030130Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G030130Cucurbita maxima (Rimu)cmacmoB734
CmoCh04G030130Cucurbita maxima (Rimu)cmacmoB736
CmoCh04G030130Wild cucumber (PI 183967)cmocpiB719
CmoCh04G030130Wild cucumber (PI 183967)cmocpiB768
CmoCh04G030130Cucumber (Chinese Long) v2cmocuB709
CmoCh04G030130Cucumber (Chinese Long) v2cmocuB759
CmoCh04G030130Melon (DHL92) v3.5.1cmomeB662
CmoCh04G030130Melon (DHL92) v3.5.1cmomeB671
CmoCh04G030130Melon (DHL92) v3.5.1cmomeB701
CmoCh04G030130Watermelon (Charleston Gray)cmowcgB621
CmoCh04G030130Watermelon (Charleston Gray)cmowcgB650
CmoCh04G030130Watermelon (97103) v1cmowmB714
CmoCh04G030130Watermelon (97103) v1cmowmB731
CmoCh04G030130Cucurbita pepo (Zucchini)cmocpeB654
CmoCh04G030130Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G030130Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G030130Cucurbita pepo (Zucchini)cmocpeB679
CmoCh04G030130Bottle gourd (USVL1VR-Ls)cmolsiB629
CmoCh04G030130Bottle gourd (USVL1VR-Ls)cmolsiB645
CmoCh04G030130Cucumber (Gy14) v2cgybcmoB525
CmoCh04G030130Cucumber (Gy14) v2cgybcmoB816
CmoCh04G030130Melon (DHL92) v3.6.1cmomedB795
CmoCh04G030130Silver-seed gourdcarcmoB0033
CmoCh04G030130Silver-seed gourdcarcmoB0370
CmoCh04G030130Silver-seed gourdcarcmoB0754
CmoCh04G030130Silver-seed gourdcarcmoB0925
CmoCh04G030130Cucumber (Chinese Long) v3cmocucB0838
CmoCh04G030130Cucumber (Chinese Long) v3cmocucB0899
CmoCh04G030130Watermelon (97103) v2cmowmbB723
CmoCh04G030130Wax gourdcmowgoB0879
CmoCh04G030130Cucurbita moschata (Rifu)cmocmoB261
CmoCh04G030130Cucurbita moschata (Rifu)cmocmoB449
CmoCh04G030130Cucurbita moschata (Rifu)cmocmoB466
CmoCh04G030130Cucumber (Gy14) v1cgycmoB0350
CmoCh04G030130Cucumber (Gy14) v1cgycmoB0371