CmoCh04G025160 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G025160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 18534124 .. 18534654 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGTTGCATTAGCAAATGCAAACCCAAGACCATCAAACGACAACCTCGTTTTGATCTCAACAACCTTGTCCGACACAAGCTCGCTGTCATTCCTCAACCGCCTCCATTAACATCAGCAGCACCTCCTCCTCTCTCTCTTAATAACAAAATCTCTCCTTATCCTCCTTCCCCTTCTTCCATCTCTTCTTCAACTACAACAATCCCCTCTTTCTCACCTTCAACTTCACGTTCCCTAATTTTCTCCGATGACTACTTGGGGTCGTCTTATAAGCATAACTCTCCCCTCCTTCGCGTCAATTCCCTTAAACCTAACCCCTTTTCGTCGCCCATGAAGCCCGTTTCCCCGGTGATCCGCCATTTTCCACAGCAACCGTCTCCCCAAAGGATGTCGAGATCAAAAACCCTAAAGAGAGCCCGGCCTTCACCTCCGTCGCCGGTTCGGCAAAAGAGCTTGAGGAAGGAGGAAGACCTCCTTCGCCGTCGCCAAGTAGGCGGTCGAACGGAGAGAAATGCCGAGTGGCTCTGA

mRNA sequence

ATGGGATGTTGCATTAGCAAATGCAAACCCAAGACCATCAAACGACAACCTCGTTTTGATCTCAACAACCTTGTCCGACACAAGCTCGCTGTCATTCCTCAACCGCCTCCATTAACATCAGCAGCACCTCCTCCTCTCTCTCTTAATAACAAAATCTCTCCTTATCCTCCTTCCCCTTCTTCCATCTCTTCTTCAACTACAACAATCCCCTCTTTCTCACCTTCAACTTCACGTTCCCTAATTTTCTCCGATGACTACTTGGGGTCGTCTTATAAGCATAACTCTCCCCTCCTTCGCGTCAATTCCCTTAAACCTAACCCCTTTTCGTCGCCCATGAAGCCCGTTTCCCCGGTGATCCGCCATTTTCCACAGCAACCGTCTCCCCAAAGGATGTCGAGATCAAAAACCCTAAAGAGAGCCCGGCCTTCACCTCCGTCGCCGGTTCGGCAAAAGAGCTTGAGGAAGGAGGAAGACCTCCTTCGCCGTCGCCAAGTAGGCGGTCGAACGGAGAGAAATGCCGAGTGGCTCTGA

Coding sequence (CDS)

ATGGGATGTTGCATTAGCAAATGCAAACCCAAGACCATCAAACGACAACCTCGTTTTGATCTCAACAACCTTGTCCGACACAAGCTCGCTGTCATTCCTCAACCGCCTCCATTAACATCAGCAGCACCTCCTCCTCTCTCTCTTAATAACAAAATCTCTCCTTATCCTCCTTCCCCTTCTTCCATCTCTTCTTCAACTACAACAATCCCCTCTTTCTCACCTTCAACTTCACGTTCCCTAATTTTCTCCGATGACTACTTGGGGTCGTCTTATAAGCATAACTCTCCCCTCCTTCGCGTCAATTCCCTTAAACCTAACCCCTTTTCGTCGCCCATGAAGCCCGTTTCCCCGGTGATCCGCCATTTTCCACAGCAACCGTCTCCCCAAAGGATGTCGAGATCAAAAACCCTAAAGAGAGCCCGGCCTTCACCTCCGTCGCCGGTTCGGCAAAAGAGCTTGAGGAAGGAGGAAGACCTCCTTCGCCGTCGCCAAGTAGGCGGTCGAACGGAGAGAAATGCCGAGTGGCTCTGA

Homology

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BLAST of CmoCh04G025160 vs. TrEMBL
Match: A0A0A0KIF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G354870 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-27
Identity = 95/176 (53.98%), Postives = 113/176 (64.20%), Query Frame = 1


Query: 1   MGCCISKCKPKTIKRQPRFDLNNLV-RHKLAVIPQP-PPL----TSAAPPPLSLNNKISP 60
           MG CISKCKPK +K+ P FD NNLV + KL VIPQP  PL    T++A P LSL+NKISP
Sbjct: 1   MGSCISKCKPKMMKQPPLFDFNNLVVQDKLVVIPQPLSPLLTTKTTSATPSLSLHNKISP 60

Query: 61  YPPSPSSISSS------------TTTIPSFSP-STSRSLIFSDDYLGSSYKHNSPLLRVN 120
           YPPSPS  SSS            ++T  SFS  S+S S I S  Y  S Y  N  L  +N
Sbjct: 61  YPPSPSPSSSSISSFTCLSSNTPSSTNTSFSTASSSPSPISSHHYFPSPYNQNPHLFPIN 120

Query: 121 SLKPNPFSSPMKPVSPVI-RHFPQQPSPQRMSRSKTLKRARPSPPSPVRQKSLRKE 157
           SLK + F  P+KP+SP++ RH    PSPQR+SRS   KR RP+ PSP+RQKS RKE
Sbjct: 121 SLKAHAFRPPVKPISPLLLRH----PSPQRVSRSIPQKRPRPASPSPIRQKSFRKE 172

[Close]

BLAST of CmoCh04G025160 vs. TrEMBL
Match: M5XHQ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021954mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 75/184 (40.76%), Postives = 97/184 (52.72%), Query Frame = 1


Query: 1   MGCCISKCKPKTIKRQPRFDLNNLVRHKLAVIPQPPPLTSAAPPPLSLNNKISPYPPSPS 60
           MG CISKC+P    R+   D  N V+ KL +   P  L   A PP+S +NKISP PPSPS
Sbjct: 1   MGSCISKCRP----RRHMIDELNHVQDKLVISQAPSRL---AAPPISASNKISPSPPSPS 60

Query: 61  ----SISSSTTTIPSFSPSTSRSLI-----------------FSDDYLGSSYKHNSPLLR 120
               S SS T T  + +  TS SL                  FS+++L S YK N  ++R
Sbjct: 61  NSTSSASSFTCTTNTSTSHTSSSLTSTLSSASSVLSSKIDRSFSNEFLWSCYKENPHVVR 120

Query: 121 VNSLKPNPFSS---PMKPVSPVIRHFPQQPSPQRMSRSKT-LKRARPSPPSPV-RQKSLR 159
           +NSLK   FSS   P KP+ P      +QP+ +  + S T  KR R S P+P+ RQKS R
Sbjct: 121 INSLKEASFSSSSLPQKPLLPAAVK-KKQPNLKNANASVTPQKRVRSSSPTPLTRQKSFR 176

[Close]

BLAST of CmoCh04G025160 vs. TrEMBL
Match: B9S2R2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0560750 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-10
Identity = 74/212 (34.91%), Postives = 107/212 (50.47%), Query Frame = 1


Query: 1   MGCCISKCKPKTIKRQPRFDLNNLVRHKLAVIPQPPPLTSAAPP--PLSL-NNKISPYPP 60
           MGCCISKC+PK       +  ++ V+ KL +  Q P  TS   P  P SL NNKISP PP
Sbjct: 1   MGCCISKCRPKKHYAIQVYS-DHSVQDKLVISQQAPKSTSKITPIVPSSLSNNKISPSPP 60

Query: 61  SPSSISSSTTTIPSFSPS-------------------------TSRSLIFSDDYLGSSYK 120
           SP+  +SST++I SF+ S                         TS+   FS+++L S  K
Sbjct: 61  SPT--TSSTSSISSFTCSNSTNTSGSSTISSCSSLSSGSSSILTSKDRSFSNEFLWSCVK 120

Query: 121 HNSPLLRVNSLKPNPFSSPMKPVSPVIRHFPQQP-----------SPQRMSRSKTLKRAR 173
            N  ++R+NS+K   +S  + P + ++R F   P           SPQ+++ S   KR R
Sbjct: 121 ENPHVIRINSIK--EYSQLLVPPNVLVRKFDSSPAKQASLPLKQSSPQKVNASTPQKRVR 180

[Close]

BLAST of CmoCh04G025160 vs. TrEMBL
Match: A9PBA8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07680g PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.8e-09
Identity = 73/187 (39.04%), Postives = 95/187 (50.80%), Query Frame = 1


Query: 1   MGCCISKCKPKTIKRQPRFDLNNLVRHKLAVIPQPPPLTSAAPPPLSLNNKISPYPPSPS 60
           MGCCISKC+PK  KR       N V  KL +     P T   P P+S  NKISP PPSP+
Sbjct: 1   MGCCISKCRPK--KRSFEECHGNNVEDKLVI--SQAPKTPKIPVPVS--NKISPSPPSPT 60

Query: 61  SISSS------------TTTIPSFSPSTSRSLI-------FSDDYLGSSYKHNSPLLRVN 120
           + +SS            TTTI S S  +S S I       FS+++L S  K N  ++R+N
Sbjct: 61  TSTSSSGSAFTCCTNSNTTTISSCSSLSSGSSILNSKDRSFSNEFLWSCVKENPHIIRIN 120

Query: 121 SLK--------PNPFSSPM-KPVSPVIRHFPQQPSPQRMSRSKTLKRARP-SPPSPVRQK 159
           S+K        PN +S  +  P   V+    QQ  PQ+++ S   KR R  SP +  RQK
Sbjct: 121 SIKERSQLLASPNVYSRKLGSPAKQVVAPM-QQSIPQKVNTSTPHKRVRSNSPTALTRQK 180

[Close]

BLAST of CmoCh04G025160 vs. TrEMBL
Match: A0A072VB49_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g088735 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 72/172 (41.86%), Postives = 90/172 (52.33%), Query Frame = 1


Query: 1   MGCCISKCKPKTIKRQPRFDLNNLVRHKLAVIPQPPPLTSAAPPPLSLNNKISPYPPSP- 60
           MG CISKC+P       +  LN+  + KL +  QPPP  +     L  +NKISP PPSP 
Sbjct: 1   MGSCISKCRPN------KHSLNHFNKDKLVISHQPPPTPTTL---LHSSNKISPSPPSPT 60

Query: 61  SSISSSTTT-------IPSFSPSTSRSL-----IFSDDYLGSSYKHNSPLL-RVNSL-KP 120
           SSISS T T         SFS + S SL      FS+D+L S YK N  ++ R+NSL KP
Sbjct: 61  SSISSFTCTTSKTISSASSFSSTNSSSLSSKDRSFSNDFLWSCYKENPHIITRINSLTKP 120

Query: 121 NPFSSPMKPVSPVIRHFPQQPSPQRMSRSKTLKRARP-SPPSPVRQKSLRKE 157
            P   P K ++P        P+ Q M +    KR R  SP +  RQKS RKE
Sbjct: 121 TP--QPKKIINP-------SPTKQNMPQ----KRVRSNSPTNLTRQKSFRKE 150

[Close]

BLAST of CmoCh04G025160 vs. NCBI nr
Match: gi|659081967|ref|XP_008441600.1| (PREDICTED: serine/threonine-protein kinase WNK4 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 95/178 (53.37%), Postives = 112/178 (62.92%), Query Frame = 1


Query: 1   MGCCISKCKPKTIKRQPRFDLNNLVRHKLAVIPQP--PPLTS------AAPPPLSLNNKI 60
           MG CISKCKPK +++ P FD NNLV+ KL VIPQP  P LTS      +A P LSL+NKI
Sbjct: 1   MGSCISKCKPKMMRQPPLFDFNNLVQDKLVVIPQPLSPLLTSTATKTTSATPSLSLHNKI 60

Query: 61  SPYPPSPSSISSSTTTIPSFSPSTSRSL-------------IFSDDYLGSSYKHNSPLLR 120
           SPYPPSPS  SSS ++    S +TS S              I S  Y  S Y  N  L R
Sbjct: 61  SPYPPSPSPSSSSISSFTCLSSNTSSSTNTSFSTASSSPSPISSHHYFPSPYNQNPHLFR 120

Query: 121 VNSLKPNPFSSPMKPVSP-VIRHFPQQPSPQRMSRSKTLKRARPSPPSPVRQKSLRKE 157
           +NSLK + F SP+KP+SP V+RH    PSPQR+SRS   KR RP+ PSP+RQKS RKE
Sbjct: 121 INSLKAHAFRSPVKPISPLVVRH----PSPQRVSRSTPQKRLRPASPSPIRQKSFRKE 174

[Close]

BLAST of CmoCh04G025160 vs. NCBI nr
Match: gi|778715012|ref|XP_011657327.1| (PREDICTED: putative protein TPRXL [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 95/176 (53.98%), Postives = 113/176 (64.20%), Query Frame = 1


Query: 1   MGCCISKCKPKTIKRQPRFDLNNLV-RHKLAVIPQP-PPL----TSAAPPPLSLNNKISP 60
           MG CISKCKPK +K+ P FD NNLV + KL VIPQP  PL    T++A P LSL+NKISP
Sbjct: 1   MGSCISKCKPKMMKQPPLFDFNNLVVQDKLVVIPQPLSPLLTTKTTSATPSLSLHNKISP 60

Query: 61  YPPSPSSISSS------------TTTIPSFSP-STSRSLIFSDDYLGSSYKHNSPLLRVN 120
           YPPSPS  SSS            ++T  SFS  S+S S I S  Y  S Y  N  L  +N
Sbjct: 61  YPPSPSPSSSSISSFTCLSSNTPSSTNTSFSTASSSPSPISSHHYFPSPYNQNPHLFPIN 120

Query: 121 SLKPNPFSSPMKPVSPVI-RHFPQQPSPQRMSRSKTLKRARPSPPSPVRQKSLRKE 157
           SLK + F  P+KP+SP++ RH    PSPQR+SRS   KR RP+ PSP+RQKS RKE
Sbjct: 121 SLKAHAFRPPVKPISPLLLRH----PSPQRVSRSIPQKRPRPASPSPIRQKSFRKE 172

[Close]

BLAST of CmoCh04G025160 vs. NCBI nr
Match: gi|694382831|ref|XP_009367404.1| (PREDICTED: uncharacterized protein LOC103957054 [Pyrus x bretschneideri])

HSP 1 Score: 76.6 bits (187), Expect = 4.7e-11
Identity = 75/186 (40.32%), Postives = 101/186 (54.30%), Query Frame = 1


Query: 1   MGCCISKCKPKTIKRQPRFDLNNLVRHKLAVIPQPPPLTSAAPPPLSLNNKISPYPPSPS 60
           MG CISKC PK    Q   + NN V+ KL +I QPPP  +   PP+S +NKISP P SPS
Sbjct: 1   MGSCISKCTPKKHFLQ---EFNN-VQDKL-IISQPPPRITI--PPISASNKISPCPQSPS 60

Query: 61  SISSSTTTIP-----------------SFSPSTSRSLI---FSDDYLGSSYKHNSPLLRV 120
           + +SS ++ P                 S + S S S I   FS+++L S YK N  ++R+
Sbjct: 61  NSTSSASSFPCTTSTSYTSASSLSSALSSASSASSSKIDRSFSNEFLWSCYKENPHVIRI 120

Query: 121 NSLKPNPFSS------PMKPVSPVIRHFPQQPSPQRMSRSKT-LKRARPSPPSPV-RQKS 159
           NS+K   FS       P KPVS  + +    P+P+R + S T  KR R S P+ + RQKS
Sbjct: 121 NSIKDASFSRFSPSALPQKPVSATVVNKKPLPNPKRANVSVTPRKRVRSSSPTSLGRQKS 179

[Close]

BLAST of CmoCh04G025160 vs. NCBI nr
Match: gi|645226748|ref|XP_008220186.1| (PREDICTED: putative protein TPRXL [Prunus mume])

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 75/184 (40.76%), Postives = 98/184 (53.26%), Query Frame = 1


Query: 1   MGCCISKCKPKTIKRQPRFDLNNLVRHKLAVIPQPPPLTSAAPPPLSLNNKISPYPPSPS 60
           MG CISKC+P+   R+   D  N V+ KL +   P  L   A PP+S +NKISP PPSPS
Sbjct: 1   MGSCISKCRPR---RRHMIDELNHVQDKLVISQAPSRL---AAPPISASNKISPSPPSPS 60

Query: 61  ----SISSSTTTIPSFSPSTSRSLI-----------------FSDDYLGSSYKHNSPLLR 120
               S SS T T  + +  TS SL                  FS+++L S YK N  ++R
Sbjct: 61  NSTSSASSFTCTTNTSTSHTSSSLTSSLSSASSVLSSKIDRSFSNEFLWSCYKENPHVVR 120

Query: 121 VNSLKPNPFSS---PMKPVSPVIRHFPQQPSPQRMSRSKT-LKRARPSPPSPV-RQKSLR 159
           +NSLK   FSS   P KP+ P      +QP+ +  + S T  KR R S P+P+ RQKS R
Sbjct: 121 INSLKEASFSSSSLPQKPLLPAAVK-KKQPNLKNTNASVTPQKRVRSSSPTPLTRQKSFR 177

[Close]

BLAST of CmoCh04G025160 vs. NCBI nr
Match: gi|596239463|ref|XP_007224443.1| (hypothetical protein PRUPE_ppa021954mg [Prunus persica])

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-10
Identity = 75/184 (40.76%), Postives = 97/184 (52.72%), Query Frame = 1


Query: 1   MGCCISKCKPKTIKRQPRFDLNNLVRHKLAVIPQPPPLTSAAPPPLSLNNKISPYPPSPS 60
           MG CISKC+P    R+   D  N V+ KL +   P  L   A PP+S +NKISP PPSPS
Sbjct: 1   MGSCISKCRP----RRHMIDELNHVQDKLVISQAPSRL---AAPPISASNKISPSPPSPS 60

Query: 61  ----SISSSTTTIPSFSPSTSRSLI-----------------FSDDYLGSSYKHNSPLLR 120
               S SS T T  + +  TS SL                  FS+++L S YK N  ++R
Sbjct: 61  NSTSSASSFTCTTNTSTSHTSSSLTSTLSSASSVLSSKIDRSFSNEFLWSCYKENPHVVR 120

Query: 121 VNSLKPNPFSS---PMKPVSPVIRHFPQQPSPQRMSRSKT-LKRARPSPPSPV-RQKSLR 159
           +NSLK   FSS   P KP+ P      +QP+ +  + S T  KR R S P+P+ RQKS R
Sbjct: 121 INSLKEASFSSSSLPQKPLLPAAVK-KKQPNLKNANASVTPQKRVRSSSPTPLTRQKSFR 176

The following BLAST results are available for this feature:

BLAST of CmoCh04G025160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G025160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIF4_CUCSA	1.5e-27	53.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G354870 PE=4 SV=1	[more]
M5XHQ0_PRUPE	1.2e-10	40.76	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021954mg PE=4 SV=1	[more]
B9S2R2_RICCO	3.6e-10	34.91	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0560750 PE=4 SV=1	[more]
A9PBA8_POPTR	6.8e-09	39.04	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07680g PE=2 SV=1	[more]
A0A072VB49_MEDTR	2.6e-08	41.86	Uncharacterized protein OS=Medicago truncatula GN=MTR_3g088735 PE=4 SV=1	[more]

BLAST of CmoCh04G025160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G025160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081967\|ref\|XP_008441600.1\|	2.0e-30	53.37	PREDICTED: serine/threonine-protein kinase WNK4 [Cucumis melo]	[more]
gi\|778715012\|ref\|XP_011657327.1\|	2.1e-27	53.98	PREDICTED: putative protein TPRXL [Cucumis sativus]	[more]
gi\|694382831\|ref\|XP_009367404.1\|	4.7e-11	40.32	PREDICTED: uncharacterized protein LOC103957054 [Pyrus x bretschneideri]	[more]
gi\|645226748\|ref\|XP_008220186.1\|	1.0e-10	40.76	PREDICTED: putative protein TPRXL [Prunus mume]	[more]
gi\|596239463\|ref\|XP_007224443.1\|	1.8e-10	40.76	hypothetical protein PRUPE_ppa021954mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G025160.1	CmoCh04G025160.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G025160	Watermelon (97103) v2	cmowmbB760
CmoCh04G025160	Wax gourd	cmowgoB0865
CmoCh04G025160	Cucurbita moschata (Rifu)	cmocmoB029
CmoCh04G025160	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh04G025160	Cucurbita moschata (Rifu)	cmocmoB367
CmoCh04G025160	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G025160	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G025160	Wild cucumber (PI 183967)	cmocpiB771
CmoCh04G025160	Cucumber (Chinese Long) v2	cmocuB762
CmoCh04G025160	Melon (DHL92) v3.5.1	cmomeB672
CmoCh04G025160	Watermelon (Charleston Gray)	cmowcgB680
CmoCh04G025160	Watermelon (97103) v1	cmowmB661
CmoCh04G025160	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G025160	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G025160	Cucurbita pepo (Zucchini)	cmocpeB708
CmoCh04G025160	Bottle gourd (USVL1VR-Ls)	cmolsiB697
CmoCh04G025160	Cucumber (Gy14) v2	cgybcmoB819
CmoCh04G025160	Melon (DHL92) v3.6.1	cmomedB760
CmoCh04G025160	Silver-seed gourd	carcmoB0094
CmoCh04G025160	Silver-seed gourd	carcmoB1121
CmoCh04G025160	Cucumber (Chinese Long) v3	cmocucB0902