CmoCh04G025540 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G025540
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 18720361 .. 18720639 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTCTCTATTATTGGCCTCTCACCTTCTATCTCTTCTCATTGCTTCTCTCTCTCTACATCTCCCATCACAATTGGCTACTGCACATTACTACATTCACCCATACCAATACCAACTTCCTCCGCCGTCTTCGCCGCCGCCTCCGCCTGAAAATCTCTCGTCTCCGCCGCCACCCAAGAAGCAATACAAATTGAGGTCACTGCTGCAGAGGCGCATGCCACGCATTAGGCCATGGCCAAGGAGGGCCACCCGTAAATCGCCTCCGCCGCCTTTCTAA

mRNA sequence

ATGGGCTCTCTATTATTGGCCTCTCACCTTCTATCTCTTCTCATTGCTTCTCTCTCTCTACATCTCCCATCACAATTGGCTACTGCACATTACTACATTCACCCATACCAATACCAACTTCCTCCGCCGTCTTCGCCGCCGCCTCCGCCTGAAAATCTCTCGTCTCCGCCGCCACCCAAGAAGCAATACAAATTGAGGTCACTGCTGCAGAGGCGCATGCCACGCATTAGGCCATGGCCAAGGAGGGCCACCCGTAAATCGCCTCCGCCGCCTTTCTAA

Coding sequence (CDS)

ATGGGCTCTCTATTATTGGCCTCTCACCTTCTATCTCTTCTCATTGCTTCTCTCTCTCTACATCTCCCATCACAATTGGCTACTGCACATTACTACATTCACCCATACCAATACCAACTTCCTCCGCCGTCTTCGCCGCCGCCTCCGCCTGAAAATCTCTCGTCTCCGCCGCCACCCAAGAAGCAATACAAATTGAGGTCACTGCTGCAGAGGCGCATGCCACGCATTAGGCCATGGCCAAGGAGGGCCACCCGTAAATCGCCTCCGCCGCCTTTCTAA
Homology
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BLAST of CmoCh04G025540 vs. NCBI nr
Match: gi|700192262|gb|KGN47466.1| (hypothetical protein Csa_6G336260 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-06
Identity = 54/101 (53.47%), Postives = 62/101 (61.39%), Query Frame = 1 

Query: 1  MGSLLLASHLLSLLIASLSLHLPSQLATAHYYIHP------YQYQLPP-PSSPPPPPENL 60
          MG   LAS+L SLLIA   L+LPS+L TAH YIH       Y+Y  PP P  PPPP    
Sbjct: 1  MGFETLASYLFSLLIAFFFLNLPSKL-TAH-YIHQSSSTNLYEYGPPPLPLLPPPPICRQ 60

Query: 61 SSPPPPKKQYKLRSL--LQRRMPRIRPWPRRATRKSPPPPF 93
           +PPP KKQ KL+ L  L    P+ + WPRR T KSPPPPF
Sbjct: 61 GAPPPAKKQNKLKPLPSLSPPPPKFK-WPRRFTPKSPPPPF 98

The following BLAST results are available for this feature:
BLAST of CmoCh04G025540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G025540 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh04G025540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G025540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192262|gb|KGN47466.1|5.3e-0653.47hypothetical protein Csa_6G336260 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G025540.1CmoCh04G025540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G025540Watermelon (97103) v2cmowmbB760
CmoCh04G025540Watermelon (97103) v2cmowmbB770
CmoCh04G025540Wax gourdcmowgoB0865
CmoCh04G025540Cucurbita moschata (Rifu)cmocmoB029
CmoCh04G025540Cucurbita moschata (Rifu)cmocmoB262
CmoCh04G025540Cucurbita moschata (Rifu)cmocmoB367
CmoCh04G025540Cucumber (Gy14) v1cgycmoB0137
CmoCh04G025540Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G025540Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G025540Cucumber (Chinese Long) v2cmocuB771
CmoCh04G025540Melon (DHL92) v3.5.1cmomeB672
CmoCh04G025540Watermelon (Charleston Gray)cmowcgB605
CmoCh04G025540Watermelon (Charleston Gray)cmowcgB680
CmoCh04G025540Watermelon (97103) v1cmowmB661
CmoCh04G025540Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G025540Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G025540Cucurbita pepo (Zucchini)cmocpeB708
CmoCh04G025540Bottle gourd (USVL1VR-Ls)cmolsiB643
CmoCh04G025540Bottle gourd (USVL1VR-Ls)cmolsiB697
CmoCh04G025540Cucumber (Gy14) v2cgybcmoB950
CmoCh04G025540Silver-seed gourdcarcmoB0094
CmoCh04G025540Silver-seed gourdcarcmoB1121
CmoCh04G025540Cucumber (Chinese Long) v3cmocucB0902
CmoCh04G025540Cucumber (Chinese Long) v3cmocucB0911