CmoCh04G029820 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G029820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal protein L10
Location	Cmo_Chr04 : 21049257 .. 21051606 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCTTTTTACGGGGCATGCTTCTGGGCTTTTCCGAAATGGCGGTTTGCTCCTTCGTCCTCTGCTCATATATATACACAGTATGAATTAGGGTTTTTGGGACACAGAGAAGTCGGCGAGGTCAAGTTTGAGCAGAGAGAGTCCAAGGAACGTACTCTCGCGATGGGTAGAAGTACGATTTTTTTTTTCCATTTCTTCATCTAATATCTTCTTCCATCTTCCTCTTCAATGATTAATTTATTTGTCCCTCGTAATTTCTGGTTTATATTCGACGCAAAATCGAACTGTCGGAAATGGGTGGACCTTCGTCTGTTCCTCTTTGAAGATGTTGTGCTTTAGCCTTTCTATGATTATTTAAAAAAAAATATAAATCAGTGGTCTTGATGCAGTTAATTTGTTCTATATTTGCAATATTAAAGAATTTTATGATGTTGCAAGCAGTAGGGCCAACTAATATTGATTTTACATTCGGTTCTTAAGATGTAATCTGTTCATCTCACAATAAAATTATTATCATAGTGTAGAGTTGGCATCTATGTAAGGCAGGCTCTTAAGTACGTAAACCCTGCACTGGAATGGGGTTTTTCCTTACCCTTGGAGGAATATTGTTTCTACTTTTGATAATCGCTCTTTAGTTGCAAATGTGTATTATTTAATAGGTGCTTTTGCTCGCTGGAAAATGTTTGTTGTTGATTGTTAGAATATGGAAGTTCTGAAAATTGATGTGTGCGTAGCAAGGCTCATCATGTTCTTTTGAGTTGATGCTCTCTCTCAACTTGTATGCGGGCATCATTATTTTTCCGGACAAGTCACAGCCCTGAATAATTTTTTCTGTTGGCTCATTCTTATTATAATTTGATCATCACAATTCTTTCTGGCTCTATTGTGCGTAAAAGGTTGCTGCCTGATATTCATTAATTTTCATTTTTTTGTAGGACCTGCAAGGTGTTACCGGCAAATTAAAAACAAGCCTTATCCAAAATCCAGGTTCTGTCGTGGTGTCCCTGACCCTAAGATCAGGATCTATGATGTTGGAATGAAAAAGAAGGGTGTGGATGAATTTCCATTCTGTGTTCATCTAGTGAGTTGGGAGAAAGAAAATGTGTCTAGCGAGGCGTTGGAAGCTGCTAGGATTGCCTGCAATAAGTACATGTCTAAGTTTGCCGGGAAGGATGCATTCCACTTGAGGGTCAGGGTGCACCCCTTCCATGTTCTGCGGATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAGACTGGTATGAGAGGTGCTTTTGGCAAACCACTAGGAACTTGTGCAAGAGTGGCCATTGGGCAGGTTCTTCTTTCAGTTCGCTGCAAGGATAACAACAGCCAGCATGCACAGGAGGCCCTACGCCGTGCTAAGTTCAAATTCCCTGGTCGTCAGAAGATCATTGTCAGTAGGAAGTGGTATGAATTTTTGCATTCCCTCTCTCTCTCTCTCTCTCTCCGTAGCCAAACGAGATGTGTTTTTGTTGCTTGTGGAGCAATTTGTGAAAGTTTCCTTGACTGATTTACAAAATCTTCAAATTTCCAGGGGATTCACAAAGTTCAGTCGGGCCGAATATCTGGCTTATAAGGCAGAGAACAAAATTGTGCCGGATGGTGTCAATGCCAAGGTTAGCTATATTGCATTCATCCCATACGCTTGCTATCCTGTTGTTTGGACGTTGGGTTAGCTCTGTCTATGAGTATGCTACTTCTTTTGTGAAAATTATAATTGCATGGAATTGATGACTTTTTACATTAAAAAGCATATGATCAGCTAAGATATTAACTGGGTCGTAGAATCATGTTTGGTCTTGTGATATTTTATTTGGTCCTTCATCCCGATGAAACGCCATAATATGGTCAATATGTTTATTTTTGAGTTGTTAACTGATGGAGTTGCAACTGGGCTTTGCTTGCAGCTTCTTGGATGCCATGGACCCTTAGCAAACCGTCAACCTGGAAGAGCTTTTCTACCTCAAGCTGTCTAAGCGCAGCTACTTGTTTTGTTTTTAGGTGTTTTTGTTTTCTTTTTTGACGCTTGGAACAAATCTATATTATCATGTTGTGTGTCTGTATTAACTCACTAGTCTGGCTGTTATATTGCTTAAAAATGTTGGAGATACCAAGGAAAGCCAAAACAACCTTTTCTTTTCCCTCTATTTCTCGTTCTGCTGAACTTTCATAGAAATTATTTTTACCATTCCAATCTTGATGAATCGAAAGTAAGAAAAATGGTTCCAACGAGTTTATTTCATTACTAGGATGAATGTTTCAGGGAAGTGTTGTGTATTTTCAACATCATCATACTAGTTCCACTTTCATTTTATGCAAAA

mRNA sequence

GGGCTTTTTACGGGGCATGCTTCTGGGCTTTTCCGAAATGGCGGTTTGCTCCTTCGTCCTCTGCTCATATATATACACAGTATGAATTAGGGTTTTTGGGACACAGAGAAGTCGGCGAGGTCAAGTTTGAGCAGAGAGAGTCCAAGGAACGTACTCTCGCGATGGGTAGAAGACCTGCAAGGTGTTACCGGCAAATTAAAAACAAGCCTTATCCAAAATCCAGGTTCTGTCGTGGTGTCCCTGACCCTAAGATCAGGATCTATGATGTTGGAATGAAAAAGAAGGGTGTGGATGAATTTCCATTCTGTGTTCATCTAGTGAGTTGGGAGAAAGAAAATGTGTCTAGCGAGGCGTTGGAAGCTGCTAGGATTGCCTGCAATAAGTACATGTCTAAGTTTGCCGGGAAGGATGCATTCCACTTGAGGGTCAGGGTGCACCCCTTCCATGTTCTGCGGATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAGACTGGTATGAGAGGTGCTTTTGGCAAACCACTAGGAACTTGTGCAAGAGTGGCCATTGGGCAGGTTCTTCTTTCAGTTCGCTGCAAGGATAACAACAGCCAGCATGCACAGGAGGCCCTACGCCGTGCTAAGTTCAAATTCCCTGGTCGTCAGAAGATCATTGTCAGTAGGAAGTGGGGATTCACAAAGTTCAGTCGGGCCGAATATCTGGCTTATAAGGCAGAGAACAAAATTGTGCCGGATGGTGTCAATGCCAAGGTTAGCTATATTGCATTCATCCCATACGCTTGCTATCCTGTTGTTTGGACGTTGGCTTCTTGGATGCCATGGACCCTTAGCAAACCGTCAACCTGGAAGAGCTTTTCTACCTCAAGCTGTCTAAGCGCAGCTACTTGTTTTGTTTTTAGGTGTTTTTGTTTTCTTTTTTGACGCTTGGAACAAATCTATATTATCATGTTGTGTGTCTGTATTAACTCACTAGTCTGGCTGTTATATTGCTTAAAAATGTTGGAGATACCAAGGAAAGCCAAAACAACCTTTTCTTTTCCCTCTATTTCTCGTTCTGCTGAACTTTCATAGAAATTATTTTTACCATTCCAATCTTGATGAATCGAAAGTAAGAAAAATGGTTCCAACGAGTTTATTTCATTACTAGGATGAATGTTTCAGGGAAGTGTTGTGTATTTTCAACATCATCATACTAGTTCCACTTTCATTTTATGCAAAA

Coding sequence (CDS)

ATGGGTAGAAGACCTGCAAGGTGTTACCGGCAAATTAAAAACAAGCCTTATCCAAAATCCAGGTTCTGTCGTGGTGTCCCTGACCCTAAGATCAGGATCTATGATGTTGGAATGAAAAAGAAGGGTGTGGATGAATTTCCATTCTGTGTTCATCTAGTGAGTTGGGAGAAAGAAAATGTGTCTAGCGAGGCGTTGGAAGCTGCTAGGATTGCCTGCAATAAGTACATGTCTAAGTTTGCCGGGAAGGATGCATTCCACTTGAGGGTCAGGGTGCACCCCTTCCATGTTCTGCGGATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAGACTGGTATGAGAGGTGCTTTTGGCAAACCACTAGGAACTTGTGCAAGAGTGGCCATTGGGCAGGTTCTTCTTTCAGTTCGCTGCAAGGATAACAACAGCCAGCATGCACAGGAGGCCCTACGCCGTGCTAAGTTCAAATTCCCTGGTCGTCAGAAGATCATTGTCAGTAGGAAGTGGGGATTCACAAAGTTCAGTCGGGCCGAATATCTGGCTTATAAGGCAGAGAACAAAATTGTGCCGGATGGTGTCAATGCCAAGGTTAGCTATATTGCATTCATCCCATACGCTTGCTATCCTGTTGTTTGGACGTTGGCTTCTTGGATGCCATGGACCCTTAGCAAACCGTCAACCTGGAAGAGCTTTTCTACCTCAAGCTGTCTAAGCGCAGCTACTTGTTTTGTTTTTAGGTGTTTTTGTTTTCTTTTTTGA

Homology

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BLAST of CmoCh04G029820 vs. Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 7.8e-108
Identity = 186/199 (93.47%), Postives = 192/199 (96.48%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP G CARVAIGQVLLSVRCKD NS HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR +
Sbjct: 121 KPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTD 180

Query: 181 YLAYKAENKIVPDGVNAKV 200
           YL YK+EN+IVPDGVNAK+
Sbjct: 181 YLKYKSENRIVPDGVNAKL 199

[Close]

BLAST of CmoCh04G029820 vs. Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.5e-106
Identity = 184/199 (92.46%), Postives = 192/199 (96.48%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP G CARVAIGQVLLSVRCKDNNS +AQEALRRAKFKFPGRQKIIVSRKWGFTK +RA+
Sbjct: 121 KPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRAD 180

Query: 181 YLAYKAENKIVPDGVNAKV 200
           Y   K+EN+I+PDGVNAK+
Sbjct: 181 YPRLKSENRILPDGVNAKL 199

[Close]

BLAST of CmoCh04G029820 vs. Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 4.3e-106
Identity = 180/199 (90.45%), Postives = 193/199 (96.98%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+K+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARV+IGQVLLSVRCKD NS HAQEALRRAKFKFP RQKIIVSRKWGFTKF+R +
Sbjct: 121 KPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTD 180

Query: 181 YLAYKAENKIVPDGVNAKV 200
           Y+ +K++N+I+PDGVNAK+
Sbjct: 181 YIKWKSQNRILPDGVNAKL 199

[Close]

BLAST of CmoCh04G029820 vs. Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.5e-103
Identity = 180/198 (90.91%), Postives = 187/198 (94.44%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           K LGTCARVAIGQVLLSVRCKDN+  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAE
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAE 180

Query: 181 YLAYKAENKIVPDGVNAK 199
           Y   +A  +IVPDGVNAK
Sbjct: 181 YTKLRAMKRIVPDGVNAK 198

[Close]

BLAST of CmoCh04G029820 vs. Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 3.4e-103
Identity = 178/199 (89.45%), Postives = 188/199 (94.47%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKP PKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWE+ENV
Sbjct: 1   MGRRPARCYRQIKNKPCPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWERENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARI CNKYM+K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIVCNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARV IGQVLLSVRCKDNN+ HA EALRRAKFKFP RQKII SRKWGFTKFSRA+
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPARQKIIESRKWGFTKFSRAD 180

Query: 181 YLAYKAENKIVPDGVNAKV 200
           YL YK+E +IVPDGVNAK+
Sbjct: 181 YLKYKSEGRIVPDGVNAKL 199

[Close]

BLAST of CmoCh04G029820 vs. TrEMBL
Match: A0A059A9A7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00099 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 1.3e-114
Identity = 204/239 (85.36%), Postives = 213/239 (89.12%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 71  MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 130

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 131 SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 190

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARVAIGQVLLSVRCKD+NS HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 191 KPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 250

Query: 181 YLAYKAENKIVPDGVNAKVSYIAFIPYACYPVVWTLASWMPWTLSKPSTWKSFSTSSCL 240
           YL +K+ENKIVPDGVNAKV+                  WMPWT  +PSTWKSF   +CL
Sbjct: 251 YLKWKSENKIVPDGVNAKVT-----------------PWMPWTSGEPSTWKSFLAYNCL 292

[Close]

BLAST of CmoCh04G029820 vs. TrEMBL
Match: A0A0A0LN38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336100 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 2.4e-108
Identity = 190/199 (95.48%), Postives = 197/199 (98.99%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARVAIGQVLLSVRCKD+NSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 121 KPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLAYKAENKIVPDGVNAKV 200
           YL +K+ENKI+PDGVNAK+
Sbjct: 181 YLKFKSENKIMPDGVNAKL 199

[Close]

BLAST of CmoCh04G029820 vs. TrEMBL
Match: A0A0S3RED0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G176500 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 3.2e-108
Identity = 189/199 (94.97%), Postives = 197/199 (98.99%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KPLGTCARVAIGQVLLSVRCKD+NS HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+R++
Sbjct: 121 KPLGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRSD 180

Query: 181 YLAYKAENKIVPDGVNAKV 200
           YL YK+EN+IVPDGVNAK+
Sbjct: 181 YLKYKSENRIVPDGVNAKL 199

[Close]

BLAST of CmoCh04G029820 vs. TrEMBL
Match: A0A0L9UDN3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g121300 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 3.2e-108
Identity = 189/199 (94.97%), Postives = 197/199 (98.99%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KPLGTCARVAIGQVLLSVRCKD+NS HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+R++
Sbjct: 121 KPLGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRSD 180

Query: 181 YLAYKAENKIVPDGVNAKV 200
           YL YK+EN+IVPDGVNAK+
Sbjct: 181 YLKYKSENRIVPDGVNAKL 199

[Close]

BLAST of CmoCh04G029820 vs. TrEMBL
Match: I1MB53_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G187800 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 9.3e-108
Identity = 189/199 (94.97%), Postives = 196/199 (98.49%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARVAIGQVLLSVRCKD+NS HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR++
Sbjct: 121 KPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSD 180

Query: 181 YLAYKAENKIVPDGVNAKV 200
           YL +K+EN+IVPDGVNAKV
Sbjct: 181 YLKFKSENRIVPDGVNAKV 199

[Close]

BLAST of CmoCh04G029820 vs. TAIR10
Match: AT1G66580.1 (AT1G66580.1 senescence associated gene 24)

HSP 1 Score: 377.1 bits (967), Expect = 8.6e-105
Identity = 180/198 (90.91%), Postives = 187/198 (94.44%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           K LGTCARVAIGQVLLSVRCKDN+  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAE
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAE 180

Query: 181 YLAYKAENKIVPDGVNAK 199
           Y   +A  +IVPDGVNAK
Sbjct: 181 YTKLRAMKRIVPDGVNAK 198

[Close]

BLAST of CmoCh04G029820 vs. TAIR10
Match: AT1G26910.1 (AT1G26910.1 Ribosomal protein L16p/L10e family protein)

HSP 1 Score: 373.2 bits (957), Expect = 1.2e-103
Identity = 177/198 (89.39%), Postives = 186/198 (93.94%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           K LGTCARVAIGQVLLSVRCKD +  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 181 YLAYKAENKIVPDGVNAK 199
           Y   + E +IVPDGVNAK
Sbjct: 181 YTKLRQEKRIVPDGVNAK 198

[Close]

BLAST of CmoCh04G029820 vs. TAIR10
Match: AT1G14320.1 (AT1G14320.1 Ribosomal protein L16p/L10e family protein)

HSP 1 Score: 372.5 bits (955), Expect = 2.1e-103
Identity = 176/198 (88.89%), Postives = 186/198 (93.94%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           K LGTCARVAIGQVLLSVRCKD +  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 181 YLAYKAENKIVPDGVNAK 199
           +   + E ++VPDGVNAK
Sbjct: 181 FTKLRQEKRVVPDGVNAK 198

[Close]

BLAST of CmoCh04G029820 vs. NCBI nr
Match: gi|629083962|gb|KCW50319.1| (hypothetical protein EUGRSUZ_J00099 [Eucalyptus grandis])

HSP 1 Score: 420.6 bits (1080), Expect = 1.9e-114
Identity = 204/239 (85.36%), Postives = 213/239 (89.12%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 71  MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 130

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 131 SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 190

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARVAIGQVLLSVRCKD+NS HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 191 KPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 250

Query: 181 YLAYKAENKIVPDGVNAKVSYIAFIPYACYPVVWTLASWMPWTLSKPSTWKSFSTSSCL 240
           YL +K+ENKIVPDGVNAKV+                  WMPWT  +PSTWKSF   +CL
Sbjct: 251 YLKWKSENKIVPDGVNAKVT-----------------PWMPWTSGEPSTWKSFLAYNCL 292

[Close]

BLAST of CmoCh04G029820 vs. NCBI nr
Match: gi|449447509|ref|XP_004141510.1| (PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 1.4e-109
Identity = 193/199 (96.98%), Postives = 198/199 (99.50%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARVAIGQVLLSVRCKD+NSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 121 KPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLAYKAENKIVPDGVNAKV 200
           YLAYKAENKI+PDGVNAK+
Sbjct: 181 YLAYKAENKILPDGVNAKL 199

[Close]

BLAST of CmoCh04G029820 vs. NCBI nr
Match: gi|659119109|ref|XP_008459481.1| (PREDICTED: 60S ribosomal protein L10-like [Cucumis melo])

HSP 1 Score: 404.4 bits (1038), Expect = 1.4e-109
Identity = 193/199 (96.98%), Postives = 198/199 (99.50%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 26  MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 85

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 86  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 145

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARVAIGQVLLSVRCKD+NSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 146 KPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 205

Query: 181 YLAYKAENKIVPDGVNAKV 200
           YLAYKAENKI+PDGVNAK+
Sbjct: 206 YLAYKAENKILPDGVNAKL 224

[Close]

BLAST of CmoCh04G029820 vs. NCBI nr
Match: gi|449459224|ref|XP_004147346.1| (PREDICTED: 60S ribosomal protein L10 [Cucumis sativus])

HSP 1 Score: 399.8 bits (1026), Expect = 3.5e-108
Identity = 190/199 (95.48%), Postives = 197/199 (98.99%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARVAIGQVLLSVRCKD+NSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 121 KPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLAYKAENKIVPDGVNAKV 200
           YL +K+ENKI+PDGVNAK+
Sbjct: 181 YLKFKSENKIMPDGVNAKL 199

[Close]

BLAST of CmoCh04G029820 vs. NCBI nr
Match: gi|659121889|ref|XP_008460864.1| (PREDICTED: 60S ribosomal protein L10 [Cucumis melo])

HSP 1 Score: 399.8 bits (1026), Expect = 3.5e-108
Identity = 190/199 (95.48%), Postives = 197/199 (98.99%), Query Frame = 1


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM+KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPLGTCARVAIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180
           KP GTCARVAIGQVLLSVRCKD+NSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 121 KPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLAYKAENKIVPDGVNAKV 200
           YL +K+ENKI+PDGVNAK+
Sbjct: 181 YLKFKSENKIMPDGVNAKL 199

The following BLAST results are available for this feature:

BLAST of CmoCh04G029820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL10_SOLME	7.8e-108	93.47	60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1	[more]
RL10_EUPES	2.5e-106	92.46	60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1	[more]
RL10_VITRI	4.3e-106	90.45	60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1	[more]
RL103_ARATH	1.5e-103	90.91	60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1	[more]
RL10_MAIZE	3.4e-103	89.45	60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1	[more]

BLAST of CmoCh04G029820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059A9A7_EUCGR	1.3e-114	85.36	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00099 PE=4 SV=1	[more]
A0A0A0LN38_CUCSA	2.4e-108	95.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336100 PE=4 SV=1	[more]
A0A0S3RED0_PHAAN	3.2e-108	94.97	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G176500 PE=...	[more]
A0A0L9UDN3_PHAAN	3.2e-108	94.97	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g121300 PE=4 SV=1	[more]
I1MB53_SOYBN	9.3e-108	94.97	Uncharacterized protein OS=Glycine max GN=GLYMA_14G187800 PE=4 SV=1	[more]

BLAST of CmoCh04G029820 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66580.1	8.6e-105	90.91	senescence associated gene 24	[more]
AT1G26910.1	1.2e-103	89.39	Ribosomal protein L16p/L10e family protein	[more]
AT1G14320.1	2.1e-103	88.89	Ribosomal protein L16p/L10e family protein	[more]

BLAST of CmoCh04G029820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|629083962\|gb\|KCW50319.1\|	1.9e-114	85.36	hypothetical protein EUGRSUZ_J00099 [Eucalyptus grandis]	[more]
gi\|449447509\|ref\|XP_004141510.1\|	1.4e-109	96.98	PREDICTED: 60S ribosomal protein L10-like [Cucumis sativus]	[more]
gi\|659119109\|ref\|XP_008459481.1\|	1.4e-109	96.98	PREDICTED: 60S ribosomal protein L10-like [Cucumis melo]	[more]
gi\|449459224\|ref\|XP_004147346.1\|	3.5e-108	95.48	PREDICTED: 60S ribosomal protein L10 [Cucumis sativus]	[more]
gi\|659121889\|ref\|XP_008460864.1\|	3.5e-108	95.48	PREDICTED: 60S ribosomal protein L10 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001197	Ribosomal_L10e
IPR016180	Ribosomal_L10e/L16
IPR018255	Ribosomal_L10e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G029820.1	CmoCh04G029820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001197	Ribosomal protein L10e	TIGRFAMs	TIGR00279	TIGR00279	coord: 1..174 score: 3.3
IPR016180	Ribosomal protein L10e/L16	GENE3D	G3DSA:3.90.1170.10		coord: 4..173 score: 4.4
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 12..166 score: 6.8
IPR016180	Ribosomal protein L10e/L16	unknown	SSF54686	Ribosomal protein L16p/L10e	coord: 4..173 score: 4.06
IPR018255	Ribosomal protein L10e, conserved site	PROSITE	PS01257	RIBOSOMAL_L10E	coord: 108..129 scor
None	No IPR available	PANTHER	PTHR11726	60S RIBOSOMAL PROTEIN L10	coord: 2..199 score: 8.7E
None	No IPR available	PANTHER	PTHR11726:SF15	SUBFAMILY NOT NAMED	coord: 2..199 score: 8.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G029820	CmaCh04G028540	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G029820	MELO3C022104.2	Melon (DHL92) v3.6.1	cmomedB705
CmoCh04G029820	CsaV3_5G039260	Cucumber (Chinese Long) v3	cmocucB0885
CmoCh04G029820	Cla97C11G212440	Watermelon (97103) v2	cmowmbB711
CmoCh04G029820	Bhi06G000099	Wax gourd	cmowgoB0840
CmoCh04G029820	CsGy5G029540	Cucumber (Gy14) v2	cgybcmoB664
CmoCh04G029820	Carg05928	Silver-seed gourd	carcmoB0033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G029820	Wax gourd	cmowgoB0834
CmoCh04G029820	Wax gourd	cmowgoB0879
CmoCh04G029820	Cucurbita moschata (Rifu)	cmocmoB256
CmoCh04G029820	Cucurbita moschata (Rifu)	cmocmoB261
CmoCh04G029820	Cucurbita moschata (Rifu)	cmocmoB449
CmoCh04G029820	Cucumber (Gy14) v1	cgycmoB0350
CmoCh04G029820	Cucumber (Gy14) v1	cgycmoB0662
CmoCh04G029820	Cucumber (Gy14) v1	cgycmoB0663
CmoCh04G029820	Cucurbita maxima (Rimu)	cmacmoB303
CmoCh04G029820	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G029820	Cucurbita maxima (Rimu)	cmacmoB659
CmoCh04G029820	Wild cucumber (PI 183967)	cmocpiB757
CmoCh04G029820	Wild cucumber (PI 183967)	cmocpiB719
CmoCh04G029820	Wild cucumber (PI 183967)	cmocpiB722
CmoCh04G029820	Cucumber (Chinese Long) v2	cmocuB709
CmoCh04G029820	Cucumber (Chinese Long) v2	cmocuB714
CmoCh04G029820	Cucumber (Chinese Long) v2	cmocuB747
CmoCh04G029820	Melon (DHL92) v3.5.1	cmomeB615
CmoCh04G029820	Melon (DHL92) v3.5.1	cmomeB618
CmoCh04G029820	Melon (DHL92) v3.5.1	cmomeB701
CmoCh04G029820	Watermelon (Charleston Gray)	cmowcgB621
CmoCh04G029820	Watermelon (Charleston Gray)	cmowcgB635
CmoCh04G029820	Watermelon (Charleston Gray)	cmowcgB650
CmoCh04G029820	Watermelon (97103) v1	cmowmB714
CmoCh04G029820	Watermelon (97103) v1	cmowmB729
CmoCh04G029820	Watermelon (97103) v1	cmowmB730
CmoCh04G029820	Cucurbita pepo (Zucchini)	cmocpeB654
CmoCh04G029820	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G029820	Cucurbita pepo (Zucchini)	cmocpeB666
CmoCh04G029820	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G029820	Bottle gourd (USVL1VR-Ls)	cmolsiB629
CmoCh04G029820	Bottle gourd (USVL1VR-Ls)	cmolsiB645
CmoCh04G029820	Bottle gourd (USVL1VR-Ls)	cmolsiB657
CmoCh04G029820	Cucumber (Gy14) v2	cgybcmoB525
CmoCh04G029820	Cucumber (Gy14) v2	cgybcmoB625
CmoCh04G029820	Silver-seed gourd	carcmoB0365
CmoCh04G029820	Silver-seed gourd	carcmoB0370
CmoCh04G029820	Silver-seed gourd	carcmoB0863
CmoCh04G029820	Cucumber (Chinese Long) v3	cmocucB0838
CmoCh04G029820	Cucumber (Chinese Long) v3	cmocucB0846
CmoCh04G029820	Watermelon (97103) v2	cmowmbB697
CmoCh04G029820	Watermelon (97103) v2	cmowmbB723