CmoCh04G025270 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G025270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	F-box family protein
Location	Cmo_Chr04 : 18587840 .. 18589156 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGTAAAGACATTTTGAGGACAGAGGACGTGAAGATGTGGTTTGAGAGAGTAATGAATCGACTTTGGTGCTAAAGGAGTTATAATATGGACGGTGGGGTGCTAGCCGGATGGAAGGACATTCCTATGGAGCTCCTCTTGCAAATTATATCTCTTGTTGATGATCGAACTGTTATTGTGGCTTCAGGCGTGTGTCGTGGATGGAGGGACGCTATTTGCTTTGGACTCCTCCATCTCTCTCTCTCATGGTACTTGTTCTTATCTGCCTTGAATGCCTTTCTATTTCTTTTGAATCTTTTATCGTTTAGTGTGATATCCCACGTTGGTTGGGGAGGAGAATGAAACACCCTTATAAAGGGTTGGGGAGGAGAACGAACCACCCTTATAAAGGGTTGGGGAGGAGAACAAAACACCCTTATAAAGGGTGTGGAAACCTTTCACTAGCGCACGTTTTAAAGTCTTGAGGGGAAGCCAGAAAGGGAAAACCCAACGGTTACATTTAGCCTCTAATGTGACTATAAGCATATTATCTTGTATCGTTACAGGCTTCTGACTTGTTGGGTGTCTGGTTGATATTGATTTTTCTTCTTCTGTTATAGTTTCATATGATATGATGAATTTGGTGTGTTTCTTCTGATTTTATTAGTACTTTACTTATGAACTATGAGTTCTTAGATTACGTATTTCCTCGCGTAATCGCAAGAGTTTCGACGAAGAATTGGTGGGATTGGAAGGGAGATAGATGATGTGATGAGTTATGTGTTTCAAAATCTTGCAAGAAAAAGGGATGAAACACCTAATAAGCTCAAGCACATCATTAATCATAACACATATCTTAGTGATCACCTTGGAACTTGTTAGAAGTGTTTTATTAGTGAATTTGTTTGATCAAGATGAATGCCTGGCAAGGCAGATGGCTAATTGCCTATTGGTGTCAACTTCTTATTCAGGTGCAAGAACATGAACAACTTGGTCCTATCCCTTGTTCCTAAATTTGCAAAACTGCAAACTTTAATCTTGCGCCAAGATAAACCCCAGCTTGCAGATGATGCTATTGATACCATTGCTAGTTACTGCCGCGATCTGCAGGTCCTCGACCTGAGAAAAAGTTTCAAGCTCAGTGATCGTTCCTTGTATGCTCTGGCTCATGGTTGCCGTGATCTTAAAAAGCTTAATATTAGTGGCTGTACTTCATTTAGTGACACTGCATTGGCTTATCTAGCCAGTTACTGCAGAAAGCTAAAAGTTCTTAATCTTTGTGGCTGCGTTAAGGCTACATCGGACACTGCATTGCAGGTACAATGTACAGATTAA

mRNA sequence

ATGGTTGGTAAAGACATTTTGAGGACAGAGGACGTGAAGATGTGGTGCAAGAACATGAACAACTTGGTCCTATCCCTTGTTCCTAAATTTGCAAAACTGCAAACTTTAATCTTGCGCCAAGATAAACCCCAGCTTGCAGATGATGCTATTGATACCATTGCTAGTTACTGCCGCGATCTGCAGGTCCTCGACCTGAGAAAAAGTTTCAAGCTCAGTGATCGTTCCTTGTATGCTCTGGCTCATGGTTGCCGTGATCTTAAAAAGCTTAATATTAGTGGCTGTACTTCATTTAGTGACACTGCATTGGCTTATCTAGCCAGTTACTGCAGAAAGCTAAAAGTTCTTAATCTTTGTGGCTGCGTTAAGGCTACATCGGACACTGCATTGCAGGTACAATGTACAGATTAA

Coding sequence (CDS)

ATGGTTGGTAAAGACATTTTGAGGACAGAGGACGTGAAGATGTGGTGCAAGAACATGAACAACTTGGTCCTATCCCTTGTTCCTAAATTTGCAAAACTGCAAACTTTAATCTTGCGCCAAGATAAACCCCAGCTTGCAGATGATGCTATTGATACCATTGCTAGTTACTGCCGCGATCTGCAGGTCCTCGACCTGAGAAAAAGTTTCAAGCTCAGTGATCGTTCCTTGTATGCTCTGGCTCATGGTTGCCGTGATCTTAAAAAGCTTAATATTAGTGGCTGTACTTCATTTAGTGACACTGCATTGGCTTATCTAGCCAGTTACTGCAGAAAGCTAAAAGTTCTTAATCTTTGTGGCTGCGTTAAGGCTACATCGGACACTGCATTGCAGGTACAATGTACAGATTAA

Homology

[Close]

BLAST of CmoCh04G025270 vs. Swiss-Prot
Match: SKP2A_ARATH (F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.5e-45
Identity = 87/117 (74.36%), Postives = 101/117 (86.32%), Query Frame = 1


Query: 15  WCKN-MNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSD 74
           WC N MN+LVLSLVPKF KLQTL LRQDKPQL D+A++ IA++C +LQ LDL KS K++D
Sbjct: 73  WCNNNMNSLVLSLVPKFVKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKSLKITD 132

Query: 75  RSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
           RSLYALAHGC DL KLN+SGCTSFSDTA+AYL  +CRKLKVLNLCGCVKA +D AL+
Sbjct: 133 RSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALE 189

[Close]

BLAST of CmoCh04G025270 vs. Swiss-Prot
Match: SKP2B_ARATH (F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-42
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 1


Query: 15  WCK-NMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSD 74
           WCK NMN+LVLSL PKF KLQTL+LRQDKPQL D+A++ IA++C +LQ LDL KS K++D
Sbjct: 73  WCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSSKITD 132

Query: 75  RSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
            SLY+LA GC +L KLN+SGCTSFSDTALA+L  +CRKLK+LNLCGCV+A SD  LQ
Sbjct: 133 HSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQ 189

[Close]

BLAST of CmoCh04G025270 vs. Swiss-Prot
Match: FBXL2_PONAB (F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-09
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 45  LADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAY 104
           + + ++  I+  CR+L+ L+L    +++   + AL  GCR LK L + GCT   D AL +
Sbjct: 143 ITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKH 202

Query: 105 LASYCRKLKVLNLCGCVKATSDTALQV 132
           + +YC +L  LNL  C + T +  +Q+
Sbjct: 203 IQNYCHELVSLNLQSCSRITDEGVVQI 229

[Close]

BLAST of CmoCh04G025270 vs. Swiss-Prot
Match: FBXL2_MOUSE (F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-09
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 45  LADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAY 104
           + + ++  I+  CR+L+ L+L    +++   + AL  GCR LK L + GCT   D AL +
Sbjct: 143 VTNSSLKGISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDEALKH 202

Query: 105 LASYCRKLKVLNLCGCVKATSDTALQV 132
           + ++C +L  LNL  C + T D  +Q+
Sbjct: 203 IQNHCHELVSLNLQSCSRITDDGVVQI 229

[Close]

BLAST of CmoCh04G025270 vs. Swiss-Prot
Match: FBXL2_HUMAN (F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3)

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-09
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 45  LADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAY 104
           + + ++  I+  CR+L+ L+L    +++   + AL  GCR LK L + GCT   D AL +
Sbjct: 143 ITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKH 202

Query: 105 LASYCRKLKVLNLCGCVKATSDTALQV 132
           + +YC +L  LNL  C + T +  +Q+
Sbjct: 203 IQNYCHELVSLNLQSCSRITDEGVVQI 229

[Close]

BLAST of CmoCh04G025270 vs. TrEMBL
Match: A0A0A0KFD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G344280 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 8.5e-52
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1


Query: 15  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSD 74
           WC KNMNNLVLSL PKFA+LQ LILRQDKPQL DDA++TIASYC DLQVLDL KSFKLSD
Sbjct: 90  WCQKNMNNLVLSLAPKFARLQNLILRQDKPQLGDDAVETIASYCHDLQVLDLSKSFKLSD 149

Query: 75  RSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
            SLYALAHGCRDLK+LNISGCT+FSDTALAYLASYCRKLKVLNLCGCVKA SDTALQ
Sbjct: 150 LSLYALAHGCRDLKRLNISGCTAFSDTALAYLASYCRKLKVLNLCGCVKAASDTALQ 206

[Close]

BLAST of CmoCh04G025270 vs. TrEMBL
Match: B7FJG1_MEDTR (F-box SKP2A-like protein OS=Medicago truncatula GN=MTR_3g088895 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-48
Identity = 96/117 (82.05%), Postives = 107/117 (91.45%), Query Frame = 1


Query: 15  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSD 74
           WC KNMNNLVLSLVPKFAKLQTLILRQDKPQL D+ + TIA++C DLQ+LDL KSFKL+D
Sbjct: 84  WCNKNMNNLVLSLVPKFAKLQTLILRQDKPQLDDNVVGTIANFCHDLQILDLSKSFKLTD 143

Query: 75  RSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
           RSLYA+AHGCRDL KLNISGC++FSD ALAYLA +CRKLKVLNLCGCV+A SDTALQ
Sbjct: 144 RSLYAIAHGCRDLTKLNISGCSAFSDNALAYLAGFCRKLKVLNLCGCVRAASDTALQ 200

[Close]

BLAST of CmoCh04G025270 vs. TrEMBL
Match: A0A151U1T6_CAJCA (F-box/LRR-repeat protein 5 OS=Cajanus cajan GN=KK1_005875 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 9.8e-48
Identity = 96/117 (82.05%), Postives = 108/117 (92.31%), Query Frame = 1


Query: 15  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSD 74
           WC KNMNNLVLSL PKF KLQTLILRQDKPQL D+A++TIA++C DLQ+LDL KSFKL+D
Sbjct: 88  WCSKNMNNLVLSLAPKFTKLQTLILRQDKPQLEDNAVETIANFCHDLQILDLSKSFKLTD 147

Query: 75  RSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
           RSLYA+A GCRDL KLNISGC++FSD+ALAYLAS+CRKLKVLNLCGCVKA SDTALQ
Sbjct: 148 RSLYAVALGCRDLTKLNISGCSAFSDSALAYLASFCRKLKVLNLCGCVKAASDTALQ 204

[Close]

BLAST of CmoCh04G025270 vs. TrEMBL
Match: B7FL57_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-47
Identity = 95/117 (81.20%), Postives = 106/117 (90.60%), Query Frame = 1


Query: 15  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSD 74
           WC KNMNNLVLSLVPKFAKLQTLILRQDKPQL D+ + TIA++C DLQ+LDL KSFKL+D
Sbjct: 84  WCNKNMNNLVLSLVPKFAKLQTLILRQDKPQLDDNVVGTIANFCHDLQILDLSKSFKLTD 143

Query: 75  RSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
            SLYA+AHGCRDL KLNISGC++FSD ALAYLA +CRKLKVLNLCGCV+A SDTALQ
Sbjct: 144 HSLYAIAHGCRDLTKLNISGCSAFSDNALAYLAGFCRKLKVLNLCGCVRAASDTALQ 200

[Close]

BLAST of CmoCh04G025270 vs. TrEMBL
Match: A0A0B2R0X3_GLYSO (F-box protein SKP2B OS=Glycine soja GN=glysoja_048760 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-47
Identity = 96/117 (82.05%), Postives = 107/117 (91.45%), Query Frame = 1


Query: 15  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSD 74
           WC KNMNNLVLSL PKF KLQTLILRQDKPQL D+A++TIA++C DLQ+LDL KSFKL+D
Sbjct: 87  WCSKNMNNLVLSLSPKFTKLQTLILRQDKPQLEDNAVETIANFCHDLQILDLSKSFKLTD 146

Query: 75  RSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
           RSLYA+A GCRDL KLNISGC++FSD ALAYLAS+CRKLKVLNLCGCVKA SDTALQ
Sbjct: 147 RSLYAVALGCRDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVKAASDTALQ 203

[Close]

BLAST of CmoCh04G025270 vs. TAIR10
Match: AT1G21410.1 (AT1G21410.1 F-box/RNI-like superfamily protein)

HSP 1 Score: 181.4 bits (459), Expect = 3.7e-46
Identity = 87/117 (74.36%), Postives = 101/117 (86.32%), Query Frame = 1


Query: 15  WCKN-MNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSD 74
           WC N MN+LVLSLVPKF KLQTL LRQDKPQL D+A++ IA++C +LQ LDL KS K++D
Sbjct: 73  WCNNNMNSLVLSLVPKFVKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKSLKITD 132

Query: 75  RSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
           RSLYALAHGC DL KLN+SGCTSFSDTA+AYL  +CRKLKVLNLCGCVKA +D AL+
Sbjct: 133 RSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALE 189

[Close]

BLAST of CmoCh04G025270 vs. TAIR10
Match: AT1G77000.1 (AT1G77000.1 RNI-like superfamily protein)

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-43
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = 1


Query: 15  WCK-NMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSD 74
           WCK NMN+LVLSL PKF KLQTL+LRQDKPQL D+A++ IA++C +LQ LDL KS K++D
Sbjct: 73  WCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSSKITD 132

Query: 75  RSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
            SLY+LA GC +L KLN+SGCTSFSDTALA+L  +CRKLK+LNLCGCV+A SD  LQ
Sbjct: 133 HSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQ 189

[Close]

BLAST of CmoCh04G025270 vs. TAIR10
Match: AT5G23340.1 (AT5G23340.1 RNI-like superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 8.5e-11
Identity = 34/105 (32.38%), Postives = 57/105 (54.29%), Query Frame = 1


Query: 16  CKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRS 75
           CK + +  L+ + +   L   +      +L+D  +  +A  C DL+ L L     ++D S
Sbjct: 108 CKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDES 167

Query: 76  LYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGC 121
           L +L+  CRDL+ L + GCT+ +D+ LA L   CRK+K L++  C
Sbjct: 168 LKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKC 212

[Close]

BLAST of CmoCh04G025270 vs. TAIR10
Match: AT3G58530.1 (AT3G58530.1 RNI-like superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-10
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 44  QLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALA 103
           +++D+ I+ I S C  L+V  +  + +++D  +  L   CR +  LN+SGC S +D ++ 
Sbjct: 123 KISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQ 182

Query: 104 YLASYCRKLKVLNLCGCVKATSDTALQV 132
            +A     L+ LN+  CVK T D  LQV
Sbjct: 183 LVAESYPDLESLNITRCVKITDDGLLQV 210

[Close]

BLAST of CmoCh04G025270 vs. TAIR10
Match: AT5G27920.1 (AT5G27920.1 F-box family protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 27/93 (29.03%), Postives = 48/93 (51.61%), Query Frame = 1


Query: 41  DKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDT 100
           D   ++D ++ +++S CR L  + L +   ++D  + +LA  C +LK LN++ C   +D 
Sbjct: 308 DGAHVSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMISLARNCLNLKTLNLACCGFVTDV 367

Query: 101 ALAYLASYCRKLKVLNLCGCVKATSDTALQVQC 134
           A++ +A  CR L  L L  C   T      + C
Sbjct: 368 AISAVAQSCRNLGTLKLESCHLITEKGLQSLGC 400

[Close]

BLAST of CmoCh04G025270 vs. NCBI nr
Match: gi|449453019|ref|XP_004144256.1| (PREDICTED: F-box protein SKP2A isoform X1 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-51
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1


Query: 15  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSD 74
           WC KNMNNLVLSL PKFA+LQ LILRQDKPQL DDA++TIASYC DLQVLDL KSFKLSD
Sbjct: 90  WCQKNMNNLVLSLAPKFARLQNLILRQDKPQLGDDAVETIASYCHDLQVLDLSKSFKLSD 149

Query: 75  RSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
            SLYALAHGCRDLK+LNISGCT+FSDTALAYLASYCRKLKVLNLCGCVKA SDTALQ
Sbjct: 150 LSLYALAHGCRDLKRLNISGCTAFSDTALAYLASYCRKLKVLNLCGCVKAASDTALQ 206

[Close]

BLAST of CmoCh04G025270 vs. NCBI nr
Match: gi|778714957|ref|XP_011657314.1| (PREDICTED: F-box protein SKP2A isoform X2 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.4e-50
Identity = 102/114 (89.47%), Postives = 107/114 (93.86%), Query Frame = 1


Query: 17  KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSL 76
           KNMNNLVLSL PKFA+LQ LILRQDKPQL DDA++TIASYC DLQVLDL KSFKLSD SL
Sbjct: 36  KNMNNLVLSLAPKFARLQNLILRQDKPQLGDDAVETIASYCHDLQVLDLSKSFKLSDLSL 95

Query: 77  YALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
           YALAHGCRDLK+LNISGCT+FSDTALAYLASYCRKLKVLNLCGCVKA SDTALQ
Sbjct: 96  YALAHGCRDLKRLNISGCTAFSDTALAYLASYCRKLKVLNLCGCVKAASDTALQ 149

[Close]

BLAST of CmoCh04G025270 vs. NCBI nr
Match: gi|659081905|ref|XP_008441569.1| (PREDICTED: F-box protein SKP2A isoform X1 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-49
Identity = 101/117 (86.32%), Postives = 106/117 (90.60%), Query Frame = 1


Query: 15  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSD 74
           WC KNMNNLVLSL PKF KLQ LILRQDKPQL+D A++TIASYC DLQVLDL KSFKLSD
Sbjct: 90  WCKKNMNNLVLSLAPKFGKLQNLILRQDKPQLSDHAVETIASYCHDLQVLDLSKSFKLSD 149

Query: 75  RSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
            SLYALAHGC DLK+LNISGCT+FSDTALAYLASYCRKLK LNLCGCVKA SDTALQ
Sbjct: 150 LSLYALAHGCHDLKRLNISGCTAFSDTALAYLASYCRKLKFLNLCGCVKAASDTALQ 206

[Close]

BLAST of CmoCh04G025270 vs. NCBI nr
Match: gi|659081909|ref|XP_008441571.1| (PREDICTED: F-box protein SKP2A isoform X3 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-49
Identity = 101/117 (86.32%), Postives = 106/117 (90.60%), Query Frame = 1


Query: 15  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSD 74
           WC KNMNNLVLSL PKF KLQ LILRQDKPQL+D A++TIASYC DLQVLDL KSFKLSD
Sbjct: 90  WCKKNMNNLVLSLAPKFGKLQNLILRQDKPQLSDHAVETIASYCHDLQVLDLSKSFKLSD 149

Query: 75  RSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
            SLYALAHGC DLK+LNISGCT+FSDTALAYLASYCRKLK LNLCGCVKA SDTALQ
Sbjct: 150 LSLYALAHGCHDLKRLNISGCTAFSDTALAYLASYCRKLKFLNLCGCVKAASDTALQ 206

[Close]

BLAST of CmoCh04G025270 vs. NCBI nr
Match: gi|659081907|ref|XP_008441570.1| (PREDICTED: F-box protein SKP2A isoform X2 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 1.3e-48
Identity = 99/114 (86.84%), Postives = 104/114 (91.23%), Query Frame = 1


Query: 17  KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSL 76
           KNMNNLVLSL PKF KLQ LILRQDKPQL+D A++TIASYC DLQVLDL KSFKLSD SL
Sbjct: 36  KNMNNLVLSLAPKFGKLQNLILRQDKPQLSDHAVETIASYCHDLQVLDLSKSFKLSDLSL 95

Query: 77  YALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQ 131
           YALAHGC DLK+LNISGCT+FSDTALAYLASYCRKLK LNLCGCVKA SDTALQ
Sbjct: 96  YALAHGCHDLKRLNISGCTAFSDTALAYLASYCRKLKFLNLCGCVKAASDTALQ 149

The following BLAST results are available for this feature:

BLAST of CmoCh04G025270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKP2A_ARATH	6.5e-45	74.36	F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1	[more]
SKP2B_ARATH	2.3e-42	70.09	F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1	[more]
FBXL2_PONAB	5.8e-09	33.33	F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1	[more]
FBXL2_MOUSE	5.8e-09	33.33	F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1	[more]
FBXL2_HUMAN	5.8e-09	33.33	F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3	[more]

BLAST of CmoCh04G025270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFD6_CUCSA	8.5e-52	88.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G344280 PE=4 SV=1	[more]
B7FJG1_MEDTR	3.4e-48	82.05	F-box SKP2A-like protein OS=Medicago truncatula GN=MTR_3g088895 PE=2 SV=1	[more]
A0A151U1T6_CAJCA	9.8e-48	82.05	F-box/LRR-repeat protein 5 OS=Cajanus cajan GN=KK1_005875 PE=4 SV=1	[more]
B7FL57_MEDTR	1.3e-47	81.20	Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
A0A0B2R0X3_GLYSO	2.2e-47	82.05	F-box protein SKP2B OS=Glycine soja GN=glysoja_048760 PE=4 SV=1	[more]

BLAST of CmoCh04G025270 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21410.1	3.7e-46	74.36	F-box/RNI-like superfamily protein	[more]
AT1G77000.1	1.3e-43	70.09	RNI-like superfamily protein	[more]
AT5G23340.1	8.5e-11	32.38	RNI-like superfamily protein	[more]
AT3G58530.1	5.5e-10	34.09	RNI-like superfamily protein	[more]
AT5G27920.1	2.0e-07	29.03	F-box family protein	[more]

BLAST of CmoCh04G025270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453019\|ref\|XP_004144256.1\|	1.2e-51	88.89	PREDICTED: F-box protein SKP2A isoform X1 [Cucumis sativus]	[more]
gi\|778714957\|ref\|XP_011657314.1\|	1.4e-50	89.47	PREDICTED: F-box protein SKP2A isoform X2 [Cucumis sativus]	[more]
gi\|659081905\|ref\|XP_008441569.1\|	1.1e-49	86.32	PREDICTED: F-box protein SKP2A isoform X1 [Cucumis melo]	[more]
gi\|659081909\|ref\|XP_008441571.1\|	1.1e-49	86.32	PREDICTED: F-box protein SKP2A isoform X3 [Cucumis melo]	[more]
gi\|659081907\|ref\|XP_008441570.1\|	1.3e-48	86.84	PREDICTED: F-box protein SKP2A isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006553	Leu-rich_rpt_Cys-con_subtyp

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G025270.1	CmoCh04G025270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 57..82 score: 0.0099coord: 83..108 score: 1.
None	No IPR available	PANTHER	PTHR24006	FAMILY NOT NAMED	coord: 20..120 score: 1.8
None	No IPR available	unknown	SSF52047	RNI-like	coord: 15..127 score: 6.87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G025270	Cucsa.077200	Cucumber (Gy14) v1	cgycmoB0128
CmoCh04G025270	CmaCh15G006350	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G025270	CmaCh04G024130	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G025270	Cla013875	Watermelon (97103) v1	cmowmB661
CmoCh04G025270	Csa6G344280	Cucumber (Chinese Long) v2	cmocuB762
CmoCh04G025270	MELO3C008429	Melon (DHL92) v3.5.1	cmomeB672
CmoCh04G025270	ClCG08G006300	Watermelon (Charleston Gray)	cmowcgB680
CmoCh04G025270	CSPI06G18240	Wild cucumber (PI 183967)	cmocpiB771
CmoCh04G025270	Lsi08G005100	Bottle gourd (USVL1VR-Ls)	cmolsiB697
CmoCh04G025270	Cp4.1LG13g04340	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G025270	MELO3C008429.2	Melon (DHL92) v3.6.1	cmomedB760
CmoCh04G025270	CsaV3_6G031140	Cucumber (Chinese Long) v3	cmocucB0902
CmoCh04G025270	Cla97C08G149090	Watermelon (97103) v2	cmowmbB760
CmoCh04G025270	Bhi04G001437	Wax gourd	cmowgoB0865
CmoCh04G025270	CsGy6G017710	Cucumber (Gy14) v2	cgybcmoB819
CmoCh04G025270	Carg01569	Silver-seed gourd	carcmoB1121
CmoCh04G025270	Carg15761	Silver-seed gourd	carcmoB0094

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G025270	CmoCh15G006450	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G025270	Cucurbita moschata (Rifu)	cmocmoB029
CmoCh04G025270	Cucurbita moschata (Rifu)	cmocmoB367
CmoCh04G025270	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G025270	Cucurbita pepo (Zucchini)	cmocpeB708