CmoCh04G025280 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G025280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	F-box/LRR-repeat protein, putative
Location	Cmo_Chr04 : 18589206 .. 18590644 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTTATCGGACAATACTGTAATCATTTGCAGTCTGTAAATCTAGGATGGTGTGAGAATGTGAGTGATGTGGGTGTGATGAGTTTGGCGTATGGATGTCCTGATCTCAGAAGCTTAGATTTGTGTGGCTGTGTCCTAATTACAGGTACATCTCTGGATGAACTGATCAGAGGTGGTTTTTGTTTGGTTGAGTATAATACCTGTGTGATTTATGATGTCTTTCTGGAGGCTTTATCAATGAAATTTGAAGCTTTAGTGTATTACAGATGTCGACTAGTCGAATCGCTCCTTTTTCATGGCCTACAAAGAGGAGTATTGTTAGCCTCGAATATCCTTCACTTACTTCTACTTCTGATTTTGTGAGATCCCACATCTATTGGAGAGGAGACTGAAGCATTTCTTATAAGGGTGTGGAAACCTCTCCCTAACAGACGGGTTTTAAAACCGTGATGCTGACAGTAATACGTAACAGGCCAAAGTGGACAATATCTGCTAATGGTGGGCTTTGACTGTTACAAATGGTATTAGAGTCAGACACTTGGTGGTGTGCCAGCGAGGATGCTAGTCCCCAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACATTTCTTAAAAGAGTGTAAAAACTTCTCTCTAGTAGACACATTTTAAAACCGTGAGGCTGACGACGATAAGTAACGGGCCAAAGCAAACAATAACTGCTAGCGCGATGTGCTTGAACTGCTATAGATTGTTAGCCGTTATTGCCAAGCAAATAGGCTCACGAAGTTGATAGATTGACCAAAATCACGACTTCTTTGCTTCTTTTGGATTTGGATGTCTGTTGGACTCTTTTTTCATACCTTTGTATATCTTTTTCATTTCTCTCCGTTGCTTTTCATAGTTGGATCTGTTTATGTGATCAGATGAGCTGCCTCATCAGAAACTTCTTTTGAGTGTAAATTACGCGGTTGTTTTGTTCTTCACTCGAACTGTTGTTGAACTATTTTATGGCTAATGGAAACAATGGCTATTACATGTAGCTGAATAATGTTGATCGTTTTGCCTCATCTGCAGATAATAGTGTGATTGCTTTGGCAAATATGTGCCCTCATCTGAGGTCCCTTGGCCTCTACTACTGTCAGAACATAACAGACAGAGCTATGTACTCTTTGGCCCATAGCATAAAGAACAAGCCTACAAAATGGGCACCTGGGAAATGCAAGAACGATCACGATGGACTTCGAACACTTAACATTAGTCAATGCACAGCTCTTACTCCCCCCGCCGTCCAGGCAGTTTGTGATTCGTTTCCAGCGCTTCACACCTGCTCGGGTCGCCATTCTCTCATCATGAGTGGCTGTCTAAATTTGATGTCTGTGCATTGTGCTTGTGCAGTCCAAGCTCACCGCACTGCTGCTTTTCATCATCCGGCTCATTGA

mRNA sequence

ATGCAGGTTATCGGACAATACTGTAATCATTTGCAGTCTGTAAATCTAGGATGGTGTGAGAATGTGAGTGATGTGGGTGTGATGAGTTTGGCGTATGGATGTCCTGATCTCAGAAGCTTAGATTTGTGTGGCTGTGTCCTAATTACAGATAATAGTGTGATTGCTTTGGCAAATATGTGCCCTCATCTGAGGTCCCTTGGCCTCTACTACTGTCAGAACATAACAGACAGAGCTATGTACTCTTTGGCCCATAGCATAAAGAACAAGCCTACAAAATGGGCACCTGGGAAATGCAAGAACGATCACGATGGACTTCGAACACTTAACATTAGTCAATGCACAGCTCTTACTCCCCCCGCCGTCCAGGCAGTTTGTGATTCGTTTCCAGCGCTTCACACCTGCTCGGGTCGCCATTCTCTCATCATGAGTGGCTGTCTAAATTTGATGTCTGTGCATTGTGCTTGTGCAGTCCAAGCTCACCGCACTGCTGCTTTTCATCATCCGGCTCATTGA

Coding sequence (CDS)

ATGCAGGTTATCGGACAATACTGTAATCATTTGCAGTCTGTAAATCTAGGATGGTGTGAGAATGTGAGTGATGTGGGTGTGATGAGTTTGGCGTATGGATGTCCTGATCTCAGAAGCTTAGATTTGTGTGGCTGTGTCCTAATTACAGATAATAGTGTGATTGCTTTGGCAAATATGTGCCCTCATCTGAGGTCCCTTGGCCTCTACTACTGTCAGAACATAACAGACAGAGCTATGTACTCTTTGGCCCATAGCATAAAGAACAAGCCTACAAAATGGGCACCTGGGAAATGCAAGAACGATCACGATGGACTTCGAACACTTAACATTAGTCAATGCACAGCTCTTACTCCCCCCGCCGTCCAGGCAGTTTGTGATTCGTTTCCAGCGCTTCACACCTGCTCGGGTCGCCATTCTCTCATCATGAGTGGCTGTCTAAATTTGATGTCTGTGCATTGTGCTTGTGCAGTCCAAGCTCACCGCACTGCTGCTTTTCATCATCCGGCTCATTGA

Homology

[Close]

BLAST of CmoCh04G025280 vs. Swiss-Prot
Match: SKP2A_ARATH (F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.9e-72
Identity = 131/173 (75.72%), Postives = 147/173 (84.97%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           ++ IG  CN +QS+NLGWCEN+SD GVMSLAYGCPDLR+LDLCGCVLITD SV+ALA+ C
Sbjct: 188 LEAIGNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALADWC 247

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKCKNDHDGLRTLNISQCTALTP 120
            HLRSLGLYYC+NITDRAMYSLA S +KNKP  W +  K K D +GLR+LNISQCTALTP
Sbjct: 248 VHLRSLGLYYCRNITDRAMYSLAQSGVKNKPGSWKSVKKGKYDEEGLRSLNISQCTALTP 307

Query: 121 PAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH 171
            AVQAVCDSFPALHTCSGRHSL+MSGCLNL +VHCAC +QAHR   A  HPAH
Sbjct: 308 SAVQAVCDSFPALHTCSGRHSLVMSGCLNLTTVHCACILQAHRAHNAVPHPAH 360

[Close]

BLAST of CmoCh04G025280 vs. Swiss-Prot
Match: SKP2B_ARATH (F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.9e-72
Identity = 132/173 (76.30%), Postives = 146/173 (84.39%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +Q IG+ CN LQS+NLGWCEN+SD GVMSLAYGCPDLR+LDLC CVLITD SV+ALAN C
Sbjct: 188 LQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRC 247

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKCKNDHDGLRTLNISQCTALTP 120
            HLRSLGLYYC+NITDRAMYSLA S +KNK   W A  K K D +GLR+LNISQCT LTP
Sbjct: 248 IHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEMWRAVKKGKFDEEGLRSLNISQCTYLTP 307

Query: 121 PAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH 171
            AVQAVCD+FPALHTCSGRHSL+MSGCLNL SVHCAC +QAHRT   + HPAH
Sbjct: 308 SAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSVHCACILQAHRTHTVYPHPAH 360

[Close]

BLAST of CmoCh04G025280 vs. Swiss-Prot
Match: FBXL2_BOVIN (F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-13
Identity = 50/152 (32.89%), Postives = 74/152 (48.68%), Query Frame = 1


Query: 4   IGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHL 63
           I  YC+ L S+NL  C  V+D GV+ L  GCP L++L L GC  +TD S+ ALA  CP L
Sbjct: 203 IQNYCHELVSLNLQSCSRVTDDGVVQLCRGCPRLQALCLSGCGSLTDASLTALALNCPRL 262

Query: 64  RSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPPAVQA 123
           + L    C ++TD     LA               +N HD L  +++ +C  +T   +  
Sbjct: 263 QILEAARCSHLTDAGFTLLA---------------RNCHD-LEKMDLEECILITDRTLTQ 322

Query: 124 VCDSFPALHTCSGRHSLIMS--GCLNLMSVHC 154
           +    P L   S  H  +++  G L+L +  C
Sbjct: 323 LSIHCPKLQALSLSHCELITDDGILHLSNSPC 338

[Close]

BLAST of CmoCh04G025280 vs. Swiss-Prot
Match: FBXL2_PONAB (F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-12
Identity = 44/145 (30.34%), Postives = 70/145 (48.28%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +  +G  C  LQ +    C +++D G   LA  C +L  +DL  C+LITD+++I L+  C
Sbjct: 252 LTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHC 311

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPPA 120
           P L++L L +C+ ITD  +  L++S            C   H+ LR L +  C  +T  A
Sbjct: 312 PKLQALSLSHCELITDDGILHLSNS-----------TC--GHERLRVLELDNCLLITDVA 371

Query: 121 VQAVCDSFPALHTCSGRHSLIMSGC 146
           ++        L  C G   L +  C
Sbjct: 372 LE-------HLENCRGLERLELYDC 376

[Close]

BLAST of CmoCh04G025280 vs. Swiss-Prot
Match: FBXL2_HUMAN (F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-12
Identity = 44/145 (30.34%), Postives = 70/145 (48.28%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +  +G  C  LQ +    C +++D G   LA  C +L  +DL  C+LITD+++I L+  C
Sbjct: 252 LTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHC 311

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPPA 120
           P L++L L +C+ ITD  +  L++S            C   H+ LR L +  C  +T  A
Sbjct: 312 PKLQALSLSHCELITDDGILHLSNS-----------TC--GHERLRVLELDNCLLITDVA 371

Query: 121 VQAVCDSFPALHTCSGRHSLIMSGC 146
           ++        L  C G   L +  C
Sbjct: 372 LE-------HLENCRGLERLELYDC 376

[Close]

BLAST of CmoCh04G025280 vs. TrEMBL
Match: A0A0A0KFD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G344280 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 5.1e-86
Identity = 157/172 (91.28%), Postives = 161/172 (93.60%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +Q IGQYCNHLQSVNLGWCENV+DVGVMSLAYGCPDLR LDLCGCVLITD+SVIALANMC
Sbjct: 205 LQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGCPDLRILDLCGCVLITDDSVIALANMC 264

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPP 120
           PHLRSLGLYYCQNITDRAMYSLAHS IKNKPTKW  GK KND DGLRTLNISQCTALTPP
Sbjct: 265 PHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPP 324

Query: 121 AVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTA-AFHHPAH 171
           AVQAVCDSFPALHTCSGRHSLIMSGCLNL+SVHCACAVQAHR A AF H AH
Sbjct: 325 AVQAVCDSFPALHTCSGRHSLIMSGCLNLISVHCACAVQAHRAATAFLHSAH 376

[Close]

BLAST of CmoCh04G025280 vs. TrEMBL
Match: W9QQB2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021870 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.7e-76
Identity = 137/170 (80.59%), Postives = 150/170 (88.24%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +Q IG+YCN LQS+NLGWCENVSD GVM LAYGCPDLR+LDLCGCVLITD+SVIALAN C
Sbjct: 209 LQAIGRYCNQLQSLNLGWCENVSDAGVMCLAYGCPDLRTLDLCGCVLITDDSVIALANRC 268

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPP 120
            HLRSLGLYYCQNITDRAMYSLAHS ++NKP  W   K +ND DGLRTLNISQCTALTP 
Sbjct: 269 AHLRSLGLYYCQNITDRAMYSLAHSRVRNKPAMWESVKARNDEDGLRTLNISQCTALTPS 328

Query: 121 AVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPA 170
           AVQAVCD+FP+LHTCSGRHSLI+SGCLNL SVHCACAVQAHRT +   P+
Sbjct: 329 AVQAVCDTFPSLHTCSGRHSLIISGCLNLTSVHCACAVQAHRTPSVLPPS 378

[Close]

BLAST of CmoCh04G025280 vs. TrEMBL
Match: M5VP20_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005269mg PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.9e-75
Identity = 140/173 (80.92%), Postives = 153/173 (88.44%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +Q IG+YC+ LQ +NLGWCE+VSDVGVMSLAYGCPDLR++DLCGC+ ITD+SVIALAN C
Sbjct: 207 LQAIGRYCSQLQCLNLGWCEDVSDVGVMSLAYGCPDLRTVDLCGCLQITDDSVIALANKC 266

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTK-WAPGKCKNDHDGLRTLNISQCTALTP 120
           PHLRSLGLYYCQNITDRAMYSLA S ++NKP   W   K KND +GL+TLNISQCTALTP
Sbjct: 267 PHLRSLGLYYCQNITDRAMYSLAQSLVRNKPAAVWESRKPKNDEEGLKTLNISQCTALTP 326

Query: 121 PAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTA-AFHHPAH 171
            AVQAVCDSFPALHTCSGRHSLIMSGCLNL SVHCACAVQAHRTA AF H AH
Sbjct: 327 SAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAVQAHRTASAFPHSAH 379

[Close]

BLAST of CmoCh04G025280 vs. TrEMBL
Match: M5VPX7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005269mg PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.9e-75
Identity = 140/173 (80.92%), Postives = 153/173 (88.44%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +Q IG+YC+ LQ +NLGWCE+VSDVGVMSLAYGCPDLR++DLCGC+ ITD+SVIALAN C
Sbjct: 297 LQAIGRYCSQLQCLNLGWCEDVSDVGVMSLAYGCPDLRTVDLCGCLQITDDSVIALANKC 356

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTK-WAPGKCKNDHDGLRTLNISQCTALTP 120
           PHLRSLGLYYCQNITDRAMYSLA S ++NKP   W   K KND +GL+TLNISQCTALTP
Sbjct: 357 PHLRSLGLYYCQNITDRAMYSLAQSLVRNKPAAVWESRKPKNDEEGLKTLNISQCTALTP 416

Query: 121 PAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTA-AFHHPAH 171
            AVQAVCDSFPALHTCSGRHSLIMSGCLNL SVHCACAVQAHRTA AF H AH
Sbjct: 417 SAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAVQAHRTASAFPHSAH 469

[Close]

BLAST of CmoCh04G025280 vs. TrEMBL
Match: B9GTP8_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0002s07540g PE=4 SV=2)

HSP 1 Score: 281.6 bits (719), Expect = 6.5e-73
Identity = 132/172 (76.74%), Postives = 150/172 (87.21%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +Q IG+ C+ LQS+NLGWCENVSDVGVMSLAYGCPD+R+LDLCGCV ITD+SVIALAN C
Sbjct: 206 LQAIGRNCSQLQSLNLGWCENVSDVGVMSLAYGCPDIRTLDLCGCVCITDDSVIALANRC 265

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPP 120
           PHLRSL LYYC+NITDRAMYSL H+ +KNKP  W   K + D +GL++LNISQCTA+TPP
Sbjct: 266 PHLRSLCLYYCRNITDRAMYSLVHNRVKNKPAMWESMKGRYDEEGLKSLNISQCTAITPP 325

Query: 121 AVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTA-AFHHPAH 171
           AVQA+CDSFPALHTCSGRHSL+MSGC NL SVHCACAVQAH TA +  HPAH
Sbjct: 326 AVQALCDSFPALHTCSGRHSLVMSGCWNLTSVHCACAVQAHHTASSIPHPAH 377

[Close]

BLAST of CmoCh04G025280 vs. TAIR10
Match: AT1G21410.1 (AT1G21410.1 F-box/RNI-like superfamily protein)

HSP 1 Score: 271.2 bits (692), Expect = 4.4e-73
Identity = 131/173 (75.72%), Postives = 147/173 (84.97%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           ++ IG  CN +QS+NLGWCEN+SD GVMSLAYGCPDLR+LDLCGCVLITD SV+ALA+ C
Sbjct: 188 LEAIGNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALADWC 247

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKCKNDHDGLRTLNISQCTALTP 120
            HLRSLGLYYC+NITDRAMYSLA S +KNKP  W +  K K D +GLR+LNISQCTALTP
Sbjct: 248 VHLRSLGLYYCRNITDRAMYSLAQSGVKNKPGSWKSVKKGKYDEEGLRSLNISQCTALTP 307

Query: 121 PAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH 171
            AVQAVCDSFPALHTCSGRHSL+MSGCLNL +VHCAC +QAHR   A  HPAH
Sbjct: 308 SAVQAVCDSFPALHTCSGRHSLVMSGCLNLTTVHCACILQAHRAHNAVPHPAH 360

[Close]

BLAST of CmoCh04G025280 vs. TAIR10
Match: AT1G77000.1 (AT1G77000.1 RNI-like superfamily protein)

HSP 1 Score: 271.2 bits (692), Expect = 4.4e-73
Identity = 132/173 (76.30%), Postives = 146/173 (84.39%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +Q IG+ CN LQS+NLGWCEN+SD GVMSLAYGCPDLR+LDLC CVLITD SV+ALAN C
Sbjct: 188 LQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRC 247

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKCKNDHDGLRTLNISQCTALTP 120
            HLRSLGLYYC+NITDRAMYSLA S +KNK   W A  K K D +GLR+LNISQCT LTP
Sbjct: 248 IHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEMWRAVKKGKFDEEGLRSLNISQCTYLTP 307

Query: 121 PAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH 171
            AVQAVCD+FPALHTCSGRHSL+MSGCLNL SVHCAC +QAHRT   + HPAH
Sbjct: 308 SAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSVHCACILQAHRTHTVYPHPAH 360

[Close]

BLAST of CmoCh04G025280 vs. TAIR10
Match: AT5G23340.1 (AT5G23340.1 RNI-like superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-15
Identity = 48/157 (30.57%), Postives = 76/157 (48.41%), Query Frame = 1


Query: 4   IGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHL 63
           IG+  + LQ +++ +C  +SD G+ ++A GC DLR+L L GC  ITD S+ +L+  C  L
Sbjct: 119 IGRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKSLSERCRDL 178

Query: 64  RSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKNDHD------------GLRTLNIS 123
            +LGL  C NITD  +  L    + K       KC N  D             L+TL + 
Sbjct: 179 EALGLQGCTNITDSGLADLVKGCR-KIKSLDINKCSNVGDAGVSSVAKACASSLKTLKLL 238

Query: 124 QCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNL 149
            C  +   ++ ++         C    +LI+ GC ++
Sbjct: 239 DCYKVGNESISSLA------QFCKNLETLIIGGCRDI 268

[Close]

BLAST of CmoCh04G025280 vs. TAIR10
Match: AT5G01720.1 (AT5G01720.1 RNI-like superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1


Query: 8   CNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLG 67
           C  L S+ LG C N++D G+  +  GC +LR LDL   V ITD  +  +A  C HL ++ 
Sbjct: 430 CLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQGCIHLETIN 489

Query: 68  LYYCQNITDRAMYSLA 84
           + YCQ+ITD+++ SL+
Sbjct: 490 ISYCQDITDKSLVSLS 505

[Close]

BLAST of CmoCh04G025280 vs. TAIR10
Match: AT4G15475.1 (AT4G15475.1 F-box/RNI-like superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-11
Identity = 41/126 (32.54%), Postives = 58/126 (46.03%), Query Frame = 1


Query: 4   IGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHL 63
           IG+ C+ LQ +N+  C  +SD G+ ++A GCP L  LD+     I D  +  L   CP L
Sbjct: 471 IGKGCS-LQQLNVSGCNQISDAGITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPML 530

Query: 64  RSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPPAVQA 123
           + L L +C +ITD  +  L              KCK     L T ++  C  +T   V  
Sbjct: 531 KDLVLSHCHHITDNGLNHLVQ------------KCKL----LETCHMVYCPGITSAGVAT 579

Query: 124 VCDSFP 130
           V  S P
Sbjct: 591 VVSSCP 579

[Close]

BLAST of CmoCh04G025280 vs. NCBI nr
Match: gi|659081905|ref|XP_008441569.1| (PREDICTED: F-box protein SKP2A isoform X1 [Cucumis melo])

HSP 1 Score: 327.0 bits (837), Expect = 1.9e-86
Identity = 157/172 (91.28%), Postives = 162/172 (94.19%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +Q IGQYCNHLQSVNLGWCENV+DVGVMSLAYGCPDLR+LDLCGCVLITD+SVIALANMC
Sbjct: 205 LQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGCPDLRTLDLCGCVLITDDSVIALANMC 264

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPP 120
           PHLRSLGLYYCQNITDRAMYSLAHS IKNKPTKW  GK KND DGLRTLNISQCTALTPP
Sbjct: 265 PHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPP 324

Query: 121 AVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHR-TAAFHHPAH 171
           AVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHR + AF H AH
Sbjct: 325 AVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRASTAFPHSAH 376

[Close]

BLAST of CmoCh04G025280 vs. NCBI nr
Match: gi|659081907|ref|XP_008441570.1| (PREDICTED: F-box protein SKP2A isoform X2 [Cucumis melo])

HSP 1 Score: 327.0 bits (837), Expect = 1.9e-86
Identity = 157/172 (91.28%), Postives = 162/172 (94.19%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +Q IGQYCNHLQSVNLGWCENV+DVGVMSLAYGCPDLR+LDLCGCVLITD+SVIALANMC
Sbjct: 148 LQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGCPDLRTLDLCGCVLITDDSVIALANMC 207

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPP 120
           PHLRSLGLYYCQNITDRAMYSLAHS IKNKPTKW  GK KND DGLRTLNISQCTALTPP
Sbjct: 208 PHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPP 267

Query: 121 AVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHR-TAAFHHPAH 171
           AVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHR + AF H AH
Sbjct: 268 AVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRASTAFPHSAH 319

[Close]

BLAST of CmoCh04G025280 vs. NCBI nr
Match: gi|449453019|ref|XP_004144256.1| (PREDICTED: F-box protein SKP2A isoform X1 [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 7.3e-86
Identity = 157/172 (91.28%), Postives = 161/172 (93.60%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +Q IGQYCNHLQSVNLGWCENV+DVGVMSLAYGCPDLR LDLCGCVLITD+SVIALANMC
Sbjct: 205 LQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGCPDLRILDLCGCVLITDDSVIALANMC 264

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPP 120
           PHLRSLGLYYCQNITDRAMYSLAHS IKNKPTKW  GK KND DGLRTLNISQCTALTPP
Sbjct: 265 PHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPP 324

Query: 121 AVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTA-AFHHPAH 171
           AVQAVCDSFPALHTCSGRHSLIMSGCLNL+SVHCACAVQAHR A AF H AH
Sbjct: 325 AVQAVCDSFPALHTCSGRHSLIMSGCLNLISVHCACAVQAHRAATAFLHSAH 376

[Close]

BLAST of CmoCh04G025280 vs. NCBI nr
Match: gi|778714957|ref|XP_011657314.1| (PREDICTED: F-box protein SKP2A isoform X2 [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 7.3e-86
Identity = 157/172 (91.28%), Postives = 161/172 (93.60%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +Q IGQYCNHLQSVNLGWCENV+DVGVMSLAYGCPDLR LDLCGCVLITD+SVIALANMC
Sbjct: 148 LQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGCPDLRILDLCGCVLITDDSVIALANMC 207

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPP 120
           PHLRSLGLYYCQNITDRAMYSLAHS IKNKPTKW  GK KND DGLRTLNISQCTALTPP
Sbjct: 208 PHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPP 267

Query: 121 AVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTA-AFHHPAH 171
           AVQAVCDSFPALHTCSGRHSLIMSGCLNL+SVHCACAVQAHR A AF H AH
Sbjct: 268 AVQAVCDSFPALHTCSGRHSLIMSGCLNLISVHCACAVQAHRAATAFLHSAH 319

[Close]

BLAST of CmoCh04G025280 vs. NCBI nr
Match: gi|703072646|ref|XP_010089338.1| (hypothetical protein L484_021870 [Morus notabilis])

HSP 1 Score: 292.4 bits (747), Expect = 5.3e-76
Identity = 137/170 (80.59%), Postives = 150/170 (88.24%), Query Frame = 1


Query: 1   MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMC 60
           +Q IG+YCN LQS+NLGWCENVSD GVM LAYGCPDLR+LDLCGCVLITD+SVIALAN C
Sbjct: 209 LQAIGRYCNQLQSLNLGWCENVSDAGVMCLAYGCPDLRTLDLCGCVLITDDSVIALANRC 268

Query: 61  PHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPP 120
            HLRSLGLYYCQNITDRAMYSLAHS ++NKP  W   K +ND DGLRTLNISQCTALTP 
Sbjct: 269 AHLRSLGLYYCQNITDRAMYSLAHSRVRNKPAMWESVKARNDEDGLRTLNISQCTALTPS 328

Query: 121 AVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPA 170
           AVQAVCD+FP+LHTCSGRHSLI+SGCLNL SVHCACAVQAHRT +   P+
Sbjct: 329 AVQAVCDTFPSLHTCSGRHSLIISGCLNLTSVHCACAVQAHRTPSVLPPS 378

The following BLAST results are available for this feature:

BLAST of CmoCh04G025280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKP2A_ARATH	7.9e-72	75.72	F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1	[more]
SKP2B_ARATH	7.9e-72	76.30	F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1	[more]
FBXL2_BOVIN	6.3e-13	32.89	F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1	[more]
FBXL2_PONAB	2.4e-12	30.34	F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1	[more]
FBXL2_HUMAN	2.4e-12	30.34	F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3	[more]

BLAST of CmoCh04G025280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFD6_CUCSA	5.1e-86	91.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G344280 PE=4 SV=1	[more]
W9QQB2_9ROSA	3.7e-76	80.59	Uncharacterized protein OS=Morus notabilis GN=L484_021870 PE=4 SV=1	[more]
M5VP20_PRUPE	6.9e-75	80.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005269mg PE=4 SV=1	[more]
M5VPX7_PRUPE	6.9e-75	80.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005269mg PE=4 SV=1	[more]
B9GTP8_POPTR	6.5e-73	76.74	F-box family protein OS=Populus trichocarpa GN=POPTR_0002s07540g PE=4 SV=2	[more]

BLAST of CmoCh04G025280 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21410.1	4.4e-73	75.72	F-box/RNI-like superfamily protein	[more]
AT1G77000.1	4.4e-73	76.30	RNI-like superfamily protein	[more]
AT5G23340.1	5.5e-15	30.57	RNI-like superfamily protein	[more]
AT5G01720.1	1.5e-12	42.11	RNI-like superfamily protein	[more]
AT4G15475.1	3.7e-11	32.54	F-box/RNI-like superfamily protein	[more]

BLAST of CmoCh04G025280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081905\|ref\|XP_008441569.1\|	1.9e-86	91.28	PREDICTED: F-box protein SKP2A isoform X1 [Cucumis melo]	[more]
gi\|659081907\|ref\|XP_008441570.1\|	1.9e-86	91.28	PREDICTED: F-box protein SKP2A isoform X2 [Cucumis melo]	[more]
gi\|449453019\|ref\|XP_004144256.1\|	7.3e-86	91.28	PREDICTED: F-box protein SKP2A isoform X1 [Cucumis sativus]	[more]
gi\|778714957\|ref\|XP_011657314.1\|	7.3e-86	91.28	PREDICTED: F-box protein SKP2A isoform X2 [Cucumis sativus]	[more]
gi\|703072646\|ref\|XP_010089338.1\|	5.3e-76	80.59	hypothetical protein L484_021870 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt
IPR006553	Leu-rich_rpt_Cys-con_subtyp

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G025280.1	CmoCh04G025280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 60..83 score: 0.31coord: 34..57 score: 0.2coord: 7..31 score: 1.
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 34..59 score: 9.1E-7coord: 98..127 score: 8.3coord: 60..85 score: 5.7E-8coord: 8..33 score: 3.
None	No IPR available	PANTHER	PTHR24006	FAMILY NOT NAMED	coord: 1..85 score: 3.0
None	No IPR available	unknown	SSF52047	RNI-like	coord: 4..148 score: 3.14

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G025280	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G025280	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G025280	Cucurbita pepo (Zucchini)	cmocpeB708
CmoCh04G025280	Bottle gourd (USVL1VR-Ls)	cmolsiB697
CmoCh04G025280	Cucumber (Gy14) v2	cgybcmoB819
CmoCh04G025280	Melon (DHL92) v3.6.1	cmomedB760
CmoCh04G025280	Silver-seed gourd	carcmoB0094
CmoCh04G025280	Silver-seed gourd	carcmoB1121
CmoCh04G025280	Cucumber (Chinese Long) v3	cmocucB0902
CmoCh04G025280	Watermelon (97103) v2	cmowmbB760
CmoCh04G025280	Wax gourd	cmowgoB0865
CmoCh04G025280	Cucurbita moschata (Rifu)	cmocmoB029
CmoCh04G025280	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh04G025280	Cucurbita moschata (Rifu)	cmocmoB367
CmoCh04G025280	Cucumber (Gy14) v1	cgycmoB0128
CmoCh04G025280	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G025280	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G025280	Wild cucumber (PI 183967)	cmocpiB771
CmoCh04G025280	Cucumber (Chinese Long) v2	cmocuB762
CmoCh04G025280	Melon (DHL92) v3.5.1	cmomeB672
CmoCh04G025280	Watermelon (Charleston Gray)	cmowcgB680
CmoCh04G025280	Watermelon (97103) v1	cmowmB661