CmoCh04G027920 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G027920
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 20091658 .. 20092542 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAATCCGGCAAATCCGGCGAGCCTCTGAACCTAAAACTGAATCCTCCGCCGTTGGGCACTGAAGTCCTTCAAATACTCTTCCCCTTCCCTCCTTCAAACTCATTCTCTGGTGTTGCAGTCTTTCTCTATATACCTTACAGAGGATTTCTGCGACCTTCAGAATCCTATTTAAATAAAACTTCCTCTCTTTTTCTCTTCGATTCTCCTCATCTCTTTGCCGCTTCAGCATTAATGGCCCGCCAACTGCTTCTCCTCGCTCTTCTCTTCGCCGCCGTCCTCGGCATTGCCTCTGCTGCCAAGGCCCCAGCCCCTGACGCCGACTCTGCCGCAGCCAAGACCCCGGCTGCTGCTCCATCCAACTCTTCCTCCGCTGCCGATGCACCCAAAGGGGCTGCTTCTGCCCCCAAGGCCGAAGCCGATGCTCCCGAGGCCGATGCCGGAGCTCCAAAGGCCGATGCCGGAGCCCCAAAGGCAGAAGCCGGTGCTCCCGAGGCCGATGCCGGAGCCCCAAAGGCAGAAGCCGGTGCTCCCGAGGCCGATGCCGGAGCCCCAAAGGCAGAAGCCGGTGCTCCCGAGGCCGATGCCGAAGCCCCGAAGGCAGAAGCCGGAGCCCCCGAGGCCGATGCCGGAGCCCCTAGTGCTGATGCCCCTGCCGGTAGCCCTGCATCCGGGCCGGCCAGCGATGAGTCTCCCTCCGCAGCCCCTGAATCCGATGCAGAGGCGTCATCTCCACCTTCCCCAAGCGGACCTGCGGAAGGACCAGCCAGCGAGGAGGAAGCTGCAGATGCACCGGCCCCTGATGCTTCTGGCAGTGGATCTTCGTTCCTGAAGATGTCTGCTACCACGGTTGCGACCATTGCTGGAGTCATTGTGTTCTAA

mRNA sequence

ATGGCGAAATCCGGCAAATCCGGCGAGCCTCTGAACCTAAAACTGAATCCTCCGCCGTTGGGCACTGAAGTCCTTCAAATACTCTTCCCCTTCCCTCCTTCAAACTCATTCTCTGGTGTTGCAGTCTTTCTCTATATACCTTACAGAGGATTTCTGCGACCTTCAGAATCCTATTTAAATAAAACTTCCTCTCTTTTTCTCTTCGATTCTCCTCATCTCTTTGCCGCTTCAGCATTAATGGCCCGCCAACTGCTTCTCCTCGCTCTTCTCTTCGCCGCCGTCCTCGGCATTGCCTCTGCTGCCAAGGCCCCAGCCCCTGACGCCGACTCTGCCGCAGCCAAGACCCCGGCTGCTGCTCCATCCAACTCTTCCTCCGCTGCCGATGCACCCAAAGGGGCTGCTTCTGCCCCCAAGGCCGAAGCCGATGCTCCCGAGGCCGATGCCGGAGCTCCAAAGGCCGATGCCGGAGCCCCAAAGGCAGAAGCCGGTGCTCCCGAGGCCGATGCCGGAGCCCCAAAGGCAGAAGCCGGTGCTCCCGAGGCCGATGCCGGAGCCCCAAAGGCAGAAGCCGGTGCTCCCGAGGCCGATGCCGAAGCCCCGAAGGCAGAAGCCGGAGCCCCCGAGGCCGATGCCGGAGCCCCTAGTGCTGATGCCCCTGCCGGTAGCCCTGCATCCGGGCCGGCCAGCGATGAGTCTCCCTCCGCAGCCCCTGAATCCGATGCAGAGGCGTCATCTCCACCTTCCCCAAGCGGACCTGCGGAAGGACCAGCCAGCGAGGAGGAAGCTGCAGATGCACCGGCCCCTGATGCTTCTGGCAGTGGATCTTCGTTCCTGAAGATGTCTGCTACCACGGTTGCGACCATTGCTGGAGTCATTGTGTTCTAA

Coding sequence (CDS)

ATGGCGAAATCCGGCAAATCCGGCGAGCCTCTGAACCTAAAACTGAATCCTCCGCCGTTGGGCACTGAAGTCCTTCAAATACTCTTCCCCTTCCCTCCTTCAAACTCATTCTCTGGTGTTGCAGTCTTTCTCTATATACCTTACAGAGGATTTCTGCGACCTTCAGAATCCTATTTAAATAAAACTTCCTCTCTTTTTCTCTTCGATTCTCCTCATCTCTTTGCCGCTTCAGCATTAATGGCCCGCCAACTGCTTCTCCTCGCTCTTCTCTTCGCCGCCGTCCTCGGCATTGCCTCTGCTGCCAAGGCCCCAGCCCCTGACGCCGACTCTGCCGCAGCCAAGACCCCGGCTGCTGCTCCATCCAACTCTTCCTCCGCTGCCGATGCACCCAAAGGGGCTGCTTCTGCCCCCAAGGCCGAAGCCGATGCTCCCGAGGCCGATGCCGGAGCTCCAAAGGCCGATGCCGGAGCCCCAAAGGCAGAAGCCGGTGCTCCCGAGGCCGATGCCGGAGCCCCAAAGGCAGAAGCCGGTGCTCCCGAGGCCGATGCCGGAGCCCCAAAGGCAGAAGCCGGTGCTCCCGAGGCCGATGCCGAAGCCCCGAAGGCAGAAGCCGGAGCCCCCGAGGCCGATGCCGGAGCCCCTAGTGCTGATGCCCCTGCCGGTAGCCCTGCATCCGGGCCGGCCAGCGATGAGTCTCCCTCCGCAGCCCCTGAATCCGATGCAGAGGCGTCATCTCCACCTTCCCCAAGCGGACCTGCGGAAGGACCAGCCAGCGAGGAGGAAGCTGCAGATGCACCGGCCCCTGATGCTTCTGGCAGTGGATCTTCGTTCCTGAAGATGTCTGCTACCACGGTTGCGACCATTGCTGGAGTCATTGTGTTCTAA
Homology
[Close]
BLAST of CmoCh04G027920 vs. TrEMBL
Match: E1IAV0_9CHLR (Uncharacterized protein OS=Oscillochloris trichoides DG-6 GN=OSCT_0451 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-07
Identity = 62/105 (59.05%), Postives = 73/105 (69.52%), Query Frame = 1 

Query: 100 AAKAPAPDADSAAAKTPAAAPSNSSSAADAPKGAASAPKAEADAPEADAGAPKADAGAPK 159
           AA APAP+A +A A+ PAA     + AA+A   AA AP AEA+AP A+A AP A+A AP 
Sbjct: 103 AAAAPAPEAPAAEAEAPAA----EAPAAEAEAPAAEAPAAEAEAPAAEAEAPAAEAEAPA 162

Query: 160 AEAGAPEADAGAPKAEAGAPEADAGAPKAEAGAPEADAEAPKAEA 205
           AEA AP A+A AP AEA AP A+A AP AEA AP A+AEAP A A
Sbjct: 163 AEAEAPAAEAEAPAAEAEAPAAEAEAPAAEAEAPAAEAEAPAAPA 203

[Close]
BLAST of CmoCh04G027920 vs. NCBI nr
Match: gi|659118049|ref|XP_008458926.1| (PREDICTED: mucin-1 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-10
Identity = 101/226 (44.69%), Postives = 123/226 (54.42%), Query Frame = 1 

Query: 80  MARQLLLLALLF-AAVLGIASAAKAPAPDADSAAAKTPAAAPSNSSSAADAPKGAASAPK 139
           MARQ +LLALLF AAV+GI SAA+APA         +PA++P             AS+PK
Sbjct: 1   MARQFILLALLFSAAVIGIVSAAEAPAA--------SPASSP-------------ASSPK 60

Query: 140 AEADAPEADAGAPKADAGAPKAEAGAPEADAGAPKAEAGAPEADAGAPKAEAGAPEADAE 199
           A AD   +D G  K  A AP              KA A A +A      + AGAP+  A 
Sbjct: 61  A-ADLEPSDDG--KTPAAAPS-------------KAPAAAADAPIAVTPSAAGAPKGAAS 120

Query: 200 APKAEAGAPEADAGAPSADAPAGSPASGPASDES---------PSAAPESDAEASSPPSP 259
           AP A+ GAPEAD+        AG PAS PA DES         P+ AP SDAE SSPPSP
Sbjct: 121 APAAKGGAPEADSPV------AGGPASSPAGDESSSTVAPAGAPAGAPASDAEVSSPPSP 180

Query: 260 SGPAEGPASEEEA---ADAPAPDASGSGSSFLKMSATTVATIAGVI 293
           +GPA GPAS+  A   AD+PA   + SG S +K+S   VA I+GV+
Sbjct: 181 TGPAAGPASDAAADAPADSPADSPAPSGGSLVKVSVAAVAGISGVV 183

[Close]
BLAST of CmoCh04G027920 vs. NCBI nr
Match: gi|493608589|ref|WP_006561008.1| (hypothetical protein [Oscillochloris trichoides])

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 62/105 (59.05%), Postives = 73/105 (69.52%), Query Frame = 1 

Query: 100 AAKAPAPDADSAAAKTPAAAPSNSSSAADAPKGAASAPKAEADAPEADAGAPKADAGAPK 159
           AA APAP+A +A A+ PAA     + AA+A   AA AP AEA+AP A+A AP A+A AP 
Sbjct: 103 AAAAPAPEAPAAEAEAPAA----EAPAAEAEAPAAEAPAAEAEAPAAEAEAPAAEAEAPA 162

Query: 160 AEAGAPEADAGAPKAEAGAPEADAGAPKAEAGAPEADAEAPKAEA 205
           AEA AP A+A AP AEA AP A+A AP AEA AP A+AEAP A A
Sbjct: 163 AEAEAPAAEAEAPAAEAEAPAAEAEAPAAEAEAPAAEAEAPAAPA 203

The following BLAST results are available for this feature:
BLAST of CmoCh04G027920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G027920 vs. TrEMBL
Match NameE-valueIdentityDescription
E1IAV0_9CHLR2.8e-0759.05Uncharacterized protein OS=Oscillochloris trichoides DG-6 GN=OSCT_0451 PE=4 SV=1[more]
BLAST of CmoCh04G027920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G027920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659118049|ref|XP_008458926.1|5.1e-1044.69PREDICTED: mucin-1 [Cucumis melo][more]
gi|493608589|ref|WP_006561008.1|4.0e-0759.05hypothetical protein [Oscillochloris trichoides][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G027920.1CmoCh04G027920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G027920Silver-seed gourdcarcmoB0370
CmoCh04G027920Silver-seed gourdcarcmoB0940
CmoCh04G027920Cucumber (Chinese Long) v3cmocucB0869
CmoCh04G027920Cucumber (Chinese Long) v3cmocucB0848
CmoCh04G027920Watermelon (97103) v2cmowmbB772
CmoCh04G027920Wax gourdcmowgoB0836
CmoCh04G027920Cucurbita moschata (Rifu)cmocmoB261
CmoCh04G027920Cucumber (Gy14) v1cgycmoB0544
CmoCh04G027920Cucurbita maxima (Rimu)cmacmoB308
CmoCh04G027920Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G027920Wild cucumber (PI 183967)cmocpiB724
CmoCh04G027920Cucumber (Chinese Long) v2cmocuB716
CmoCh04G027920Melon (DHL92) v3.5.1cmomeB624
CmoCh04G027920Watermelon (Charleston Gray)cmowcgB608
CmoCh04G027920Watermelon (97103) v1cmowmB646
CmoCh04G027920Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G027920Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G027920Cucurbita pepo (Zucchini)cmocpeB701
CmoCh04G027920Bottle gourd (USVL1VR-Ls)cmolsiB640
CmoCh04G027920Cucumber (Gy14) v2cgybcmoB626
CmoCh04G027920Melon (DHL92) v3.6.1cmomedB713
CmoCh04G027920Melon (DHL92) v3.6.1cmomedB730