CmoCh04G023520 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G023520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 17481415 .. 17482254 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGTTTCGAGTTTGCTCCCCATTGTTCCTTGCTCTTCTTTTCTCATGTTTGTTCATCCGATATAGTCTATTTTAGTCTTCAAATTATTAGATATCTCTATTTTGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATATTGTTTATCAAATTTTTGCAGTGGCGTTCATGGTACCTCAAGCAGCCCTTTCAGTAGATTGTGTTGATAAGTTGTATGAAGGATGCCTGCCTGAAGACTGCAAGCAGAAGTGTCTAGAAAAGCATCCTGGATCAACATCTCAGTGCGTGGCTGCCCCTCCCGTTCCTTTTACCTACCTTTGTTATTGCTCCTACCATTGCACTAACAACTGA

mRNA sequence

ATGGCCAAGTTTCGAGTTTGCTCCCCATTGTTCCTTGCTCTTCTTTTCTCATTGGCGTTCATGGTACCTCAAGCAGCCCTTTCAGTAGATTGTGTTGATAAGTTGTATGAAGGATGCCTGCCTGAAGACTGCAAGCAGAAGTGTCTAGAAAAGCATCCTGGATCAACATCTCAGTGCGTGGCTGCCCCTCCCGTTCCTTTTACCTACCTTTGTTATTGCTCCTACCATTGCACTAACAACTGA

Coding sequence (CDS)

ATGGCCAAGTTTCGAGTTTGCTCCCCATTGTTCCTTGCTCTTCTTTTCTCATTGGCGTTCATGGTACCTCAAGCAGCCCTTTCAGTAGATTGTGTTGATAAGTTGTATGAAGGATGCCTGCCTGAAGACTGCAAGCAGAAGTGTCTAGAAAAGCATCCTGGATCAACATCTCAGTGCGTGGCTGCCCCTCCCGTTCCTTTTACCTACCTTTGTTATTGCTCCTACCATTGCACTAACAACTGA

Homology

[Close]

BLAST of CmoCh04G023520 vs. TrEMBL
Match: A0A0A0KU45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634350 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-15
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1


Query: 1  MAKFRVCSPLFLAL-LFSLAFMVPQAALSVDCVDKLYEGCLPEDCKQKCLEKHPGSTSQC 60
          MAKF  CS  F+   L S A+++P    +  C  KLY+GCLP+DC QKC +K+P S+S+C
Sbjct: 1  MAKFS-CSLFFIGFFLLSAAWIMPNGVSATKCETKLYDGCLPKDCTQKCSDKYPNSSSEC 60

Query: 61 VAAPPVPFTYLCYCSYHC 78
          VA PP+PF Y CYC Y C
Sbjct: 61 VAVPPIPFHYSCYCFYDC 77

[Close]

BLAST of CmoCh04G023520 vs. TrEMBL
Match: A0A0A0KS76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634340 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-08
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 14 LLFSLAFM-VPQAALSVDCVDKLYE-GCLPEDCKQKCLEKHPG-STSQCVAAPPVPFTYL 73
          LL S+A+M +P+ A +  C DKLY+ GC+ ++CKQ+C  K+P  S+SQC++ PP+PF   
Sbjct: 14 LLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSSQCLSLPPIPFHNA 73

Query: 74 CYCSYHC 78
          C C Y+C
Sbjct: 74 CLCFYNC 80

[Close]

BLAST of CmoCh04G023520 vs. TrEMBL
Match: A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-07
Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 1  MAKFRVCSPLFLALLFSLAF-MVPQAALSVDCVDKLYEG-CLPEDCKQKCLEKHPGSTSQ 60
          ++ FRV     + ++F+++  +VPQ   ++ C D+LY G C+  +C QKC + H G TS+
Sbjct: 21 LSSFRVA---IIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 80

Query: 61 CVAAPPVPFTYLCYCSYHCTNN 81
          C++  P    Y CYC Y+C  N
Sbjct: 81 CISTDPTFTKYACYCFYNCPEN 99

[Close]

BLAST of CmoCh04G023520 vs. NCBI nr
Match: gi|700197262|gb|KGN52439.1| (hypothetical protein Csa_5G634350 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 4.2e-15
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1


Query: 1  MAKFRVCSPLFLAL-LFSLAFMVPQAALSVDCVDKLYEGCLPEDCKQKCLEKHPGSTSQC 60
          MAKF  CS  F+   L S A+++P    +  C  KLY+GCLP+DC QKC +K+P S+S+C
Sbjct: 1  MAKFS-CSLFFIGFFLLSAAWIMPNGVSATKCETKLYDGCLPKDCTQKCSDKYPNSSSEC 60

Query: 61 VAAPPVPFTYLCYCSYHC 78
          VA PP+PF Y CYC Y C
Sbjct: 61 VAVPPIPFHYSCYCFYDC 77

[Close]

BLAST of CmoCh04G023520 vs. NCBI nr
Match: gi|700197261|gb|KGN52438.1| (hypothetical protein Csa_5G634340 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 14 LLFSLAFM-VPQAALSVDCVDKLYE-GCLPEDCKQKCLEKHPG-STSQCVAAPPVPFTYL 73
          LL S+A+M +P+ A +  C DKLY+ GC+ ++CKQ+C  K+P  S+SQC++ PP+PF   
Sbjct: 14 LLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSSQCLSLPPIPFHNA 73

Query: 74 CYCSYHC 78
          C C Y+C
Sbjct: 74 CLCFYNC 80

[Close]

BLAST of CmoCh04G023520 vs. NCBI nr
Match: gi|700199652|gb|KGN54810.1| (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07
Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 1  MAKFRVCSPLFLALLFSLAF-MVPQAALSVDCVDKLYEG-CLPEDCKQKCLEKHPGSTSQ 60
          ++ FRV     + ++F+++  +VPQ   ++ C D+LY G C+  +C QKC + H G TS+
Sbjct: 21 LSSFRVA---IIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 80

Query: 61 CVAAPPVPFTYLCYCSYHCTNN 81
          C++  P    Y CYC Y+C  N
Sbjct: 81 CISTDPTFTKYACYCFYNCPEN 99

The following BLAST results are available for this feature:

BLAST of CmoCh04G023520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G023520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU45_CUCSA	2.9e-15	52.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634350 PE=4 SV=1	[more]
A0A0A0KS76_CUCSA	1.5e-08	47.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634340 PE=4 SV=1	[more]
A0A0A0KYP7_CUCSA	1.3e-07	36.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1	[more]

BLAST of CmoCh04G023520 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G023520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197262\|gb\|KGN52439.1\|	4.2e-15	52.56	hypothetical protein Csa_5G634350 [Cucumis sativus]	[more]
gi\|700197261\|gb\|KGN52438.1\|	2.2e-08	47.76	hypothetical protein Csa_5G634340 [Cucumis sativus]	[more]
gi\|700199652\|gb\|KGN54810.1\|	1.9e-07	36.59	hypothetical protein Csa_4G507400 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010851	SLR1_pollen-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G023520.1	CmoCh04G023520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	S locus-related glycoprotein 1 binding pollen coat protein	PFAM	PF07333	SLR1-BP	coord: 30..77 score: 3.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G023520	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G023520	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G023520	Bottle gourd (USVL1VR-Ls)	cmolsiB610
CmoCh04G023520	Cucumber (Gy14) v2	cgybcmoB634
CmoCh04G023520	Melon (DHL92) v3.6.1	cmomedB714
CmoCh04G023520	Silver-seed gourd	carcmoB1121
CmoCh04G023520	Cucumber (Chinese Long) v3	cmocucB0854
CmoCh04G023520	Watermelon (97103) v2	cmowmbB676
CmoCh04G023520	Wax gourd	cmowgoB0822
CmoCh04G023520	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh04G023520	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G023520	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G023520	Wild cucumber (PI 183967)	cmocpiB742
CmoCh04G023520	Wild cucumber (PI 183967)	cmocpiB751
CmoCh04G023520	Cucumber (Chinese Long) v2	cmocuB722
CmoCh04G023520	Melon (DHL92) v3.5.1	cmomeB625
CmoCh04G023520	Watermelon (Charleston Gray)	cmowcgB636
CmoCh04G023520	Watermelon (97103) v1	cmowmB707