CmoCh04G026900 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G026900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPleckstrin-like (PH) and lipid-binding START domain protein
LocationCmo_Chr04 : 19581167 .. 19583597 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAATGGGAAGAAAAGAGGAACAAGGAGAGGGGTAGGTAGGGAGTTTAGAGAGCATTATCTGTTTTGTGTCTCTCTGTTAAGCTGGGGTTGGTTGGTGTGTACATAAAGAGAAATGGTTTTTCTCTGTATGAGAATTGGGTATAAGTGTTTGATTGTGCAATTCTTAGCTTCATCGTCACGAATACGAGCATTACGGATACAATTGGCATAATGGGTCGGGTTGGGTCGAGTCGATTTTTTCCACTCTGTTAGTCATAAAGAGAGATAGAGAAGAAAAAACAGGTCAGGTTGAGTCGGTTGTTCCCCTTTACTAGTCATAAGGAAAGATAGAGTAGAAAAACATGCCCGAATCGTTAGATCATTAATATTCTTACTTAGTGATTTGAATACGTGCATTAGAGATACCATCGATATAAATGGGTTGGAGAGGGGAACAAAACATTTTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGATACGTTTTAAAATCGTGAGGTTGACGACGATATGTAATGGGTGGACAATATCTGCAAGCGGTAACCTTGGTTTGTTACAAATGGTATAAGAGTCAGACACCAGATAGTGTGTCAACAAGGACGTAGGACCTCTAAGGGGGTGGATTGCGAGATCACACATCGGTTGGAGATGGGAACAAAGCATTCGTTACAAGGGTGTGGAAACCTTTCCCTATCAGACGCATTTTAAAATCGTGAGGCTGACGATGATACATAACATACTAGAGTAGACAATATTTACTAGCAGTAGCTTGAGTTGTTACAGACCACCACTAAACCTAAAGTTTAAGGTGATTCGTCACTTATTAGTAACAAGTGATTAACAATAGCTTAAATTACAAGTTTGATTCCTTGATCCTTTGAGGGTCGTGTTAAATAGGCCTTTGAATTTTATAATATGTCTAACATCATTAAACCGTCAATTTTATGTTTACTAAACCTCGAAACTTCAAGGGTGTATAATCAGTCTCTAAGTGTCGATATTGGACACAATTTTGAATGTTTAATATCCCATTAGACACAAAATTGTTTTAAAATGTTTAATATGTAAAAAATTTATCAGACGTAAAATTGAAAACTCAATGATGTTTTTGATCTTTCAGAGTTTGTTTGGTCGGAGGTTTTATTTAAAATGTCTAATAATCAAATAGTTATGTCAACAAGATATAACAAATGTAATATATTTTTTTTATTAATATTCTTAACTTATTAAACCGAGTCGATTGAGTTGATTTTACACTTATACCCCTGGGTTTTAGTTTTCATGACAATCATTATTGTTTAAATGACTTGTTTTATTTGTTTTTGTTATTCCAGAAGTAGGGCATCTTTCTGGAAATGACATTACTACCCTCATTTGCATAAATAGTAAGTGAGAGATATTTTTTTTATAAATATTTTTCTTTATTTTGAATAGAGGAAGAGATTTTTTTAAGTAAAAGATTTTGTGGTTTGACTTTTAAAAAAAGTCAATTTTTTTTAAGGGCTGACATTCCAATATATTGGGAACCATACACTTGGTTTCCCTCACTCCCGACCATACCATTTTTGGATTAAAAAAAAACTCATATTTTCATTAATTTGTTTTTTCCTTTATAGTCTTAAATATTCTATTATAAAAAATCCACAAAAAATATTAATTATTAATTATTTGAATTAATTATATTAAAGTATAATTTATAAATCATATAAATTTAATTATTGGAAATTCTTAGTGGATAAGATATTTGATTATTAGGTATTAAAATCACAAATATATGTATATATATTAGAAGGGTAAAATAGTAATTTCGGATATGGTAATTGTTTTTCTTGTACGCCAAAATTCAGCGTGTTTAAAAACGAGAAAGAAAGAACAAACGAACATTAAGAACGAAGAGGAACGAATTCTGAACTCTGATTTTGCCGCCATTGATTCTCTGATTCCCTTCGTCGGAATCAGAGAGTCATTTCAATCCTCCGTTTCTTCAACGTCTCTTTTCTTCATAATCATACGCTACAAATCTCAATCACTACTCTCCATTTCTCTGTTTCAAGCCTTCTTTGGGGAATTTTTTGGTATTAAAATCGATCGCCATTCGCCATTTCAATGAAATTGCTCTAAAGATCATCTGTTCCTGAATCCGGGCGTTGGTTTACCTTCTGCAATGGGGGCCCCTAAAAATGACGGCAAAATGGAAGGTTGGTTGTATCTCATCCGGTCCAATCGGTTCGGGTTGCAGTACTCGAAGAAGAGATTCTTCGTTCTCCAGGATGACTGCCTCAAGAGCTTCAAATCCGTCCCTGTTTCTGAGGATGAGGTAAGAATTTATTTCACACGATTTAATTGGGAACTCGTTTGTGTGGTCTTGTTTTCTATCGCCCGTTCATGTTTCTTGGGGTCGAAATTTTTGCAGGATGGATGTGTTTAA

mRNA sequence

ATGAATAATGGGAAGAAAAGAGGAACAAGGAGAGGGGTAGGTAGGGAGTTTAGAGAGCATTATCTGTTTTGTGTCTCTCTGTTAAGCTGGGAAGTAGGGCATCTTTCTGGAAATGACATTACTACCCTCATTTGCATAAATAATCATCTGTTCCTGAATCCGGGCGTTGGTTTACCTTCTGCAATGGGGGCCCCTAAAAATGACGGCAAAATGGAAGGTTGGTTGTATCTCATCCGGTCCAATCGGTTCGGGTTGCAGTACTCGAAGAAGAGATTCTTCGTTCTCCAGGATGACTGCCTCAAGAGCTTCAAATCCGTCCCTGTTTCTGAGGATGAGGATGGATGTGTTTAA

Coding sequence (CDS)

ATGAATAATGGGAAGAAAAGAGGAACAAGGAGAGGGGTAGGTAGGGAGTTTAGAGAGCATTATCTGTTTTGTGTCTCTCTGTTAAGCTGGGAAGTAGGGCATCTTTCTGGAAATGACATTACTACCCTCATTTGCATAAATAATCATCTGTTCCTGAATCCGGGCGTTGGTTTACCTTCTGCAATGGGGGCCCCTAAAAATGACGGCAAAATGGAAGGTTGGTTGTATCTCATCCGGTCCAATCGGTTCGGGTTGCAGTACTCGAAGAAGAGATTCTTCGTTCTCCAGGATGACTGCCTCAAGAGCTTCAAATCCGTCCCTGTTTCTGAGGATGAGGATGGATGTGTTTAA
Homology
[Close]
BLAST of CmoCh04G026900 vs. TrEMBL
Match: A0A0A0KJ81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G405930 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.9e-18
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 

Query: 62  MGAPKNDGKMEGWLYLIRSNRFGLQYSKKRFFVLQDDCLKSFKSVPVSEDED 114
           MGAP  DGKMEGWLYLIRSNRFGLQYS+KR+FVLQDDCLKSFKSVPVS +E+
Sbjct: 1   MGAPIEDGKMEGWLYLIRSNRFGLQYSQKRYFVLQDDCLKSFKSVPVSGNEE 52

[Close]
BLAST of CmoCh04G026900 vs. TrEMBL
Match: D7SKZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02720 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1 

Query: 62  MGAPKNDGKMEGWLYLIRSNRFGLQYSKKRFFVLQDDCLKSFKSVPVSEDE 113
           MG  +NDG+MEGWL+LIRSNRFGLQYS+KR+FVL+D  LKSFKSVP+S+DE
Sbjct: 1   MGVSQNDGRMEGWLFLIRSNRFGLQYSRKRYFVLEDHYLKSFKSVPISKDE 51

[Close]
BLAST of CmoCh04G026900 vs. TrEMBL
Match: A0A068TUX3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029432001 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-13
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 1 

Query: 62  MGAPKNDGKMEGWLYLIRSNRFGLQYSKKRFFVLQDDCLKSFKSVPVSEDED 114
           M +P+++ +MEGWLYLIR NRFGLQYS+KR+F+L+D CLKSFKSVP SE E+
Sbjct: 1   MESPQSEERMEGWLYLIRFNRFGLQYSRKRYFILEDYCLKSFKSVPTSEREE 52

[Close]
BLAST of CmoCh04G026900 vs. TrEMBL
Match: W9QRN6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002656 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-13
Identity = 35/52 (67.31%), Postives = 46/52 (88.46%), Query Frame = 1 

Query: 62  MGAPKNDGKMEGWLYLIRSNRFGLQYSKKRFFVLQDDCLKSFKSVPVSEDED 114
           M   +NDGKMEGWLYLIR NRFGLQYS+KR+F+L+D  L+SFK++P+SE+E+
Sbjct: 1   MSIHQNDGKMEGWLYLIRFNRFGLQYSRKRYFILKDHFLRSFKTIPISENEE 52

[Close]
BLAST of CmoCh04G026900 vs. TrEMBL
Match: B9T815_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0368710 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.8e-13
Identity = 32/52 (61.54%), Postives = 46/52 (88.46%), Query Frame = 1 

Query: 62  MGAPKNDGKMEGWLYLIRSNRFGLQYSKKRFFVLQDDCLKSFKSVPVSEDED 114
           M  P+N G+MEGWLY IRSNRFGLQ+S+KR+F+L+++CLK +K++P+SE E+
Sbjct: 1   MDMPQNIGRMEGWLYTIRSNRFGLQFSRKRYFILEENCLKCYKTIPISEAEE 52

[Close]
BLAST of CmoCh04G026900 vs. TAIR10
Match: AT3G54800.1 (AT3G54800.1 Pleckstrin homology (PH) and lipid-binding START domains-containing protein)

HSP 1 Score: 73.6 bits (179), Expect = 9.3e-14
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 62  MGAPKNDGKMEGWLYLIRSNRFGLQYSKKRFFVLQDDCLKSFKSVPVSEDED 114
           MG  + DG+MEGWLY IR NRFGLQ+S+KR+FVL ++ L SFKSVP   +E+
Sbjct: 1   MGVSQTDGRMEGWLYTIRHNRFGLQFSRKRYFVLHENNLTSFKSVPSDHNEE 52

[Close]
BLAST of CmoCh04G026900 vs. TAIR10
Match: AT2G28320.1 (AT2G28320.1 Pleckstrin homology (PH) and lipid-binding START domains-containing protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 66  KNDGKMEGWLYLIRSNRFGLQYSKKRFFVLQDDCLKSFKSVPVSEDED 114
           +++ KMEGWLY+IRSNRFGL +S+KR+FVL D  LKSFKS+  S+ ++
Sbjct: 8   ESETKMEGWLYIIRSNRFGLHFSRKRYFVLGDHLLKSFKSISDSKTKN 55

[Close]
BLAST of CmoCh04G026900 vs. NCBI nr
Match: gi|659113276|ref|XP_008456489.1| (PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 3.1e-19
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 1 

Query: 62  MGAPKNDGKMEGWLYLIRSNRFGLQYSKKRFFVLQDDCLKSFKSVPVSEDED 114
           MGAP NDGKMEGWLYLIRSNRFGLQYS+KR+FVLQDDCLKSFKSVPVSE+E+
Sbjct: 1   MGAPINDGKMEGWLYLIRSNRFGLQYSQKRYFVLQDDCLKSFKSVPVSENEE 52

[Close]
BLAST of CmoCh04G026900 vs. NCBI nr
Match: gi|659113278|ref|XP_008456490.1| (PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 3.1e-19
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 1 

Query: 62  MGAPKNDGKMEGWLYLIRSNRFGLQYSKKRFFVLQDDCLKSFKSVPVSEDED 114
           MGAP NDGKMEGWLYLIRSNRFGLQYS+KR+FVLQDDCLKSFKSVPVSE+E+
Sbjct: 1   MGAPINDGKMEGWLYLIRSNRFGLQYSQKRYFVLQDDCLKSFKSVPVSENEE 52

[Close]
BLAST of CmoCh04G026900 vs. NCBI nr
Match: gi|449464402|ref|XP_004149918.1| (PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-17
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 

Query: 62  MGAPKNDGKMEGWLYLIRSNRFGLQYSKKRFFVLQDDCLKSFKSVPVSEDED 114
           MGAP  DGKMEGWLYLIRSNRFGLQYS+KR+FVLQDDCLKSFKSVPVS +E+
Sbjct: 1   MGAPIEDGKMEGWLYLIRSNRFGLQYSQKRYFVLQDDCLKSFKSVPVSGNEE 52

[Close]
BLAST of CmoCh04G026900 vs. NCBI nr
Match: gi|719992857|ref|XP_010253703.1| (PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Nelumbo nucifera])

HSP 1 Score: 89.4 bits (220), Expect = 4.6e-15
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 1 

Query: 62  MGAPKNDGKMEGWLYLIRSNRFGLQYSKKRFFVLQDDCLKSFKSVPVSEDED 114
           MG  + DGKMEGWLYLIRSNR GLQYS+KR+F+LQ++CLK+FKS+P SE+ED
Sbjct: 1   MGISQKDGKMEGWLYLIRSNRIGLQYSRKRYFILQNNCLKNFKSMPTSEEED 52

[Close]
BLAST of CmoCh04G026900 vs. NCBI nr
Match: gi|731392674|ref|XP_010651179.1| (PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Vitis vinifera])

HSP 1 Score: 89.4 bits (220), Expect = 4.6e-15
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1 

Query: 62  MGAPKNDGKMEGWLYLIRSNRFGLQYSKKRFFVLQDDCLKSFKSVPVSEDE 113
           MG  +NDG+MEGWL+LIRSNRFGLQYS+KR+FVL+D  LKSFKSVP+S+DE
Sbjct: 1   MGVSQNDGRMEGWLFLIRSNRFGLQYSRKRYFVLEDHYLKSFKSVPISKDE 51

The following BLAST results are available for this feature:
BLAST of CmoCh04G026900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ81_CUCSA6.9e-1886.54Uncharacterized protein OS=Cucumis sativus GN=Csa_6G405930 PE=4 SV=1[more]
D7SKZ7_VITVI3.2e-1576.47Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02720 PE=4 SV=... [more]
A0A068TUX3_COFCA2.3e-1369.23Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029432001 PE=4 SV=1[more]
W9QRN6_9ROSA2.3e-1367.31Uncharacterized protein OS=Morus notabilis GN=L484_002656 PE=4 SV=1[more]
B9T815_RICCO8.8e-1361.54Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0368710 PE=4 SV=1[more]
BLAST of CmoCh04G026900 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G54800.19.3e-1461.54 Pleckstrin homology (PH) and lipid-binding START domains-containing ... [more]
AT2G28320.11.9e-1160.42 Pleckstrin homology (PH) and lipid-binding START domains-containing ... [more]
BLAST of CmoCh04G026900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113276|ref|XP_008456489.1|3.1e-1990.38PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like isoform X1 [Cucumis melo][more]
gi|659113278|ref|XP_008456490.1|3.1e-1990.38PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like isoform X2 [Cucumis melo][more]
gi|449464402|ref|XP_004149918.1|1.0e-1786.54PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Cucumis sativus][more]
gi|719992857|ref|XP_010253703.1|4.6e-1573.08PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Nelumbo nucifera][more]
gi|731392674|ref|XP_010651179.1|4.6e-1576.47PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0008289 lipid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G026900.1CmoCh04G026900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011993PH domain-likeGENE3DG3DSA:2.30.29.30coord: 66..105
score: 3.
IPR011993PH domain-likeunknownSSF50729PH domain-likecoord: 62..107
score: 1.0
NoneNo IPR availablePANTHERPTHR12136STEROIDOGENIC ACUTE REGULATORY PROTEIN STARcoord: 67..113
score: 9.8
NoneNo IPR availablePANTHERPTHR12136:SF56SUBFAMILY NOT NAMEDcoord: 67..113
score: 9.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G026900Lsi08G007180Bottle gourd (USVL1VR-Ls)cmolsiB697
CmoCh04G026900Cp4.1LG01g24450Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G026900Cp4.1LG13g10000Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G026900MELO3C019806.2Melon (DHL92) v3.6.1cmomedB755
CmoCh04G026900CsaV3_6G036520Cucumber (Chinese Long) v3cmocucB0901
CmoCh04G026900Cla97C08G150300Watermelon (97103) v2cmowmbB762
CmoCh04G026900Bhi04G001101Wax gourdcmowgoB0866
CmoCh04G026900Carg04563Silver-seed gourdcarcmoB0940
CmoCh04G026900Carg02410Silver-seed gourdcarcmoB0370
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G026900CmoCh15G004740Cucurbita moschata (Rifu)cmocmoB261
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G026900Cucumber (Chinese Long) v3cmocucB0856
CmoCh04G026900Watermelon (97103) v2cmowmbB741
CmoCh04G026900Wax gourdcmowgoB0859
CmoCh04G026900Wax gourdcmowgoB0894
CmoCh04G026900Cucurbita moschata (Rifu)cmocmoB345
CmoCh04G026900Cucurbita moschata (Rifu)cmocmoB468
CmoCh04G026900Cucurbita moschata (Rifu)cmocmoB476
CmoCh04G026900Cucumber (Gy14) v1cgycmoB0381
CmoCh04G026900Cucumber (Gy14) v1cgycmoB0849
CmoCh04G026900Cucurbita maxima (Rimu)cmacmoB308
CmoCh04G026900Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G026900Cucurbita maxima (Rimu)cmacmoB740
CmoCh04G026900Cucurbita maxima (Rimu)cmacmoB866
CmoCh04G026900Wild cucumber (PI 183967)cmocpiB697
CmoCh04G026900Wild cucumber (PI 183967)cmocpiB736
CmoCh04G026900Wild cucumber (PI 183967)cmocpiB772
CmoCh04G026900Cucumber (Chinese Long) v2cmocuB685
CmoCh04G026900Cucumber (Chinese Long) v2cmocuB727
CmoCh04G026900Cucumber (Chinese Long) v2cmocuB763
CmoCh04G026900Melon (DHL92) v3.5.1cmomeB652
CmoCh04G026900Melon (DHL92) v3.5.1cmomeB667
CmoCh04G026900Watermelon (Charleston Gray)cmowcgB665
CmoCh04G026900Watermelon (Charleston Gray)cmowcgB682
CmoCh04G026900Watermelon (97103) v1cmowmB663
CmoCh04G026900Watermelon (97103) v1cmowmB704
CmoCh04G026900Watermelon (97103) v1cmowmB717
CmoCh04G026900Cucurbita pepo (Zucchini)cmocpeB689
CmoCh04G026900Cucurbita pepo (Zucchini)cmocpeB693
CmoCh04G026900Bottle gourd (USVL1VR-Ls)cmolsiB626
CmoCh04G026900Bottle gourd (USVL1VR-Ls)cmolsiB676
CmoCh04G026900Cucumber (Gy14) v2cgybcmoB233
CmoCh04G026900Cucumber (Gy14) v2cgybcmoB635
CmoCh04G026900Cucumber (Gy14) v2cgybcmoB818
CmoCh04G026900Melon (DHL92) v3.6.1cmomedB742
CmoCh04G026900Silver-seed gourdcarcmoB1136