CmoCh04G023640 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G023640
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionGag-pol polyprotein
LocationCmo_Chr04 : 17650231 .. 17650614 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAACACGATGGGTGATTTCCAAATCATTGGAGGAATTAAGAAACTCAACAACAACAACTACAACACGTGGGCAACATGCATGATGTCCTATTTACAAGGACAGGATCTTTGGGAGATCGTTGGCGGGTGCGAAACTACGTCGCCAGAGGATGATTCCAACGGCGCCTTGAGCAAATGGAGAATCAAAGCAGGAAAAGTAATGTTTGCCATGAAGACCACAATCGGAGAAGAGATGTTAGAACATATTTGGGATGACAAGACACCGAAAGAAGCATGGGACACGTTCTTGATGTTGTTCTCAAAGAAGAACGATACGAGGCTACAACTTCTGGAGAATGAGTTGTTGTCAATTACACAACGTGACATGACGATTGCTTAG

mRNA sequence

ATGGCCAACACGATGGGTGATTTCCAAATCATTGGAGGAATTAAGAAACTCAACAACAACAACTACAACACGTGGGCAACATGCATGATGTCCTATTTACAAGGACAGGATCTTTGGGAGATCGTTGGCGGGTGCGAAACTACGTCGCCAGAGGATGATTCCAACGGCGCCTTGAGCAAATGGAGAATCAAAGCAGGAAAAGTAATGTTTGCCATGAAGACCACAATCGGAGAAGAGATGTTAGAACATATTTGGGATGACAAGACACCGAAAGAAGCATGGGACACGTTCTTGATGTTGTTCTCAAAGAAGAACGATACGAGGCTACAACTTCTGGAGAATGAGTTGTTGTCAATTACACAACGTGACATGACGATTGCTTAG

Coding sequence (CDS)

ATGGCCAACACGATGGGTGATTTCCAAATCATTGGAGGAATTAAGAAACTCAACAACAACAACTACAACACGTGGGCAACATGCATGATGTCCTATTTACAAGGACAGGATCTTTGGGAGATCGTTGGCGGGTGCGAAACTACGTCGCCAGAGGATGATTCCAACGGCGCCTTGAGCAAATGGAGAATCAAAGCAGGAAAAGTAATGTTTGCCATGAAGACCACAATCGGAGAAGAGATGTTAGAACATATTTGGGATGACAAGACACCGAAAGAAGCATGGGACACGTTCTTGATGTTGTTCTCAAAGAAGAACGATACGAGGCTACAACTTCTGGAGAATGAGTTGTTGTCAATTACACAACGTGACATGACGATTGCTTAG
Homology
[Close]
BLAST of CmoCh04G023640 vs. TrEMBL
Match: F6HRY1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0871g00010 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.4e-48
Identity = 94/124 (75.81%), Postives = 108/124 (87.10%), Query Frame = 1 

Query: 5   MGDFQIIGGIKKLNNNNYNTWATCMMSYLQGQDLWEIVGGCETTSPE-DDSNGALSKWRI 64
           MGD ++IGGIKKLNN NYNTW+TCMMSY+QGQDLWE+V G E T PE +D+NG L KW+I
Sbjct: 1   MGDLKVIGGIKKLNNQNYNTWSTCMMSYMQGQDLWEVVNGSEITQPEVEDANGILRKWKI 60

Query: 65  KAGKVMFAMKTTIGEEMLEHIWDDKTPKEAWDTFLMLFSKKNDTRLQLLENELLSITQRD 124
           KAGKVMFA+KTTI E++LEHI D KTP EAW+TF  LFSKKNDTRLQLLE+ELLSI QRD
Sbjct: 61  KAGKVMFALKTTIEEDVLEHIRDAKTPYEAWNTFTKLFSKKNDTRLQLLESELLSIVQRD 120

Query: 125 MTIA 128
           +TIA
Sbjct: 121 LTIA 124

[Close]
BLAST of CmoCh04G023640 vs. TrEMBL
Match: A5AKW8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.0e-47
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 1 

Query: 5   MGDFQIIGGIKKLNNNNYNTWATCMMSYLQGQDLWEIVGGCETTSPE-DDSNGALSKWRI 64
           MGD Q+IGGIKKLNN NYNTW+TCMMSY+QGQDLWE+V G E T P+ +D+NG L KW+I
Sbjct: 1   MGDLQVIGGIKKLNNQNYNTWSTCMMSYMQGQDLWEVVNGSEITQPKVEDANGILRKWKI 60

Query: 65  KAGKVMFAMKTTIGEEMLEHIWDDKTPKEAWDTFLMLFSKKNDTRLQLLENELLSITQRD 124
           KAGK MFA+KTTI E++LEHI D KTP EAW+TF  LFSKKNDTRLQLLE+EL S+ QRD
Sbjct: 61  KAGKAMFALKTTIEEDVLEHIRDAKTPYEAWNTFTKLFSKKNDTRLQLLESELFSVAQRD 120

Query: 125 MTIA 128
           +TIA
Sbjct: 121 LTIA 124

[Close]
BLAST of CmoCh04G023640 vs. TrEMBL
Match: F6H7C1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00520 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.0e-47
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 1 

Query: 5   MGDFQIIGGIKKLNNNNYNTWATCMMSYLQGQDLWEIVGGCETTSPE-DDSNGALSKWRI 64
           MGD Q+IGGIKKLNN NYNTW+TCMMSY+QGQDLWE+V G E T P+ +D+NG L KW+I
Sbjct: 1   MGDLQVIGGIKKLNNQNYNTWSTCMMSYMQGQDLWEVVNGSEITQPKVEDANGILRKWKI 60

Query: 65  KAGKVMFAMKTTIGEEMLEHIWDDKTPKEAWDTFLMLFSKKNDTRLQLLENELLSITQRD 124
           KAGK MFA+KTTI E++LEHI D KTP EAW+TF  LFSKKNDTRLQLLE+EL S+ QRD
Sbjct: 61  KAGKAMFALKTTIEEDVLEHIRDAKTPYEAWNTFTKLFSKKNDTRLQLLESELFSVAQRD 120

Query: 125 MTIA 128
           +TIA
Sbjct: 121 LTIA 124

[Close]
BLAST of CmoCh04G023640 vs. TrEMBL
Match: A5BJX0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003097 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 7.8e-47
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 1 

Query: 5   MGDFQIIGGIKKLNNNNYNTWATCMMSYLQGQDLWEIVGGCETTSPE-DDSNGALSKWRI 64
           MGD Q+IGGIKKLNN NYNTW+TCMMSY+QGQDLWE+V G E T PE +D+NG L KW+I
Sbjct: 1   MGDLQVIGGIKKLNNQNYNTWSTCMMSYMQGQDLWEVVNGSEITQPEAEDANGILRKWKI 60

Query: 65  KAGKVMFAMKTTIGEEMLEHIWDDKTPKEAWDTFLMLFSKKNDTRLQLLENELLSITQRD 124
           K GK MFA+KTTI E++LEHI D  TP EAW+TF  LFSKKNDTRLQLLE++LLS+TQRD
Sbjct: 61  KVGKAMFALKTTIEEDVLEHIRDATTPYEAWNTFTKLFSKKNDTRLQLLESKLLSVTQRD 120

Query: 125 MTIA 128
           +TIA
Sbjct: 121 LTIA 124

[Close]
BLAST of CmoCh04G023640 vs. TrEMBL
Match: F6HLR6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g03370 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.0e-46
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 1 

Query: 5   MGDFQIIGGIKKLNNNNYNTWATCMMSYLQGQDLWEIVGGCETTSPE-DDSNGALSKWRI 64
           MGD Q+IGGIKKLNN NYNTW+TCMMSY+QGQDLW++V G E T PE +D NG L KW+I
Sbjct: 1   MGDLQVIGGIKKLNNQNYNTWSTCMMSYMQGQDLWKVVNGSEITQPEAEDVNGILQKWKI 60

Query: 65  KAGKVMFAMKTTIGEEMLEHIWDDKTPKEAWDTFLMLFSKKNDTRLQLLENELLSITQRD 124
           K GKVMFA+KTTI E++LEHI D KTP EAW+TF  LFSKKNDTRLQLLE++LLS+ QRD
Sbjct: 61  KTGKVMFALKTTIEEDVLEHIRDAKTPYEAWNTFTKLFSKKNDTRLQLLESKLLSVAQRD 120

Query: 125 MTIA 128
           +TIA
Sbjct: 121 LTIA 124

[Close]
BLAST of CmoCh04G023640 vs. NCBI nr
Match: gi|658026120|ref|XP_008348476.1| (PREDICTED: uncharacterized protein LOC103411625 [Malus domestica])

HSP 1 Score: 206.8 bits (525), Expect = 2.2e-50
Identity = 99/124 (79.84%), Postives = 108/124 (87.10%), Query Frame = 1 

Query: 5   MGDFQIIGGIKKLNNNNYNTWATCMMSYLQGQDLWEIVGGCETTSPE-DDSNGALSKWRI 64
           MGD Q++GGIKKLNN NYNTWATCM SYLQGQDLWE+VGG E T P  +D+NG L KW+I
Sbjct: 1   MGDLQVVGGIKKLNNKNYNTWATCMESYLQGQDLWEVVGGGEVTQPATEDANGILRKWKI 60

Query: 65  KAGKVMFAMKTTIGEEMLEHIWDDKTPKEAWDTFLMLFSKKNDTRLQLLENELLSITQRD 124
           KAGK MFA+KTTI EEMLEHI D KTPKEAWDTF+ LFSKKNDTRLQLLENELLS+ QRD
Sbjct: 61  KAGKAMFALKTTIEEEMLEHIRDAKTPKEAWDTFVTLFSKKNDTRLQLLENELLSMAQRD 120

Query: 125 MTIA 128
           MTIA
Sbjct: 121 MTIA 124

[Close]
BLAST of CmoCh04G023640 vs. NCBI nr
Match: gi|657958070|ref|XP_008370540.1| (PREDICTED: uncharacterized protein LOC103434004 [Malus domestica])

HSP 1 Score: 206.8 bits (525), Expect = 2.2e-50
Identity = 99/124 (79.84%), Postives = 108/124 (87.10%), Query Frame = 1 

Query: 5   MGDFQIIGGIKKLNNNNYNTWATCMMSYLQGQDLWEIVGGCETTSPE-DDSNGALSKWRI 64
           MGD Q++GGIKKLNN NYNTWATCM SYLQGQDLWE+VGG E T P  +D+NG L KW+I
Sbjct: 1   MGDLQVVGGIKKLNNKNYNTWATCMESYLQGQDLWEVVGGGEVTQPAAEDANGILRKWKI 60

Query: 65  KAGKVMFAMKTTIGEEMLEHIWDDKTPKEAWDTFLMLFSKKNDTRLQLLENELLSITQRD 124
           KAGK MFA+KTTI EEMLEHI D KTPKEAWDTF+ LFSKKNDTRLQLLENELLS+ QRD
Sbjct: 61  KAGKAMFALKTTIEEEMLEHIRDAKTPKEAWDTFVTLFSKKNDTRLQLLENELLSMVQRD 120

Query: 125 MTIA 128
           MTIA
Sbjct: 121 MTIA 124

[Close]
BLAST of CmoCh04G023640 vs. NCBI nr
Match: gi|657961054|ref|XP_008372112.1| (PREDICTED: uncharacterized protein LOC103435489 [Malus domestica])

HSP 1 Score: 206.5 bits (524), Expect = 2.8e-50
Identity = 99/124 (79.84%), Postives = 108/124 (87.10%), Query Frame = 1 

Query: 5   MGDFQIIGGIKKLNNNNYNTWATCMMSYLQGQDLWEIVGGCETTSPE-DDSNGALSKWRI 64
           MGD Q++GGIKKLNN NYNTWATCM SYLQGQDLWE+VGG E T P  +D+NG L KW+I
Sbjct: 1   MGDLQVLGGIKKLNNKNYNTWATCMXSYLQGQDLWEVVGGGEVTQPAXEDANGILXKWKI 60

Query: 65  KAGKVMFAMKTTIGEEMLEHIWDDKTPKEAWDTFLMLFSKKNDTRLQLLENELLSITQRD 124
           KAGK MFA+KTTI EEMLEHI D KTPKEAWDTF+ LFSKKNDTRLQLLENELLS+ QRD
Sbjct: 61  KAGKXMFALKTTIEEEMLEHIRDAKTPKEAWDTFVTLFSKKNDTRLQLLENELLSMAQRD 120

Query: 125 MTIA 128
           MTIA
Sbjct: 121 MTIA 124

[Close]
BLAST of CmoCh04G023640 vs. NCBI nr
Match: gi|657968686|ref|XP_008376045.1| (PREDICTED: uncharacterized protein LOC103439283 [Malus domestica])

HSP 1 Score: 206.1 bits (523), Expect = 3.7e-50
Identity = 98/124 (79.03%), Postives = 108/124 (87.10%), Query Frame = 1 

Query: 5   MGDFQIIGGIKKLNNNNYNTWATCMMSYLQGQDLWEIVGGCETTSPE-DDSNGALSKWRI 64
           MGD Q++GG+KKLNN NYNTWATCM SYLQGQDLWE+VGG E T P  +D+NG L KW+I
Sbjct: 1   MGDLQVVGGVKKLNNKNYNTWATCMESYLQGQDLWEVVGGGEVTQPAAEDANGILQKWKI 60

Query: 65  KAGKVMFAMKTTIGEEMLEHIWDDKTPKEAWDTFLMLFSKKNDTRLQLLENELLSITQRD 124
           KAGK MFA+KTTI EEMLEHI D KTPKEAWDTF+ LFSKKNDTRLQLLENELLS+ QRD
Sbjct: 61  KAGKSMFALKTTIEEEMLEHIRDAKTPKEAWDTFVTLFSKKNDTRLQLLENELLSMVQRD 120

Query: 125 MTIA 128
           MTIA
Sbjct: 121 MTIA 124

[Close]
BLAST of CmoCh04G023640 vs. NCBI nr
Match: gi|657977767|ref|XP_008380801.1| (PREDICTED: uncharacterized protein LOC103443691 [Malus domestica])

HSP 1 Score: 203.8 bits (517), Expect = 1.8e-49
Identity = 97/124 (78.23%), Postives = 107/124 (86.29%), Query Frame = 1 

Query: 5   MGDFQIIGGIKKLNNNNYNTWATCMMSYLQGQDLWEIVGGCETTSPE-DDSNGALSKWRI 64
           MGD Q++GGIKKLNN NYNTWATCM SYLQGQDLWE+VGG E T P  +D+NG L KW+I
Sbjct: 1   MGDLQVVGGIKKLNNKNYNTWATCMESYLQGQDLWEVVGGGEVTQPTAEDANGILRKWKI 60

Query: 65  KAGKVMFAMKTTIGEEMLEHIWDDKTPKEAWDTFLMLFSKKNDTRLQLLENELLSITQRD 124
           K GK MFA+KTTI EEMLEHI D KTPKEAWDTF+ LFSKKNDTRLQLLEN+LLS+ QRD
Sbjct: 61  KVGKAMFALKTTIEEEMLEHIRDAKTPKEAWDTFVTLFSKKNDTRLQLLENKLLSMAQRD 120

Query: 125 MTIA 128
           MTIA
Sbjct: 121 MTIA 124

The following BLAST results are available for this feature:
BLAST of CmoCh04G023640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G023640 vs. TrEMBL
Match NameE-valueIdentityDescription
F6HRY1_VITVI5.4e-4875.81Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0871g00010 PE=4 SV=... [more]
A5AKW8_VITVI6.0e-4773.39Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027864 PE=4 SV=1[more]
F6H7C1_VITVI6.0e-4773.39Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00520 PE=4 SV=... [more]
A5BJX0_VITVI7.8e-4773.39Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003097 PE=4 SV=1[more]
F6HLR6_VITVI1.0e-4673.39Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g03370 PE=4 SV=... [more]
BLAST of CmoCh04G023640 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G023640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|658026120|ref|XP_008348476.1|2.2e-5079.84PREDICTED: uncharacterized protein LOC103411625 [Malus domestica][more]
gi|657958070|ref|XP_008370540.1|2.2e-5079.84PREDICTED: uncharacterized protein LOC103434004 [Malus domestica][more]
gi|657961054|ref|XP_008372112.1|2.8e-5079.84PREDICTED: uncharacterized protein LOC103435489 [Malus domestica][more]
gi|657968686|ref|XP_008376045.1|3.7e-5079.03PREDICTED: uncharacterized protein LOC103439283 [Malus domestica][more]
gi|657977767|ref|XP_008380801.1|1.8e-4978.23PREDICTED: uncharacterized protein LOC103443691 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025314DUF4219
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G023640.1CmoCh04G023640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025314Domain of unknown function DUF4219PFAMPF13961DUF4219coord: 17..42
score: 1.4
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 16..126
score: 5.9
NoneNo IPR availablePANTHERPTHR11439:SF164SUBFAMILY NOT NAMEDcoord: 16..126
score: 5.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G023640Melon (DHL92) v3.6.1cmomedB707
CmoCh04G023640Melon (DHL92) v3.6.1cmomedB714
CmoCh04G023640Melon (DHL92) v3.6.1cmomedB715
CmoCh04G023640Silver-seed gourdcarcmoB0716
CmoCh04G023640Silver-seed gourdcarcmoB1121
CmoCh04G023640Cucumber (Chinese Long) v3cmocucB0854
CmoCh04G023640Watermelon (97103) v2cmowmbB676
CmoCh04G023640Wax gourdcmowgoB0822
CmoCh04G023640Cucurbita moschata (Rifu)cmocmoB262
CmoCh04G023640Cucumber (Gy14) v1cgycmoB0493
CmoCh04G023640Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G023640Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G023640Wild cucumber (PI 183967)cmocpiB742
CmoCh04G023640Wild cucumber (PI 183967)cmocpiB751
CmoCh04G023640Cucumber (Chinese Long) v2cmocuB722
CmoCh04G023640Melon (DHL92) v3.5.1cmomeB616
CmoCh04G023640Melon (DHL92) v3.5.1cmomeB625
CmoCh04G023640Watermelon (Charleston Gray)cmowcgB636
CmoCh04G023640Watermelon (97103) v1cmowmB707
CmoCh04G023640Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G023640Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G023640Bottle gourd (USVL1VR-Ls)cmolsiB610
CmoCh04G023640Cucumber (Gy14) v2cgybcmoB634