CmoCh04G025450 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G025450
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionGlycolipid transfer protein (GLTP) family protein
LocationCmo_Chr04 : 18676348 .. 18676732 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAAGTGATAATTGAGGTCAACAATTTCTCAAGTTTCAGAGCTTTCTTTTCTGAGCTGCAGAAGGGTTTTGATTTGATACATGAAGAGGAAGAGAGCAGCGGAAATGGAGTCAGAAATGAGGTCTGCAACGGCGCAGCTTTCGGTGGATCATGCCGCTCCCGACATACCCACCAAGCCCTTTCTTTCTCTTTGCTATGTGATCCTTCGATTTCTGGGTATTTCTCTGTTCCTCTCTGAGAATTGTAGAAAGGGAATGGAATGGTTGTGTTAAATGGGGGATTTTGTTGTTGTTGTTGTTGCTGCTGCAGATAAGGTAGGGCCGACAATGGCGGTTCTCCGACAGGACATTCATCAGAACATTCAGGTAGAAACAGAGCATTAA

mRNA sequence

AGGAAAGTGATAATTGAGGTCAACAATTTCTCAAGTTTCAGAGCTTTCTTTTCTGAGCTGCAGAAGGGTTTTGATTTGATACATGAAGAGGAAGAGAGCAGCGGAAATGGAGTCAGAAATGAGGTCTGCAACGGCGCAGCTTTCGGTGGATCATGCCGCTCCCGACATACCCACCAAGCCCTTTCTTTCTCTTTGCTATGTGATCCTTCGATTTCTGGATAAGGTAGGGCCGACAATGGCGGTTCTCCGACAGGACATTCATCAGAACATTCAGGTAGAAACAGAGCATTAA

Coding sequence (CDS)

ATGAAGAGGAAGAGAGCAGCGGAAATGGAGTCAGAAATGAGGTCTGCAACGGCGCAGCTTTCGGTGGATCATGCCGCTCCCGACATACCCACCAAGCCCTTTCTTTCTCTTTGCTATGTGATCCTTCGATTTCTGGATAAGGTAGGGCCGACAATGGCGGTTCTCCGACAGGACATTCATCAGAACATTCAGGTAGAAACAGAGCATTAA
Homology
[Close]
BLAST of CmoCh04G025450 vs. Swiss-Prot
Match: GLTP2_ARATH (Glycolipid transfer protein 2 OS=Arabidopsis thaliana GN=GLTP2 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-08
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 1  MKRKRAAEME----SEMRSATAQLSV--------DHAAPDIPTKPFLSLCYVILRFLDKV 60
          MKRKR  EME    +E+++A  +LSV           A  IP +P LS C +I++ LDK+
Sbjct: 1  MKRKRY-EMEKKKKTEIQTAIEELSVFIVTKPADKTEATHIPLRPILSFCSLIIQVLDKI 60

Query: 61 GPTMAVLRQDIHQNIQ 65
          GPTMAVLRQDI QNIQ
Sbjct: 61 GPTMAVLRQDIDQNIQ 75

[Close]
BLAST of CmoCh04G025450 vs. Swiss-Prot
Match: GLTP3_ARATH (Glycolipid transfer protein 3 OS=Arabidopsis thaliana GN=GLTP3 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.7e-07
Identity = 39/86 (45.35%), Postives = 48/86 (55.81%), Query Frame = 1 

Query: 1  MKRKRAAEME--------SEMRSATAQLSVDHAAP--------------DIPTKPFLSLC 60
          MKRKR  EME        +E+ SA  +LSV   A               ++P KP LS C
Sbjct: 1  MKRKRC-EMEETTKKKKMTEIGSAIEELSVLSIAKTTIVTTEKEAINIINLPLKPLLSFC 60

Query: 61 YVILRFLDKVGPTMAVLRQDIHQNIQ 65
           +I++ LDK+GPTMAVLR DI QNIQ
Sbjct: 61 NIIVQVLDKIGPTMAVLRHDIDQNIQ 85

[Close]
BLAST of CmoCh04G025450 vs. TrEMBL
Match: I3SL95_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.2e-13
Identity = 47/74 (63.51%), Postives = 53/74 (71.62%), Query Frame = 1 

Query: 1  MKRKRAAEMESEMRSATAQLSV--------DH-AAPDIPTKPFLSLCYVILRFLDKVGPT 60
          MKR R  E  SE+ SA  +LSV        DH A   IPTKPFLSLCY++L+ LDKVGPT
Sbjct: 1  MKRSRDIEKRSEINSAIEELSVLVIVKPEEDHEAGARIPTKPFLSLCYMVLQVLDKVGPT 60

Query: 61 MAVLRQDIHQNIQV 66
          MAVLRQDIHQNI+V
Sbjct: 61 MAVLRQDIHQNIKV 74

[Close]
BLAST of CmoCh04G025450 vs. TrEMBL
Match: A0A0L9UFY5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g164200 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-12
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1 

Query: 1  MKRKRAAEMESEMRSATAQLSV--------DHAAPDIPTKPFLSLCYVILRFLDKVGPTM 60
          MKR R  E  SE+ SA  +LS+        +H   +IPTKPFLSLCY++L+ LDK+GPTM
Sbjct: 1  MKRSRDMEKRSEINSAIEELSLLAIVKPGGNHETANIPTKPFLSLCYMVLQVLDKIGPTM 60

Query: 61 AVLRQDIHQNIQ 65
          AVLRQD+HQNI+
Sbjct: 61 AVLRQDVHQNIK 72

[Close]
BLAST of CmoCh04G025450 vs. TrEMBL
Match: G7J670_MEDTR (Glycolipid transfer protein (GLTP) family protein OS=Medicago truncatula GN=MTR_3g090530 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-12
Identity = 46/73 (63.01%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 1  MKRKRAAEMESEMRSATAQLSV--------DH-AAPDIPTKPFLSLCYVILRFLDKVGPT 60
          MKR R  E  SE+ SA  +LSV        DH A   IPTKPFLSLCY++L+ LDKVGPT
Sbjct: 1  MKRSRDIEKRSEINSAIEELSVLVIVKPEEDHEAGARIPTKPFLSLCYMVLQVLDKVGPT 60

Query: 61 MAVLRQDIHQNIQ 65
          MAVLRQDIHQNI+
Sbjct: 61 MAVLRQDIHQNIK 73

[Close]
BLAST of CmoCh04G025450 vs. TrEMBL
Match: A0A072V0U8_MEDTR (Glycolipid transfer protein (GLTP) family protein OS=Medicago truncatula GN=MTR_3g090530 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-12
Identity = 46/73 (63.01%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 1  MKRKRAAEMESEMRSATAQLSV--------DH-AAPDIPTKPFLSLCYVILRFLDKVGPT 60
          MKR R  E  SE+ SA  +LSV        DH A   IPTKPFLSLCY++L+ LDKVGPT
Sbjct: 1  MKRSRDIEKRSEINSAIEELSVLVIVKPEEDHEAGARIPTKPFLSLCYMVLQVLDKVGPT 60

Query: 61 MAVLRQDIHQNIQ 65
          MAVLRQDIHQNI+
Sbjct: 61 MAVLRQDIHQNIK 73

[Close]
BLAST of CmoCh04G025450 vs. TrEMBL
Match: A0A072V250_MEDTR (Glycolipid transfer protein (GLTP) family protein OS=Medicago truncatula GN=MTR_3g090530 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-12
Identity = 46/73 (63.01%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 1  MKRKRAAEMESEMRSATAQLSV--------DH-AAPDIPTKPFLSLCYVILRFLDKVGPT 60
          MKR R  E  SE+ SA  +LSV        DH A   IPTKPFLSLCY++L+ LDKVGPT
Sbjct: 1  MKRSRDIEKRSEINSAIEELSVLVIVKPEEDHEAGARIPTKPFLSLCYMVLQVLDKVGPT 60

Query: 61 MAVLRQDIHQNIQ 65
          MAVLRQDIHQNI+
Sbjct: 61 MAVLRQDIHQNIK 73

[Close]
BLAST of CmoCh04G025450 vs. TAIR10
Match: AT1G21360.1 (AT1G21360.1 glycolipid transfer protein 2)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-09
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 1  MKRKRAAEME----SEMRSATAQLSV--------DHAAPDIPTKPFLSLCYVILRFLDKV 60
          MKRKR  EME    +E+++A  +LSV           A  IP +P LS C +I++ LDK+
Sbjct: 1  MKRKRY-EMEKKKKTEIQTAIEELSVFIVTKPADKTEATHIPLRPILSFCSLIIQVLDKI 60

Query: 61 GPTMAVLRQDIHQNIQ 65
          GPTMAVLRQDI QNIQ
Sbjct: 61 GPTMAVLRQDIDQNIQ 75

[Close]
BLAST of CmoCh04G025450 vs. TAIR10
Match: AT3G21260.3 (AT3G21260.3 Glycolipid transfer protein (GLTP) family protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-08
Identity = 39/86 (45.35%), Postives = 48/86 (55.81%), Query Frame = 1 

Query: 1  MKRKRAAEME--------SEMRSATAQLSVDHAAP--------------DIPTKPFLSLC 60
          MKRKR  EME        +E+ SA  +LSV   A               ++P KP LS C
Sbjct: 1  MKRKRC-EMEETTKKKKMTEIGSAIEELSVLSIAKTTIVTTEKEAINIINLPLKPLLSFC 60

Query: 61 YVILRFLDKVGPTMAVLRQDIHQNIQ 65
           +I++ LDK+GPTMAVLR DI QNIQ
Sbjct: 61 NIIVQVLDKIGPTMAVLRHDIDQNIQ 85

[Close]
BLAST of CmoCh04G025450 vs. NCBI nr
Match: gi|449462166|ref|XP_004148812.1| (PREDICTED: pleckstrin homology domain-containing family A member 8 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-15
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 1 

Query: 1  MKRKRAAEMESEMRSATAQLSV-------DHAAPDIPTKPFLSLCYVILRFLDKVGPTMA 60
          MKRKR  E ESEMRS+TA+LSV       DHAA  IPT  FLS+C +IL+FLDKVGPTM 
Sbjct: 1  MKRKREVEKESEMRSSTAELSVLAKFKPVDHAASSIPTNHFLSICNLILQFLDKVGPTMT 60

Query: 61 VLRQDIHQNIQ 65
          VLRQDI+QNIQ
Sbjct: 61 VLRQDIYQNIQ 71

[Close]
BLAST of CmoCh04G025450 vs. NCBI nr
Match: gi|659081850|ref|XP_008441542.1| (PREDICTED: pleckstrin homology domain-containing family A member 8-like [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 4.7e-15
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 1 

Query: 1  MKRKRAAEMESEMRSATAQLSV-------DHAAPDIPTKPFLSLCYVILRFLDKVGPTMA 60
          MKRKR  E ESEMRS+TA+LSV       DHAA +IPT  FL++C +IL+FLDKVGPTM 
Sbjct: 1  MKRKREVEKESEMRSSTAELSVLAKFKPVDHAASNIPTNHFLAICNLILQFLDKVGPTMT 60

Query: 61 VLRQDIHQNIQ 65
          VLRQDI+QNIQ
Sbjct: 61 VLRQDIYQNIQ 71

[Close]
BLAST of CmoCh04G025450 vs. NCBI nr
Match: gi|502136192|ref|XP_004502592.1| (PREDICTED: glycolipid transfer protein 2-like [Cicer arietinum])

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-13
Identity = 45/72 (62.50%), Postives = 52/72 (72.22%), Query Frame = 1 

Query: 1  MKRKRAAEMESEMRSATAQLSV--------DHAAPDIPTKPFLSLCYVILRFLDKVGPTM 60
          MKR R  E +SE+ SA  +LSV        +H    IPTKPFLSLCY+IL+ LDKVGPTM
Sbjct: 1  MKRSRDTEKKSEINSAIEELSVLVIVKPGKNHETAHIPTKPFLSLCYMILQVLDKVGPTM 60

Query: 61 AVLRQDIHQNIQ 65
          AVLRQDIHQNI+
Sbjct: 61 AVLRQDIHQNIK 72

[Close]
BLAST of CmoCh04G025450 vs. NCBI nr
Match: gi|388505942|gb|AFK41037.1| (unknown [Medicago truncatula])

HSP 1 Score: 81.3 bits (199), Expect = 7.5e-13
Identity = 47/74 (63.51%), Postives = 53/74 (71.62%), Query Frame = 1 

Query: 1  MKRKRAAEMESEMRSATAQLSV--------DH-AAPDIPTKPFLSLCYVILRFLDKVGPT 60
          MKR R  E  SE+ SA  +LSV        DH A   IPTKPFLSLCY++L+ LDKVGPT
Sbjct: 1  MKRSRDIEKRSEINSAIEELSVLVIVKPEEDHEAGARIPTKPFLSLCYMVLQVLDKVGPT 60

Query: 61 MAVLRQDIHQNIQV 66
          MAVLRQDIHQNI+V
Sbjct: 61 MAVLRQDIHQNIKV 74

[Close]
BLAST of CmoCh04G025450 vs. NCBI nr
Match: gi|922382319|ref|XP_013461387.1| (glycolipid transfer protein (GLTP) family protein [Medicago truncatula])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-12
Identity = 46/73 (63.01%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 1  MKRKRAAEMESEMRSATAQLSV--------DH-AAPDIPTKPFLSLCYVILRFLDKVGPT 60
          MKR R  E  SE+ SA  +LSV        DH A   IPTKPFLSLCY++L+ LDKVGPT
Sbjct: 1  MKRSRDIEKRSEINSAIEELSVLVIVKPEEDHEAGARIPTKPFLSLCYMVLQVLDKVGPT 60

Query: 61 MAVLRQDIHQNIQ 65
          MAVLRQDIHQNI+
Sbjct: 61 MAVLRQDIHQNIK 73

The following BLAST results are available for this feature:
BLAST of CmoCh04G025450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GLTP2_ARATH2.5e-0851.32Glycolipid transfer protein 2 OS=Arabidopsis thaliana GN=GLTP2 PE=2 SV=1[more]
GLTP3_ARATH4.7e-0745.35Glycolipid transfer protein 3 OS=Arabidopsis thaliana GN=GLTP3 PE=2 SV=1[more]
BLAST of CmoCh04G025450 vs. TrEMBL
Match NameE-valueIdentityDescription
I3SL95_MEDTR5.2e-1363.51Uncharacterized protein OS=Medicago truncatula PE=2 SV=1[more]
A0A0L9UFY5_PHAAN1.5e-1256.94Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g164200 PE=4 SV=1[more]
G7J670_MEDTR1.5e-1263.01Glycolipid transfer protein (GLTP) family protein OS=Medicago truncatula GN=MTR_... [more]
A0A072V0U8_MEDTR1.5e-1263.01Glycolipid transfer protein (GLTP) family protein OS=Medicago truncatula GN=MTR_... [more]
A0A072V250_MEDTR1.5e-1263.01Glycolipid transfer protein (GLTP) family protein OS=Medicago truncatula GN=MTR_... [more]
BLAST of CmoCh04G025450 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21360.11.4e-0951.32 glycolipid transfer protein 2[more]
AT3G21260.32.6e-0845.35 Glycolipid transfer protein (GLTP) family protein[more]
BLAST of CmoCh04G025450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462166|ref|XP_004148812.1|2.8e-1569.01PREDICTED: pleckstrin homology domain-containing family A member 8 [Cucumis sati... [more]
gi|659081850|ref|XP_008441542.1|4.7e-1567.61PREDICTED: pleckstrin homology domain-containing family A member 8-like [Cucumis... [more]
gi|502136192|ref|XP_004502592.1|4.4e-1362.50PREDICTED: glycolipid transfer protein 2-like [Cicer arietinum][more]
gi|388505942|gb|AFK41037.1|7.5e-1363.51unknown [Medicago truncatula][more]
gi|922382319|ref|XP_013461387.1|2.2e-1263.01glycolipid transfer protein (GLTP) family protein [Medicago truncatula][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014830Glycolipid_transfer_prot_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0017089glycolipid transporter activity
GO:0051861glycolipid binding
Vocabulary: Biological Process
TermDefinition
GO:0046836glycolipid transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046836 glycolipid transport
cellular_component GO:0005737 cytoplasm
molecular_function GO:0051861 glycolipid binding
molecular_function GO:0017089 glycolipid transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G025450.1CmoCh04G025450.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014830Glycolipid transfer protein domainGENE3DG3DSA:1.10.3520.10coord: 11..64
score: 5.3
IPR014830Glycolipid transfer protein domainPFAMPF08718GLTPcoord: 29..64
score: 6.
IPR014830Glycolipid transfer protein domainunknownSSF110004Glycolipid transfer protein, GLTPcoord: 24..64
score: 4.9
NoneNo IPR availablePANTHERPTHR10219GLYCOLIPID TRANSFER PROTEIN-RELATEDcoord: 1..64
score: 6.1
NoneNo IPR availablePANTHERPTHR10219:SF34GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MXL8coord: 1..64
score: 6.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G025450Silver-seed gourdcarcmoB1121
CmoCh04G025450Cucumber (Chinese Long) v3cmocucB0902
CmoCh04G025450Cucumber (Chinese Long) v3cmocucB0911
CmoCh04G025450Watermelon (97103) v2cmowmbB760
CmoCh04G025450Watermelon (97103) v2cmowmbB770
CmoCh04G025450Wax gourdcmowgoB0865
CmoCh04G025450Cucurbita moschata (Rifu)cmocmoB029
CmoCh04G025450Cucurbita moschata (Rifu)cmocmoB262
CmoCh04G025450Cucurbita moschata (Rifu)cmocmoB367
CmoCh04G025450Cucumber (Gy14) v1cgycmoB0128
CmoCh04G025450Cucumber (Gy14) v1cgycmoB0137
CmoCh04G025450Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G025450Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G025450Wild cucumber (PI 183967)cmocpiB771
CmoCh04G025450Cucumber (Chinese Long) v2cmocuB762
CmoCh04G025450Cucumber (Chinese Long) v2cmocuB771
CmoCh04G025450Melon (DHL92) v3.5.1cmomeB672
CmoCh04G025450Watermelon (Charleston Gray)cmowcgB605
CmoCh04G025450Watermelon (Charleston Gray)cmowcgB680
CmoCh04G025450Watermelon (97103) v1cmowmB661
CmoCh04G025450Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G025450Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G025450Cucurbita pepo (Zucchini)cmocpeB708
CmoCh04G025450Bottle gourd (USVL1VR-Ls)cmolsiB643
CmoCh04G025450Bottle gourd (USVL1VR-Ls)cmolsiB697
CmoCh04G025450Cucumber (Gy14) v2cgybcmoB819
CmoCh04G025450Cucumber (Gy14) v2cgybcmoB950
CmoCh04G025450Melon (DHL92) v3.6.1cmomedB760
CmoCh04G025450Silver-seed gourdcarcmoB0094