CmoCh04G028140 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G028140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 20182215 .. 20185689 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATGAACCGGATGATTCGGCTTGATCGGTTCGGGTCTCGATTGATTCTGCACCACGTACATCAAAGATATTTCTTATGCAAACATGGAAATTGCCCGCCAGAATCTTCGCATTTTCCTTTCTCCGTATTTTACACCGGCAAAATTCTCTCCCAGTTCAAGATTTCGATCGTCTGGTTTTGAGCCGACGATGAAGCCTCAATTCCCGATTATCATTTCTAGTAGTTTTGGAAGTAATGAATTCTAATGCTATCGCCATCGTGTGCGGGAAATCTTCACTGATGCTCCGATATATGGTGCTTGAAAATGACCGAAATGGAAATGAGAAATTCAAATCATTTGGAAATTCGATTCATGTTTCGCGTTCGCTGTTTCCTGGTAGTAGTTGGTGGAACTTAGATGAGCGTATGAAAGTAGAAGTTGAAGCTGCGAAGCCGCTTATACTTTATTTAGCTCTTCATCAGGTATGGAAATTGGTTTGGGATATTAATCAATGGCTTCTCCTCGTTCCTTCTGTAGCTTCAACACTGCTGAGGCGCAGTTAGTAAGCTGTTCTGTATTATCACTGTGCTGATATTTAGTTTTAGCGTTCTCTGTACATCTGAAATTGATTGATCTTTGCATGCTGACCACCGCACTAATTAGAAAAATCTTTCAAGAAAGATTCCATTCCAGCTTCTTCTTCTTGTTCTTCCTTCTTTTGATGATAACAAGAAACTTTTCATCAGGTAAATTGAAAAGAATTACATCATAGCCAGCCCAAAAAAAGCCTCTCCAATTGGTTGGTCCCAGGCTTGGAAGTTTTCTGAATGGGAAGATTGTTACTCGATTGAACAATGTGGGGTTGAAAGTAGATCCGGGATGATTGAGGTTAGTTCATGAACCAGTTGCTTATTGAAAAGTGGGATTTGATTTAGTGGGTTATGAGGAATCCTTGTATGTCTTTTGAGGTTAAATTGTTACGTGATCACGATGGTTATATATATTACTTAATCGTTGATAGCCATGATTAGCACCTTTAGCAGATGTGTTCAATTTTCCTTAGAAGCCGATACCTTAATTTGTCAAGTCTTCCTATGAACAGTGTGTACAACAATGTTCGTATGAGATCCCACATCGATTGGAAAGGAAAACGAAGTATTTTTTATAAGGGTGTGGAAACCTTCTCCTAGCAGACTCCTAGCAGACGCATTTTAAAACCTTGAGGGAAAGTCCAAAAGGGAAAAGCCCAAAGAGGACAATATCTGCTAACGGTGAGTTCGGGCGGTTACAAATGGTATCAGAGCTAGACACTGAGCAATGTGCCAGTGAGGAGGATGAGCCTCAGGGGTGGACACAAGGCGGTGTGCCAGTAAGGACGCTGGGCCTCGAAGGGGGTGGATTGGGGGGTCCCACATCGATTAGAGAAGGGAATGAGTGCCAACTAGGACACTGGATTCCGAAGGAGGGTGGATTGTGAGATCTCACATCGGTTGGAGAGGAGAACGAAACATTTTTTATATGGGTGTAGAAACCTTCCTCTAGCAGACGCGTTTTAAAAACCTTGAGGGAAAGCCCAAAGAAAACAATATCTACTAGCAGATGGTTTGGGCCGTTACCGTTTGAATAGTTCGAATTGTCAAAGTATATATAGTATTGTGTTTACTTGAATCTCTGTTGAACTTCTGGATTGATATCAGCTTACATTTGCTGCTTTTGCAGTTCAGTTGTCTGGTAAATTGCTTTGTTAATTTGTCTTTATTCAAATTCTTTGCTCACATTTTGTCTGTGCAGCGTAGTTGGCATTGGTTTCCATTTAAAAAGGAGAATAGTAGAACCCGTAATTCTCTCAAATACAGATTTGTACTGACAACTTGTCCATTAAGAAACAATAGCGTCATCAAACAAGTTCAAATTTGTTCATAAAATGGTCATATCCAAGTCTTTCTCTTGAATTGCAATAAGAATCATCGTCTTATGCCCTTACTCAGGCCTACTGCTCAATGCCTCTCTATGATCAACTTCATAAGAATCAATCGTCAAATGGTCATGTCCATGCTTCTTATGTTCTTTCCAAGCGATTGAACTGTTTCTTTGTTTTCATTATTATTTTAAATTTAGCTTAGATTTTGAAAATGTTATTTTTAGAGTAACAAAACTAAGAATTTCATAGATGGGAGTAGTGTTTACAAGCTTAGTTTTCAAAAAGATCGAACACAAAAAACAAAATAGGTATCGAACATGGTGATTTTTGTGTCGGGAATACTCCACCAGTTTCATACTAAAACAAGTCACTGTGCTTTGAGTTTCAGGTTATAAAGCCTCAATCTTTGATCACTCTGCTGAAAATTGACATGGAGTTAATTGATATACTTCATCCTGCTGAAGAACACCTAAAATATTTCTGCTTTTTCAGATTGCATGTAAGTTAAGTTACCAAGTTTATTCCTGTTTGCTTGTGCTTTCCCCTGCCAAACCATTCATCATATGTAATGCCTTCTTTGTGGTCTCTCTCTCTGAACCTAAGACACAACGTCTTTTGGTCTTGTGCAATCAAGGCTACCTATTGAGAATTTTGGCTGGAGATAAATATCAGAATCTTTTAAGGATAGATTTAGAAATTGGGCTTAGTTAGGAGGCATCCGTTTCGTTTTCTAATTCTTTCTTGGTTTTCTCTTTCATCTCTTTTGTAACTATGGATTTTTATAATATAGCAGTTGGAATGGTAACTGTTAGCTTCTTAGTTGGTGGATATTGTTTCCAAAACCCAAAGTTACCTCTAAAGCATCATGTCTCTTAATTTGGAGAAAGACTAAATTGTAGGAAAAGTGCTCGCCTCTTTTCAACCAGGCACTCGCCTCACCTATTTTCCACACTTGAAAGGTGCAACAATGGTGAGCTTGGCGAGCACATCAATAGAGATGCTTGCTAAAGCACAGTACAATGCAAGAAACATTTGCCCCACTTTGCTGTGCTCCATAGGCAAGCACATAAAGCTGCCTTGAGTTGAGTGACACTGGTTACAAGACTGGTTTTTTTTGTGAGATCCCACATCGGGTGGAGAGGGGAACGAAGTATTTCTTATAAATGTGTGGAAATCTCTCCCTTTTGCTAGTAGTAGGTTTGGGTTATTACATTTTTACTCCACGTGTTCTGATATAGTTCACTTACCAAAATAGTCTTCTTTGGTATCTGAAGGGGTAAAGAAACATGAATCATTTTTGTCTTGATTTCAATTGGGTTTTGTTTCAGAACTCGCAATGTGGGGGAGATTGTGACAGTAGAAGGCCAGACATACACTATCTCAGCAGTAACTCTAGGGGAAGTATGAACCAAGTGAAGAGAGACTTGATGTTTTGTTCACAGGAAGGTACGTCTTCAATTTGTAAATAAACCAATGATATTTATAAACTTAATTTTTAGGAGAAAAAATTCATTTTTGGTTCTTGAGTTTGTTAGTTTCGGAAGGACCAGCCAAACCAACTCCTTACTAG

mRNA sequence

ATGATATGAACCGGATGATTCGGCTTGATCGGTTCGGGTCTCGATTGATTCTGCACCACGTACATCAAAGATATTTCTTATGCAAACATGGAAATTGCCCGCCAGAATCTTCGCATTTTCCTTTCTCCGTATTTTACACCGGCAAAATTCTCTCCCAGTTCAAGATTTCGATCGTCTGGTTTTGAGCCGACGATGAAGCCTCAATTCCCGATTATCATTTCTAGTAGTTTTGGAAGTAATGAATTCTAATGCTATCGCCATCGTGTGCGGGAAATCTTCACTGATGCTCCGATATATGGTGCTTGAAAATGACCGAAATGGAAATGAGAAATTCAAATCATTTGGAAATTCGATTCATGTTTCGCGTTCGCTGTTTCCTGGTAGTAGTTGGTGGAACTTAGATGAGCGTATGAAAGTAGAAGTTGAAGCTGCGAAGCCGCTTATACTTTATTTAGCTCTTCATCAGGTTATAAAGCCTCAATCTTTGATCACTCTGCTGAAAATTGACATGGAGTTAATTGATATACTTCATCCTGCTGAAGAACACCTAAAATATTTCTGCTTTTTCAGATTGCATAACTCGCAATGTGGGGGAGATTGTGACAGTAGAAGGCCAGACATACACTATCTCAGCAGTAACTCTAGGGGAAGTATGAACCAAGTGAAGAGAGACTTGATGTTTTGTTCACAGGAAGTTTCGGAAGGACCAGCCAAACCAACTCCTTACTAG

Coding sequence (CDS)

ATGAATTCTAATGCTATCGCCATCGTGTGCGGGAAATCTTCACTGATGCTCCGATATATGGTGCTTGAAAATGACCGAAATGGAAATGAGAAATTCAAATCATTTGGAAATTCGATTCATGTTTCGCGTTCGCTGTTTCCTGGTAGTAGTTGGTGGAACTTAGATGAGCGTATGAAAGTAGAAGTTGAAGCTGCGAAGCCGCTTATACTTTATTTAGCTCTTCATCAGGTTATAAAGCCTCAATCTTTGATCACTCTGCTGAAAATTGACATGGAGTTAATTGATATACTTCATCCTGCTGAAGAACACCTAAAATATTTCTGCTTTTTCAGATTGCATAACTCGCAATGTGGGGGAGATTGTGACAGTAGAAGGCCAGACATACACTATCTCAGCAGTAACTCTAGGGGAAGTATGAACCAAGTGAAGAGAGACTTGATGTTTTGTTCACAGGAAGTTTCGGAAGGACCAGCCAAACCAACTCCTTACTAG
Homology
[Close]
BLAST of CmoCh04G028140 vs. TrEMBL
Match: A0A0A0KR30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G523050 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.1e-12
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 13  SSLMLRYMVLENDRNGNEKFKSFGNSIHVSRSLFPG--SSWWNLDERMKVEVEAAKPLIL 72
           SSLM +YM+ E+D NG+E F+SFG+ IHVS SLFPG   SWWNLDE  +V++ AAK + +
Sbjct: 62  SSLMFQYMMPEDDGNGDENFESFGHWIHVSLSLFPGVSYSWWNLDEDKQVQIGAAKRITV 121

Query: 73  YLALHQVIK 80
           YLAL ++ K
Sbjct: 122 YLALRRMWK 130

[Close]
BLAST of CmoCh04G028140 vs. NCBI nr
Match: gi|659117825|ref|XP_008458806.1| (PREDICTED: ABC transporter B family member 26, chloroplastic-like [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 3.9e-12
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1 

Query: 13  SSLMLRYMVLENDRNGNEKFKSFGNSIHVSRSLFPG--SSWWNLDERMKVEVEAAKPLIL 72
           SSLML+Y   END NG+E FKSFG+ +HV  SLFPG  SSWWNL E  +V + AAKP+ +
Sbjct: 58  SSLMLQYTAPENDGNGDENFKSFGHWVHVPLSLFPGVSSSWWNLTEDKQVLIGAAKPITV 117

Query: 73  YLALHQVIK 80
           YLAL ++ K
Sbjct: 118 YLALRRMWK 126

[Close]
BLAST of CmoCh04G028140 vs. NCBI nr
Match: gi|449450191|ref|XP_004142847.1| (PREDICTED: ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 8.8e-12
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 13  SSLMLRYMVLENDRNGNEKFKSFGNSIHVSRSLFPG--SSWWNLDERMKVEVEAAKPLIL 72
           SSLM +YM+ E+D NG+E F+SFG+ IHVS SLFPG   SWWNLDE  +V++ AAK + +
Sbjct: 62  SSLMFQYMMPEDDGNGDENFESFGHWIHVSLSLFPGVSYSWWNLDEDKQVQIGAAKRITV 121

Query: 73  YLALHQVIK 80
           YLAL ++ K
Sbjct: 122 YLALRRMWK 130

[Close]
BLAST of CmoCh04G028140 vs. NCBI nr
Match: gi|778703624|ref|XP_011655397.1| (PREDICTED: ABC transporter B family member 26, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 8.8e-12
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 13  SSLMLRYMVLENDRNGNEKFKSFGNSIHVSRSLFPG--SSWWNLDERMKVEVEAAKPLIL 72
           SSLM +YM+ E+D NG+E F+SFG+ IHVS SLFPG   SWWNLDE  +V++ AAK + +
Sbjct: 62  SSLMFQYMMPEDDGNGDENFESFGHWIHVSLSLFPGVSYSWWNLDEDKQVQIGAAKRITV 121

Query: 73  YLALHQVIK 80
           YLAL ++ K
Sbjct: 122 YLALRRMWK 130

The following BLAST results are available for this feature:
BLAST of CmoCh04G028140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G028140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR30_CUCSA6.1e-1257.97Uncharacterized protein OS=Cucumis sativus GN=Csa_5G523050 PE=4 SV=1[more]
BLAST of CmoCh04G028140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G028140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659117825|ref|XP_008458806.1|3.9e-1259.42PREDICTED: ABC transporter B family member 26, chloroplastic-like [Cucumis melo][more]
gi|449450191|ref|XP_004142847.1|8.8e-1257.97PREDICTED: ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis... [more]
gi|778703624|ref|XP_011655397.1|8.8e-1257.97PREDICTED: ABC transporter B family member 26, chloroplastic isoform X2 [Cucumis... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016887 ATPase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G028140.1CmoCh04G028140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G028140CmaCh04G026840Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G028140Lsi02G015920Bottle gourd (USVL1VR-Ls)cmolsiB640
CmoCh04G028140MELO3C021582.2Melon (DHL92) v3.6.1cmomedB713
CmoCh04G028140CsaV3_5G027120Cucumber (Chinese Long) v3cmocucB0848
CmoCh04G028140Cla97C09G180740Watermelon (97103) v2cmowmbB772
CmoCh04G028140Bhi06G000466Wax gourdcmowgoB0836
CmoCh04G028140CsGy5G017860Cucumber (Gy14) v2cgybcmoB626
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G028140Melon (DHL92) v3.6.1cmomedB766
CmoCh04G028140Silver-seed gourdcarcmoB0370
CmoCh04G028140Silver-seed gourdcarcmoB0501
CmoCh04G028140Silver-seed gourdcarcmoB0506
CmoCh04G028140Silver-seed gourdcarcmoB0593
CmoCh04G028140Silver-seed gourdcarcmoB0940
CmoCh04G028140Cucumber (Chinese Long) v3cmocucB0801
CmoCh04G028140Cucumber (Chinese Long) v3cmocucB0824
CmoCh04G028140Watermelon (97103) v2cmowmbB685
CmoCh04G028140Wax gourdcmowgoB0812
CmoCh04G028140Cucurbita moschata (Rifu)cmocmoB073
CmoCh04G028140Cucurbita moschata (Rifu)cmocmoB122
CmoCh04G028140Cucurbita moschata (Rifu)cmocmoB123
CmoCh04G028140Cucurbita moschata (Rifu)cmocmoB220
CmoCh04G028140Cucurbita moschata (Rifu)cmocmoB261
CmoCh04G028140Cucumber (Gy14) v1cgycmoB0544
CmoCh04G028140Cucumber (Gy14) v1cgycmoB0939
CmoCh04G028140Cucurbita maxima (Rimu)cmacmoB157
CmoCh04G028140Cucurbita maxima (Rimu)cmacmoB266
CmoCh04G028140Cucurbita maxima (Rimu)cmacmoB308
CmoCh04G028140Wild cucumber (PI 183967)cmocpiB705
CmoCh04G028140Wild cucumber (PI 183967)cmocpiB724
CmoCh04G028140Cucumber (Chinese Long) v2cmocuB695
CmoCh04G028140Cucumber (Chinese Long) v2cmocuB716
CmoCh04G028140Melon (DHL92) v3.5.1cmomeB624
CmoCh04G028140Melon (DHL92) v3.5.1cmomeB677
CmoCh04G028140Watermelon (Charleston Gray)cmowcgB608
CmoCh04G028140Watermelon (Charleston Gray)cmowcgB611
CmoCh04G028140Watermelon (97103) v1cmowmB646
CmoCh04G028140Watermelon (97103) v1cmowmB650
CmoCh04G028140Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G028140Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G028140Cucurbita pepo (Zucchini)cmocpeB701
CmoCh04G028140Cucurbita pepo (Zucchini)cmocpeB704
CmoCh04G028140Bottle gourd (USVL1VR-Ls)cmolsiB647
CmoCh04G028140Bottle gourd (USVL1VR-Ls)cmolsiB688
CmoCh04G028140Cucumber (Gy14) v2cgybcmoB121
CmoCh04G028140Cucumber (Gy14) v2cgybcmoB395