CmoCh04G023510 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G023510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transposon Ty1-H Gag-Pol polyprotein
Location	Cmo_Chr04 : 17472419 .. 17476429 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACACAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGTAAATATGATTTACTCGTTGTAGAAATGTGTTTAGTAGAGTATGACAACTCAACTTGGATACTAGATTCAGGGGCGACTAATCATATTTGTTCTTTTTACCAGGAAACTAGCTCCTGGAGAATGCTTGCGGACGGCGAGATAACACTCAGGGTTGGAACAGAAGAGGTTGTCTCAGCAAGATCAGTGGGAAATTTAAAGTTGTTTTTTGGAGATAGATTCATTATATTAGATAATGTACTTTTTGTTCCAGGAATGAAAAGAAATCTAATATCCATCTCTTGTTTATTAGAACAGTTGTATAAAGTATCTTTTGAAATTAATGAAGTGTTCATTTGCAAAAGAGGTATTCATATTTGTTCTGCAAAACTAGAAAACAACTTATATATGTTAAAACCGAGCAAAACAAAAGCTATTTTAAATACTGAGATGTTTAAAACAGCTGAAACTCAAAATAAACGACAAAAGATTTCTCCTAATATCTTTCTTTGGCATTTAAGACTAGGCCACATTAATCTCAATAGGATTGAGAGATTGGTTAAAAGGGGACTTCTAAATAAGTTAGAAGACAATTCTTTACCTCCATGTGAGTCTTGTCTTGAGGGTAAAATGACTAAACGATCATTTTGCGAAAAAGGTTATAGAGCCAAAGAAACCTTAGAACTCGTGCATACAGATCTCTGTGGTCCAATGAATGTCAAAGCACGAGGAGGGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGGCTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTCAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGAGGAGAGTACATGGATTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCACTGGTATGCCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACTCTATTAGACATGGTTCGGTCTATGATGAGTTTCGCTCAATTACCCGATCCATTTTGGGGATATGCAGTGGAGACTGCTACATACATTTTGAACATGGTTCCTACTAAGAGTGTTTTAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGGTAGTTTACGTCACTTCAGAATTTGGGGATGTCCAGCACATGTGTTGTTGCAAAATCCCAAGAAATTAGAACGTCGTTCAAAATTATGTCTATTCGTAGGATACCCCAAAGAGACGAAAGGTGGTTTGTTTTATGATCCTCAAGAAAATAGAGTGTTTGTATCAACGAACGCTACATTCTTAGAGGAAGACCACGTAAGAAATCATCAACCTCGTAGCAAACTAGTATTAAGTGAGATTTCTAAAGAAGCTACTGATAAAACAACAAGAGTTGTTGATCAAGCTGGTCCTTCAACCAGAGTTGTTGATGGAGCTGACACTTCTGGTCAATCACATCCTTCTCAAGAGTTGAGAATGCCTCGACGTAGTGGGAGGGTTATAACTCAACCCGATCGTTACTTGGGTTTAGCAGAAACTCAAGTCATCATACCTGATGATGGCGTTGAGGATCCATTGACCTATAAACAGGCAATGAATGATGAGGATAGAGATCAGTGGATTAAAGCCATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCGGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGGTACAGACCTTTAAAGCACGACTAGTAGCAAAGGGTTATACCCAAAGAGAGGGGGTGGACTATGAAGAAACCTTCTCTCCTGTTGCTATGCTTAAATCAATAAGAATACTCTTTTCTATTGCCACATTTTATGATTATGAAATTTGGCAAATGGATGTTAAGACAGCTTTTCTAAACGGCAATCTTGAAGAGAGTATCTATATGGCTCAACCAGAGGGGTTCATTGAACAGGATCATTAGCAAAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACTGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTGGTGTTGTACGTTGACGATATCCTACTCATTGGAAATGATGTGAGAATTCTGACTGACATTAAGCATTGGCTGGCAACACAATTCCAAATGAAAGATTTGGGAGAGGCTCAGTTTGTTCTTGGAATCGAAATTATTCGGAATCGCAAGAACAAAACACTAGCATTGTCTCAAGCATCGTACATCGACAAAATGTTGATTCGATATAAGATGCAGGACTCCAAGAAAGGATTATTACCTTTCAGGCATGGAGTTCATTTGTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAAACACATTCCCTATGCATCAGCGGTCGGTAGTCTGATGTATGCCATGCTTTGTACTCGACCCGACATATGCTATGCTGTGGGAATTGTCAGCAGATATCAGTCCAATCCGGGACGTGCTCATTGGACTGCCGTTAAGAATATTCTCAAGTATCTTAGGAGAACGAGGGACTATATGCTAATGTACGGTGTTAAGGATCTGATCCTTATAGGGTACACTGACTCAGATTTTCAGACCGATGTAGATTCGAGGAAATCGACATCAGGATCTGTCTTCACTCTGAACGGAGGAGCAATAATATGGAGAAGCATAAAGCAAGGTTGCATTGCTGATTCCACCATGGAGGCTGAGTATGTTGTTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTAGGAAGTTCTTAACTGATTTGGAAGTCGTTCCAAATATGCATCTTCCCGTCACTCTTTATTGTGATAACAGTGGAGCAGTTGCAAATTCAAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAACGCAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATCGTCACACAGATAGCTTCAGAGCACAACATTGCTGATCCATTTACAAAGCCCCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAA

mRNA sequence

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACACAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGTTATAGAGCCAAAGAAACCTTAGAACTCGTGCATACAGATCTCTGTGGTCCAATGAATGTCAAAGCACGAGGAGGGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGGCTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTCAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGAGGAGAGTACATGGATTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCACTGGTATGCCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACTCTATTAGACATGGTTCGGTCTATGATGAGTTTCGCTCAATTACCCGATCCATTTTGGGGATATGCAGTGGAGACTGCTACATACATTTTGAACATGGTTCCTACTAAGAGTGTTTTAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGGATACCCCAAAGAGACGAAAGGTGGTTTGTTTTATGATCCTCAAGAAAATAGAGTGTTTGTATCAACGAACGCTACATTCTTAGAGGAAGACCACGTAAGAAATCATCAACCTCGTAGCAAACTAGTATTAAGTGAGATTTCTAAAGAAGCTACTGATAAAACAACAAGAGTTGTTGATCAAGCTGGTCCTTCAACCAGAGTTGTTGATGGAGCTGACACTTCTGGTCAATCACATCCTTCTCAAGAGTTGAGAATGCCTCGACGTAGTGGGAGGGTTATAACTCAACCCGATCGTTACTTGGGTTTAGCAGAAACTCAAGTCATCATACCTGATGATGGCGTTGAGGATCCATTGACCTATAAACAGGCAATGAATGATGAGGATAGAGATCAGTGGATTAAAGCCATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCGGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGAATGTTGACGAACCTTGTGTTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTGGTGTTGTACGTTGACGATATCCTACTCATTGGAAATGATGTGAGAATTCTGACTGACATTAAGCATTGGCTGGCAACACAATTCCAAATGAAAGATTTGGGAGAGGCTCAGTTTGTTCTTGGAATCGAAATTATTCGGAATCGCAAGAACAAAACACTAGCATTGTCTCAAGCATCGTACATCGACAAAATGTTGATTCGATATAAGATGCAGGACTCCAAGAAAGGATTATTACCTTTCAGGCATGGAGTTCATTTGTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAAACACATTCCCTATGCATCAGCGGTCGGTAGTCTGATGTATGCCATGCTTTGTACTCGACCCGACATATGCTATGCTGTGGGAATTGTCAGCAGATATCAGTCCAATCCGGGACGTGCTCATTGGACTGCCGTTAAGAATATTCTCAAGTATCTTAGGAGAACGAGGGACTATATGCTAATGTACGGTGTTAAGGATCTGATCCTTATAGGGTACACTGACTCAGATTTTCAGACCGATGTAGATTCGAGGAAATCGACATCAGGATCTGTCTTCACTCTGAACGGAGGAGCAATAATATGGAGAAGCATAAAGCAAGGTTGCATTGCTGATTCCACCATGGAGGCTGAGTATGTTGTTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTAGGAAGTTCTTAACTGATTTGGAAGTCGTTCCAAATATGCATCTTCCCGTCACTCTTTATTGTGATAACAGTGGAGCAGTTGCAAATTCAAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAACGCAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATCGTCACACAGATAGCTTCAGAGCACAACATTGCTGATCCATTTACAAAGCCCCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAA

Coding sequence (CDS)

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACACAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGTTATAGAGCCAAAGAAACCTTAGAACTCGTGCATACAGATCTCTGTGGTCCAATGAATGTCAAAGCACGAGGAGGGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGGCTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTCAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGAGGAGAGTACATGGATTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCACTGGTATGCCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACTCTATTAGACATGGTTCGGTCTATGATGAGTTTCGCTCAATTACCCGATCCATTTTGGGGATATGCAGTGGAGACTGCTACATACATTTTGAACATGGTTCCTACTAAGAGTGTTTTAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGGATACCCCAAAGAGACGAAAGGTGGTTTGTTTTATGATCCTCAAGAAAATAGAGTGTTTGTATCAACGAACGCTACATTCTTAGAGGAAGACCACGTAAGAAATCATCAACCTCGTAGCAAACTAGTATTAAGTGAGATTTCTAAAGAAGCTACTGATAAAACAACAAGAGTTGTTGATCAAGCTGGTCCTTCAACCAGAGTTGTTGATGGAGCTGACACTTCTGGTCAATCACATCCTTCTCAAGAGTTGAGAATGCCTCGACGTAGTGGGAGGGTTATAACTCAACCCGATCGTTACTTGGGTTTAGCAGAAACTCAAGTCATCATACCTGATGATGGCGTTGAGGATCCATTGACCTATAAACAGGCAATGAATGATGAGGATAGAGATCAGTGGATTAAAGCCATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCGGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGAATGTTGACGAACCTTGTGTTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTGGTGTTGTACGTTGACGATATCCTACTCATTGGAAATGATGTGAGAATTCTGACTGACATTAAGCATTGGCTGGCAACACAATTCCAAATGAAAGATTTGGGAGAGGCTCAGTTTGTTCTTGGAATCGAAATTATTCGGAATCGCAAGAACAAAACACTAGCATTGTCTCAAGCATCGTACATCGACAAAATGTTGATTCGATATAAGATGCAGGACTCCAAGAAAGGATTATTACCTTTCAGGCATGGAGTTCATTTGTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAAACACATTCCCTATGCATCAGCGGTCGGTAGTCTGATGTATGCCATGCTTTGTACTCGACCCGACATATGCTATGCTGTGGGAATTGTCAGCAGATATCAGTCCAATCCGGGACGTGCTCATTGGACTGCCGTTAAGAATATTCTCAAGTATCTTAGGAGAACGAGGGACTATATGCTAATGTACGGTGTTAAGGATCTGATCCTTATAGGGTACACTGACTCAGATTTTCAGACCGATGTAGATTCGAGGAAATCGACATCAGGATCTGTCTTCACTCTGAACGGAGGAGCAATAATATGGAGAAGCATAAAGCAAGGTTGCATTGCTGATTCCACCATGGAGGCTGAGTATGTTGTTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTAGGAAGTTCTTAACTGATTTGGAAGTCGTTCCAAATATGCATCTTCCCGTCACTCTTTATTGTGATAACAGTGGAGCAGTTGCAAATTCAAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAACGCAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATCGTCACACAGATAGCTTCAGAGCACAACATTGCTGATCCATTTACAAAGCCCCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAA

Homology

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BLAST of CmoCh04G023510 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 7.0e-80
Identity = 160/359 (44.57%), Postives = 226/359 (62.95%), Query Frame = 1


Query: 612  GVKPIGCKWIYK----RKRDQTGKNVDEPCVY-KRIVNSTVAFLVLYVDDILLIGNDVRI 671
            G+K    +W  K     K     K   +PCVY KR   +    L+LYVDD+L++G D  +
Sbjct: 962  GLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGL 1021

Query: 672  LTDIKHWLATQFQMKDLGEAQFVLGIEIIRNRKNKTLALSQASYIDKMLIRYKMQDSKKG 731
            +  +K  L+  F MKDLG AQ +LG++I+R R ++ L LSQ  YI+++L R+ M+++K  
Sbjct: 1022 IAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPV 1081

Query: 732  LLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQS 791
              P    + LSK+  P T +E  +M  +PY+SAVGSLMYAM+CTRPDI +AVG+VSR+  
Sbjct: 1082 STPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLE 1141

Query: 792  NPGRAHWTAVKNILKYLRRTRDYMLMYGVKDLILIGYTDSDFQTDVDSRKSTSGSVFTLN 851
            NPG+ HW AVK IL+YLR T    L +G  D IL GYTD+D   D+D+RKS++G +FT +
Sbjct: 1142 NPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFS 1201

Query: 852  GGAIIWRSIKQGCIADSTMEAEYVVACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNS 911
            GGAI W+S  Q C+A ST EAEY+ A E  KE +WL++FL +L +    ++   +YCD+ 
Sbjct: 1202 GGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQ 1261

Query: 912  GAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIASEHNIADPFTKPLTAKVFE 966
             A+  SK    H R KHI+ +YH IRE+V    + V +I++  N AD  TK +    FE
Sbjct: 1262 SAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1317

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BLAST of CmoCh04G023510 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 200.3 bits (508), Expect = 9.8e-50
Identity = 122/345 (35.36%), Postives = 191/345 (55.36%), Query Frame = 1


Query: 637  CVY---KRIVNSTVAFLVLYVDDILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVLGIE 696
            C+Y   K  +N  + +++LYVDD+++   D+  + + K +L  +F+M DL E +  +GI 
Sbjct: 1069 CIYILDKGNINENI-YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIR 1128

Query: 697  IIRNRKNKTLALSQASYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKH 756
            I    +   + LSQ++Y+ K+L ++ M++      P    ++     S       ED  +
Sbjct: 1129 I--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSD------EDC-N 1188

Query: 757  IPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMY 816
             P  S +G LMY MLCTRPD+  AV I+SRY S      W  +K +L+YL+ T D  L++
Sbjct: 1189 TPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF 1248

Query: 817  GVKDLI----LIGYTDSDFQTDVDSRKSTSGSVFTL-NGGAIIWRSIKQGCIADSTMEAE 876
              K+L     +IGY DSD+      RKST+G +F + +   I W + +Q  +A S+ EAE
Sbjct: 1249 K-KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAE 1308

Query: 877  YVVACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKY 936
            Y+   EA +E++WL+  LT + +   +  P+ +Y DN G ++ +  P  HKR KHI+ KY
Sbjct: 1309 YMALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKY 1368

Query: 937  HLIREIVQRGDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGL 974
            H  RE VQ   + +  I +E+ +AD FTKPL A  F      LGL
Sbjct: 1369 HFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

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BLAST of CmoCh04G023510 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-21
Identity = 86/284 (30.28%), Postives = 125/284 (44.01%), Query Frame = 1


Query: 603 VWELVDQPDGVKPIGCKWIYKRKRDQTGKNVD------EPCVYKRIVNSTVAFLVLYVDD 662
           VWEL     G+K     W      + T K +       E  +Y R  +    ++ +YVDD
Sbjct: 33  VWELYGGMYGLKQAPLLW--NEHINNTLKKIGFCRHEGEHGLYFRSTSDGPIYIAVYVDD 92

Query: 663 ILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVLGIEIIRNRKNKTLALSQASYIDKMLI 722
           +L+     +I   +K  L   + MKDLG+    LG+ I ++  N  + LS   YI K   
Sbjct: 93  LLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQS-SNGDITLSLQDYIAKAAS 152

Query: 723 RYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICY 782
             ++   K    P  +   L +  SP     ++D+   PY S VG L++     RPDI Y
Sbjct: 153 ESEINTFKLTQTPLCNSKPLFETTSP----HLKDIT--PYQSIVGQLLFCANTGRPDISY 212

Query: 783 AVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMY-GVKDLILIGYTDSDFQTDVDSR 842
            V ++SR+   P   H  + + +L+YL  TR   L Y     L L  Y D+      D  
Sbjct: 213 PVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDASHGAIHDLP 272

Query: 843 KSTSGSVFTLNGGAIIWRSIK-QGCIADSTMEAEYVVACEAAKE 879
            ST G V  L G  + W S K +G I   + EAEY+ A E   E
Sbjct: 273 HSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITASETVME 307

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BLAST of CmoCh04G023510 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-20
Identity = 76/234 (32.48%), Postives = 117/234 (50.00%), Query Frame = 1


Query: 649 FLVLYVDDILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVLGIEIIRNRKNKTLALSQA 708
           +L+LYVDDILL G+   +L  +   L++ F MKDLG   + LGI+I  +     L LSQ 
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQT 61

Query: 709 SYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAML 768
            Y +++L    M D K    P    ++ S   + K P   +      + S VG+L Y  L
Sbjct: 62  KYAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSD------FRSIVGALQYLTL 121

Query: 769 CTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDY-MLMYGVKDLILIGYTDSD 828
            TRPDI YAV IV +    P  A +  +K +L+Y++ T  + + ++    L +  + DSD
Sbjct: 122 -TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSD 181

Query: 829 FQTDVDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEAEYVVACEAAKESVW 882
           +     +R+ST+G    L    I W + +Q  ++ S+ E EY      A E  W
Sbjct: 182 WAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

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BLAST of CmoCh04G023510 vs. Swiss-Prot
Match: YP14B_YEAST (Transposon Ty1-PR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-PR3 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-16
Identity = 51/172 (29.65%), Postives = 90/172 (52.33%), Query Frame = 1


Query: 272 CPKYLAEKKAEKTQ-QGYRAK-----ETLELVHTDLCGPMNVKARGGYEYFISFIDDYSR 331
           CP  L  K  +    +G R K     E  + +HTD+ GP++   +    YFISF D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696

Query: 332 YGYLYLMHHKSE--ALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIR 391
           + ++Y +H + E   L+ F      ++N    ++  ++ DRG EY +     ++ ++GI 
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756

Query: 392 SQLSATGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILN 436
              + T   + +GV+ER NRTLLD  R+ +  + LP+  W  A+E +T + N
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRN 808

[Close]

BLAST of CmoCh04G023510 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 6.2e-160
Identity = 273/314 (86.94%), Postives = 299/314 (95.22%), Query Frame = 1


Query: 631  KNVDEPCVYKRIVNSTVAFLVLYVDDILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVL 690
            +NVDEPCVYK+IVNS VAFL+LYVDDILLIGNDV  LTD+K WL TQFQMKDLGEAQ++L
Sbjct: 979  QNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYIL 1038

Query: 691  GIEIIRNRKNKTLALSQASYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVED 750
            GI+I+RNRKNKTLA+SQASYIDK+L RYKMQ+SKKG LPFRHG+HLSKEQ PKTPQEVED
Sbjct: 1039 GIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVED 1098

Query: 751  MKHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYM 810
            M++IPY+SAVGSLMYAMLCTRPDICY+VGIVSRYQSNPGR HWTAVKNILKYLRRTR+YM
Sbjct: 1099 MRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYM 1158

Query: 811  LMYGVKDLILIGYTDSDFQTDVDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEAEYV 870
            L+YG KDLIL GYTDSDFQ+D D+RKSTSGSVFTLNGGA++WRS+KQ CIADSTMEAEYV
Sbjct: 1159 LVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYV 1218

Query: 871  VACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHL 930
             ACEAAKE+VWLRKFLTDLEVVPNMHLP+TLYCDNSGAVANSKEPRSHKRGKHIERKYHL
Sbjct: 1219 AACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1278

Query: 931  IREIVQRGDVIVTQ 945
            IREIV RGDV+VTQ
Sbjct: 1279 IREIVHRGDVVVTQ 1292

[Close]

BLAST of CmoCh04G023510 vs. TrEMBL
Match: A5AUE7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021035 PE=4 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 2.7e-147
Identity = 254/346 (73.41%), Postives = 302/346 (87.28%), Query Frame = 1


Query: 631 KNVDEPCVYKRIVNSTVAFLVLYVDDILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVL 690
           +N+ EPCVYK+I    V FLVLYVDDILLIGNDV  L+ +K+WLA+QFQMKDLGEA ++L
Sbjct: 319 QNLGEPCVYKQIGGDKVVFLVLYVDDILLIGNDVESLSKVKNWLASQFQMKDLGEASYIL 378

Query: 691 GIEIIRNRKNKTLALSQASYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVED 750
           GI++ R+RKN+ LALSQA+YIDK+L+++ M++SKKG LP RHGVHLSKEQ PKTPQ+ E 
Sbjct: 379 GIQMTRDRKNRLLALSQAAYIDKVLVKFAMENSKKGNLPSRHGVHLSKEQCPKTPQDEEK 438

Query: 751 MKHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYM 810
           M+ +PYASAVGSLMYAMLCTRPDIC+AVG+VSRYQSNPG  HW AVK+ILKYLRRTR+YM
Sbjct: 439 MRRVPYASAVGSLMYAMLCTRPDICFAVGVVSRYQSNPGLDHWVAVKHILKYLRRTRNYM 498

Query: 811 LMYGVKDLILIGYTDSDFQTDVDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEAEYV 870
           L+Y  ++LI IGYTDSDFQ+D DSRKSTS +VFTL GGAIIWRS+KQ C+ADSTMEAEYV
Sbjct: 499 LVYSGRELIPIGYTDSDFQSDRDSRKSTSEAVFTLGGGAIIWRSVKQTCVADSTMEAEYV 558

Query: 871 VACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHL 930
            ACEAAKE+VWLR+FL +LEVVPNMH P+ LYCDNSGAVAN+KEPR+H++GKHIERK+HL
Sbjct: 559 AACEAAKEAVWLREFLKELEVVPNMHEPIRLYCDNSGAVANAKEPRNHRKGKHIERKFHL 618

Query: 931 IREIVQRGDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM 977
           +REIV RGDV V +IAS +NIADPFTK L A+ FE HL  +GLR M
Sbjct: 619 VREIVSRGDVSVEKIASANNIADPFTKTLPARSFEQHLEGMGLREM 664

[Close]

BLAST of CmoCh04G023510 vs. TrEMBL
Match: D3IVU0_9POAL (Putative retrotransposon protein OS=Phyllostachys edulis PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 2.5e-145
Identity = 287/621 (46.22%), Postives = 396/621 (63.77%), Query Frame = 1


Query: 366 GEYMDLRFQDYMIEHGIRSQLSATGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGY 425
           GE++ L F +++ + GI  QL+  G PQ NGVSERRNRTLLDMVRSMMS + LP  FWGY
Sbjct: 292 GEFLSLEFGNHLKQCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLYFWGY 351

Query: 426 AVETATYILNMVPTKSVLETPYELWKGRKGYPKETKGGLFYDPQENRVFVSTNATFLEED 485
           A+ETA +ILN +  KS  +  + +     GYP+ETKG  FY+ +E++VFV+ N  FLE++
Sbjct: 352 ALETAAFILNKLTPKS--DKCFFI-----GYPRETKGYYFYNREEDKVFVARNGVFLEKE 411

Query: 486 HVRNHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSG 545
            +       K+ L EI + + + +T       P+  ++D         P  +   PRRS 
Sbjct: 412 FLSKGVSGRKVRLEEIRETSENVST-------PTEHLLDEQIVV---EPVDKAPAPRRSK 471

Query: 546 RVITQPDRY---LGLAETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLE--MESMYF 605
           R    P RY   + L    +    D     +  K A  + +  + +     E  ++    
Sbjct: 472 RPRQLPTRYGHDILLLNNAIAAYFDYEIWQMDVKTAFLNGNLHEDVYMTQPEGFVDPNNA 531

Query: 606 NSVWELVDQPDGVKPIGCKWIYKR----KRDQTGKNVDEPCVYKRIVNSTVAFLVLYVDD 665
           + V +L     G+K     W  +     KR    KN +EPCVY ++  ST+  L+LYVDD
Sbjct: 532 SKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGFIKNKEEPCVYMKVSGSTLVILILYVDD 591

Query: 666 ILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVLGIEIIRNRKNKTLALSQASYIDKMLI 725
           ILL+GND+ +L  +K  L   F MKDLG+A ++LGI I R+R  + + LSQ  YIDK+L 
Sbjct: 592 ILLVGNDIPMLESVKSSLRKSFSMKDLGDAAYILGIRIYRDRSKRLIGLSQEMYIDKVLN 651

Query: 726 RYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICY 785
           R+ MQ+SK+G LP  HG++LSK Q P T  E + M  IPYASA+GS+MYAM+CTRPD+ Y
Sbjct: 652 RFNMQNSKRGFLPMAHGINLSKNQCPTTTDERDKMSDIPYASAIGSIMYAMICTRPDVSY 711

Query: 786 AVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMY-GVKDLILIGYTDSDFQTDVDSR 845
           A+ + SRYQ++P   HWTAVKNILKYLRRT+D  L+Y G ++L++ GYTD+ FQTD D  
Sbjct: 712 ALSVTSRYQADPSEGHWTAVKNILKYLRRTKDVFLVYGGDEELVVNGYTDASFQTDKDDY 771

Query: 846 KSTSGSVFTLNGGAIIWRSIKQGCIADSTMEAEYVVACEAAKESVWLRKFLTDLEVVPNM 905
           +S SG VF LNGGA+ W+S KQ  +ADST EAEY+ A EAAKE VW+R F+T+L +VP+ 
Sbjct: 772 RSQSGFVFILNGGAVSWKSSKQETVADSTTEAEYIAASEAAKEGVWIRNFITELGMVPSA 831

Query: 906 HLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIASEHNIADPF 965
             P+ LYCDN+GA+A +KEPRSH++ KHI R+YHLIRE+V RGDV + ++ ++ NIADP 
Sbjct: 832 SSPMDLYCDNNGAIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKVHTDLNIADPL 891

Query: 966 TKPLTAKVFEGHLVSLGLRVM 977
           TKPLT    E H  ++G+R +
Sbjct: 892 TKPLTQPKHEAHTRAIGIRYL 895

[Close]

BLAST of CmoCh04G023510 vs. TrEMBL
Match: H2KWP6_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g25734 PE=4 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 6.2e-144
Identity = 329/826 (39.83%), Postives = 448/826 (54.24%), Query Frame = 1


Query: 254 ADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQGYRAKETLELVHTDLCGPMNVKARGGY 313
           A   +CF C E  HWKRNC KYL + K +K Q G  +     +         N K +   
Sbjct: 132 AKDAECFFCKEADHWKRNCKKYLEQLK-QKQQDGKSSTSVYNI---------NAKRQRPN 191

Query: 314 EYFISFIDDYSRYGYLYLMHHKSEALEK-----------FREYKTEVQNLLGKTIK---T 373
           +   +FI       + +L H   + +EK           F  ++T    LLGK  K   T
Sbjct: 192 DLNPTFI------WHCHLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFT 251

Query: 374 LRSDRGGEYMDLRFQDYMIEHGIRSQLSATGMPQQNGVSERRNRTLLDMVRSMMSFAQLP 433
            +S+R  E + L + D   E GI  QL+  G PQ NGVSERRNRTLLDMVRSMMS   LP
Sbjct: 252 GQSERASELLGLVYTD---ECGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQTDLP 311

Query: 434 DPFWGYAVETATYILNMVPTKSVLETPYELWKGRK------------------------- 493
             FWGYA+ETA + LN VP+KS+ +TPYE+W G++                         
Sbjct: 312 LSFWGYALETAAFTLNRVPSKSLDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTP 371

Query: 494 --------GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEAT 553
                   GYPKETKG  FY+ +E++VFV+ +  FLE++ +        + L EI +   
Sbjct: 372 KSDKYFFVGYPKETKGYYFYNREEDKVFVARHDVFLEKEFISTKDSGIMVRLEEIQETPK 431

Query: 554 DKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY--LGLAETQVII 613
           + +T    Q      V        +  P  E    RRS R+   P RY  L   +  +++
Sbjct: 432 NASTSTQPQQDEQDVVQQVEQVVVE--PVVEAPASRRSERIWRTPARYALLTTGQRDILL 491

Query: 614 PDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKR 673
            D+  + P TY++AM   D  +W+ AM  E+ESM+ N VW LVD PDGVK I CKW++K+
Sbjct: 492 LDN--DKPTTYEEAMVGPDSKKWLGAMKSEIESMHVNQVWNLVDPPDGVKGIECKWVFKK 551

Query: 674 KRDQTGKNVDEPCVYK-RIVNSTVAFL--VLYVDDILLIG--NDVRILT------DIKHW 733
           K D  G NV    +YK R+V      +  V Y      +G    +RI+       D + W
Sbjct: 552 KTDLDG-NVH---IYKARLVAKGFRQIQSVDYDGTFSSVGMLKSIRIILAIPAYFDYEIW 611

Query: 734 ---LATQFQMKDLGEAQFVLGIE------------------IIRNRKN------------ 793
              + T F  ++L E + + G++                   ++N +             
Sbjct: 612 QMDVKTAFLNENLDEDKSIYGLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSAL 671

Query: 794 ------------------KTLALSQASYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSP 853
                             + L  SQ++YIDK+L R+ MQDSKKG LP  HG++L K Q P
Sbjct: 672 DLREAAYILSIRIYRDRSRRLIGSQSTYIDKVLKRFNMQDSKKGFLPLSHGINLGKNQCP 731

Query: 854 KTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKY 913
           +T  E   M  IPYASA+GS+MYAMLCTRPD+ YA+   S+YQS+PG +HW AVKNILKY
Sbjct: 732 QTTDERNKMSVIPYASAIGSIMYAMLCTRPDVPYALSATSQYQSDPGESHWIAVKNILKY 791

Query: 914 LRRTRDYMLMY-GVKDLILIGYTDSDFQTDVDSRKSTSGSVFTLNGGAIIWRSIKQGCIA 968
           LRRT+D  L+Y G ++L++  YTD+ FQTD D  +S SG VF LNGGA+ W+S KQ  +A
Sbjct: 792 LRRTKDMFLIYGGQEELVVNNYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVA 851

[Close]

BLAST of CmoCh04G023510 vs. TrEMBL
Match: A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.1e-140
Identity = 246/316 (77.85%), Postives = 278/316 (87.97%), Query Frame = 1


Query: 631  KNVDEPCVYKRIVNSTVAFLVLYVDDILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVL 690
            +NVDE CVYK+I  S VAFL+LYVDDILLIGNDV  L D+K WL T F MKDLGEAQ++L
Sbjct: 995  QNVDESCVYKKISGSVVAFLILYVDDILLIGNDVEYLEDVKKWLNTSFSMKDLGEAQYIL 1054

Query: 691  GIEIIRNRKNKTLALSQASYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVED 750
            GI I R+R NKT+ +SQ++YIDK+L R+KMQDSKKGLLPFRHG+HLSKEQ PKTPQEVED
Sbjct: 1055 GIRIYRDRSNKTIGMSQSTYIDKVLSRFKMQDSKKGLLPFRHGIHLSKEQCPKTPQEVED 1114

Query: 751  MKHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYM 810
            M++IPY+SA+GSLMYAMLCTRPD+CYA+ IVSRYQSNPGR HWTAVKNILKYLRRTR+  
Sbjct: 1115 MRNIPYSSAIGSLMYAMLCTRPDVCYALSIVSRYQSNPGRDHWTAVKNILKYLRRTRNMF 1174

Query: 811  LMY-GVKDLILIGYTDSDFQTDVDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEAEY 870
            L+Y G KDL + GYTDS FQTD D  KS SG VFTLNGGA+ WRS KQ C+ADST EAEY
Sbjct: 1175 LVYGGDKDLAVKGYTDSSFQTDKDDSKSQSG-VFTLNGGAVSWRSSKQTCVADSTCEAEY 1234

Query: 871  VVACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYH 930
            V ACEAAKE+VW+RKFLTDL VVPNMHLP+TLYCDNSGAVAN+KEPRSHKRGKHIERKYH
Sbjct: 1235 VAACEAAKEAVWIRKFLTDLGVVPNMHLPITLYCDNSGAVANAKEPRSHKRGKHIERKYH 1294

Query: 931  LIREIVQRGDVIVTQI 946
            LIREIV+RGDV+V Q+
Sbjct: 1295 LIREIVERGDVVVCQM 1309

[Close]

BLAST of CmoCh04G023510 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 137.5 bits (345), Expect = 4.4e-32
Identity = 100/343 (29.15%), Postives = 168/343 (48.98%), Query Frame = 1


Query: 596 ESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTG----KNVDEPCVYKRIVNSTVAFLV 655
           +S+  N+V  L     G+K    +W  K      G    ++  +   + +I  +    ++
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVL 281

Query: 656 LYVDDILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVLGIEIIRNRKNKTLALSQASYI 715
           +YVDDI++  N+   + ++K  L + F+++DLG  ++ LG+EI R+     + + Q  Y 
Sbjct: 282 VYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAG--INICQRKYA 341

Query: 716 DKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTR 775
             +L    +   K   +P    V  S         +  D K   Y   +G LMY  + TR
Sbjct: 342 LDLLDETGLLGCKPSSVPMDPSVTFSAHSGG----DFVDAK--AYRRLIGRLMYLQI-TR 401

Query: 776 PDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGVK-DLILIGYTDSDFQT 835
            DI +AV  +S++   P  AH  AV  IL Y++ T    L Y  + ++ L  ++D+ FQ+
Sbjct: 402 LDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQS 461

Query: 836 DVDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEAEYVVACEAAKESVWLRKFLTDLE 895
             D+R+ST+G    L    I W+S KQ  ++ S+ EAEY     A  E +WL +F  +L+
Sbjct: 462 CKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQ 521

Query: 896 VVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE 934
           +   +  P  L+CDN+ A+  +     H+R KHIE   H +RE
Sbjct: 522 L--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of CmoCh04G023510 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 3.5e-21
Identity = 76/234 (32.48%), Postives = 117/234 (50.00%), Query Frame = 1


Query: 649 FLVLYVDDILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVLGIEIIRNRKNKTLALSQA 708
           +L+LYVDDILL G+   +L  +   L++ F MKDLG   + LGI+I  +     L LSQ 
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQT 61

Query: 709 SYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAML 768
            Y +++L    M D K    P    ++ S   + K P   +      + S VG+L Y  L
Sbjct: 62  KYAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSD------FRSIVGALQYLTL 121

Query: 769 CTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDY-MLMYGVKDLILIGYTDSD 828
            TRPDI YAV IV +    P  A +  +K +L+Y++ T  + + ++    L +  + DSD
Sbjct: 122 -TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSD 181

Query: 829 FQTDVDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEAEYVVACEAAKESVW 882
           +     +R+ST+G    L    I W + +Q  ++ S+ E EY      A E  W
Sbjct: 182 WAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmoCh04G023510 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 573.2 bits (1476), Expect = 8.9e-160
Identity = 273/314 (86.94%), Postives = 299/314 (95.22%), Query Frame = 1


Query: 631  KNVDEPCVYKRIVNSTVAFLVLYVDDILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVL 690
            +NVDEPCVYK+IVNS VAFL+LYVDDILLIGNDV  LTD+K WL TQFQMKDLGEAQ++L
Sbjct: 979  QNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYIL 1038

Query: 691  GIEIIRNRKNKTLALSQASYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVED 750
            GI+I+RNRKNKTLA+SQASYIDK+L RYKMQ+SKKG LPFRHG+HLSKEQ PKTPQEVED
Sbjct: 1039 GIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVED 1098

Query: 751  MKHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYM 810
            M++IPY+SAVGSLMYAMLCTRPDICY+VGIVSRYQSNPGR HWTAVKNILKYLRRTR+YM
Sbjct: 1099 MRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYM 1158

Query: 811  LMYGVKDLILIGYTDSDFQTDVDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEAEYV 870
            L+YG KDLIL GYTDSDFQ+D D+RKSTSGSVFTLNGGA++WRS+KQ CIADSTMEAEYV
Sbjct: 1159 LVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYV 1218

Query: 871  VACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHL 930
             ACEAAKE+VWLRKFLTDLEVVPNMHLP+TLYCDNSGAVANSKEPRSHKRGKHIERKYHL
Sbjct: 1219 AACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1278

Query: 931  IREIVQRGDVIVTQ 945
            IREIV RGDV+VTQ
Sbjct: 1279 IREIVHRGDVVVTQ 1292

[Close]

BLAST of CmoCh04G023510 vs. NCBI nr
Match: gi|147768021|emb|CAN69397.1| (hypothetical protein VITISV_021035 [Vitis vinifera])

HSP 1 Score: 531.2 bits (1367), Expect = 3.9e-147
Identity = 254/346 (73.41%), Postives = 302/346 (87.28%), Query Frame = 1


Query: 631 KNVDEPCVYKRIVNSTVAFLVLYVDDILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVL 690
           +N+ EPCVYK+I    V FLVLYVDDILLIGNDV  L+ +K+WLA+QFQMKDLGEA ++L
Sbjct: 319 QNLGEPCVYKQIGGDKVVFLVLYVDDILLIGNDVESLSKVKNWLASQFQMKDLGEASYIL 378

Query: 691 GIEIIRNRKNKTLALSQASYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVED 750
           GI++ R+RKN+ LALSQA+YIDK+L+++ M++SKKG LP RHGVHLSKEQ PKTPQ+ E 
Sbjct: 379 GIQMTRDRKNRLLALSQAAYIDKVLVKFAMENSKKGNLPSRHGVHLSKEQCPKTPQDEEK 438

Query: 751 MKHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYM 810
           M+ +PYASAVGSLMYAMLCTRPDIC+AVG+VSRYQSNPG  HW AVK+ILKYLRRTR+YM
Sbjct: 439 MRRVPYASAVGSLMYAMLCTRPDICFAVGVVSRYQSNPGLDHWVAVKHILKYLRRTRNYM 498

Query: 811 LMYGVKDLILIGYTDSDFQTDVDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEAEYV 870
           L+Y  ++LI IGYTDSDFQ+D DSRKSTS +VFTL GGAIIWRS+KQ C+ADSTMEAEYV
Sbjct: 499 LVYSGRELIPIGYTDSDFQSDRDSRKSTSEAVFTLGGGAIIWRSVKQTCVADSTMEAEYV 558

Query: 871 VACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHL 930
            ACEAAKE+VWLR+FL +LEVVPNMH P+ LYCDNSGAVAN+KEPR+H++GKHIERK+HL
Sbjct: 559 AACEAAKEAVWLREFLKELEVVPNMHEPIRLYCDNSGAVANAKEPRNHRKGKHIERKFHL 618

Query: 931 IREIVQRGDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM 977
           +REIV RGDV V +IAS +NIADPFTK L A+ FE HL  +GLR M
Sbjct: 619 VREIVSRGDVSVEKIASANNIADPFTKTLPARSFEQHLEGMGLREM 664

[Close]

BLAST of CmoCh04G023510 vs. NCBI nr
Match: gi|284434733|gb|ADB85430.1| (putative retrotransposon protein [Phyllostachys edulis])

HSP 1 Score: 524.6 bits (1350), Expect = 3.6e-145
Identity = 287/621 (46.22%), Postives = 396/621 (63.77%), Query Frame = 1


Query: 366 GEYMDLRFQDYMIEHGIRSQLSATGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGY 425
           GE++ L F +++ + GI  QL+  G PQ NGVSERRNRTLLDMVRSMMS + LP  FWGY
Sbjct: 292 GEFLSLEFGNHLKQCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLYFWGY 351

Query: 426 AVETATYILNMVPTKSVLETPYELWKGRKGYPKETKGGLFYDPQENRVFVSTNATFLEED 485
           A+ETA +ILN +  KS  +  + +     GYP+ETKG  FY+ +E++VFV+ N  FLE++
Sbjct: 352 ALETAAFILNKLTPKS--DKCFFI-----GYPRETKGYYFYNREEDKVFVARNGVFLEKE 411

Query: 486 HVRNHQPRSKLVLSEISKEATDKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSG 545
            +       K+ L EI + + + +T       P+  ++D         P  +   PRRS 
Sbjct: 412 FLSKGVSGRKVRLEEIRETSENVST-------PTEHLLDEQIVV---EPVDKAPAPRRSK 471

Query: 546 RVITQPDRY---LGLAETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLE--MESMYF 605
           R    P RY   + L    +    D     +  K A  + +  + +     E  ++    
Sbjct: 472 RPRQLPTRYGHDILLLNNAIAAYFDYEIWQMDVKTAFLNGNLHEDVYMTQPEGFVDPNNA 531

Query: 606 NSVWELVDQPDGVKPIGCKWIYKR----KRDQTGKNVDEPCVYKRIVNSTVAFLVLYVDD 665
           + V +L     G+K     W  +     KR    KN +EPCVY ++  ST+  L+LYVDD
Sbjct: 532 SKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGFIKNKEEPCVYMKVSGSTLVILILYVDD 591

Query: 666 ILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVLGIEIIRNRKNKTLALSQASYIDKMLI 725
           ILL+GND+ +L  +K  L   F MKDLG+A ++LGI I R+R  + + LSQ  YIDK+L 
Sbjct: 592 ILLVGNDIPMLESVKSSLRKSFSMKDLGDAAYILGIRIYRDRSKRLIGLSQEMYIDKVLN 651

Query: 726 RYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICY 785
           R+ MQ+SK+G LP  HG++LSK Q P T  E + M  IPYASA+GS+MYAM+CTRPD+ Y
Sbjct: 652 RFNMQNSKRGFLPMAHGINLSKNQCPTTTDERDKMSDIPYASAIGSIMYAMICTRPDVSY 711

Query: 786 AVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMY-GVKDLILIGYTDSDFQTDVDSR 845
           A+ + SRYQ++P   HWTAVKNILKYLRRT+D  L+Y G ++L++ GYTD+ FQTD D  
Sbjct: 712 ALSVTSRYQADPSEGHWTAVKNILKYLRRTKDVFLVYGGDEELVVNGYTDASFQTDKDDY 771

Query: 846 KSTSGSVFTLNGGAIIWRSIKQGCIADSTMEAEYVVACEAAKESVWLRKFLTDLEVVPNM 905
           +S SG VF LNGGA+ W+S KQ  +ADST EAEY+ A EAAKE VW+R F+T+L +VP+ 
Sbjct: 772 RSQSGFVFILNGGAVSWKSSKQETVADSTTEAEYIAASEAAKEGVWIRNFITELGMVPSA 831

Query: 906 HLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIASEHNIADPF 965
             P+ LYCDN+GA+A +KEPRSH++ KHI R+YHLIRE+V RGDV + ++ ++ NIADP 
Sbjct: 832 SSPMDLYCDNNGAIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKVHTDLNIADPL 891

Query: 966 TKPLTAKVFEGHLVSLGLRVM 977
           TKPLT    E H  ++G+R +
Sbjct: 892 TKPLTQPKHEAHTRAIGIRYL 895

[Close]

BLAST of CmoCh04G023510 vs. NCBI nr
Match: gi|108862621|gb|ABG22008.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 520.0 bits (1338), Expect = 8.9e-144
Identity = 329/826 (39.83%), Postives = 448/826 (54.24%), Query Frame = 1


Query: 254 ADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQGYRAKETLELVHTDLCGPMNVKARGGY 313
           A   +CF C E  HWKRNC KYL + K +K Q G  +     +         N K +   
Sbjct: 132 AKDAECFFCKEADHWKRNCKKYLEQLK-QKQQDGKSSTSVYNI---------NAKRQRPN 191

Query: 314 EYFISFIDDYSRYGYLYLMHHKSEALEK-----------FREYKTEVQNLLGKTIK---T 373
           +   +FI       + +L H   + +EK           F  ++T    LLGK  K   T
Sbjct: 192 DLNPTFI------WHCHLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFT 251

Query: 374 LRSDRGGEYMDLRFQDYMIEHGIRSQLSATGMPQQNGVSERRNRTLLDMVRSMMSFAQLP 433
            +S+R  E + L + D   E GI  QL+  G PQ NGVSERRNRTLLDMVRSMMS   LP
Sbjct: 252 GQSERASELLGLVYTD---ECGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQTDLP 311

Query: 434 DPFWGYAVETATYILNMVPTKSVLETPYELWKGRK------------------------- 493
             FWGYA+ETA + LN VP+KS+ +TPYE+W G++                         
Sbjct: 312 LSFWGYALETAAFTLNRVPSKSLDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTP 371

Query: 494 --------GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEAT 553
                   GYPKETKG  FY+ +E++VFV+ +  FLE++ +        + L EI +   
Sbjct: 372 KSDKYFFVGYPKETKGYYFYNREEDKVFVARHDVFLEKEFISTKDSGIMVRLEEIQETPK 431

Query: 554 DKTTRVVDQAGPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY--LGLAETQVII 613
           + +T    Q      V        +  P  E    RRS R+   P RY  L   +  +++
Sbjct: 432 NASTSTQPQQDEQDVVQQVEQVVVE--PVVEAPASRRSERIWRTPARYALLTTGQRDILL 491

Query: 614 PDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKR 673
            D+  + P TY++AM   D  +W+ AM  E+ESM+ N VW LVD PDGVK I CKW++K+
Sbjct: 492 LDN--DKPTTYEEAMVGPDSKKWLGAMKSEIESMHVNQVWNLVDPPDGVKGIECKWVFKK 551

Query: 674 KRDQTGKNVDEPCVYK-RIVNSTVAFL--VLYVDDILLIG--NDVRILT------DIKHW 733
           K D  G NV    +YK R+V      +  V Y      +G    +RI+       D + W
Sbjct: 552 KTDLDG-NVH---IYKARLVAKGFRQIQSVDYDGTFSSVGMLKSIRIILAIPAYFDYEIW 611

Query: 734 ---LATQFQMKDLGEAQFVLGIE------------------IIRNRKN------------ 793
              + T F  ++L E + + G++                   ++N +             
Sbjct: 612 QMDVKTAFLNENLDEDKSIYGLKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSAL 671

Query: 794 ------------------KTLALSQASYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSP 853
                             + L  SQ++YIDK+L R+ MQDSKKG LP  HG++L K Q P
Sbjct: 672 DLREAAYILSIRIYRDRSRRLIGSQSTYIDKVLKRFNMQDSKKGFLPLSHGINLGKNQCP 731

Query: 854 KTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKY 913
           +T  E   M  IPYASA+GS+MYAMLCTRPD+ YA+   S+YQS+PG +HW AVKNILKY
Sbjct: 732 QTTDERNKMSVIPYASAIGSIMYAMLCTRPDVPYALSATSQYQSDPGESHWIAVKNILKY 791

Query: 914 LRRTRDYMLMY-GVKDLILIGYTDSDFQTDVDSRKSTSGSVFTLNGGAIIWRSIKQGCIA 968
           LRRT+D  L+Y G ++L++  YTD+ FQTD D  +S SG VF LNGGA+ W+S KQ  +A
Sbjct: 792 LRRTKDMFLIYGGQEELVVNNYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVA 851

[Close]

BLAST of CmoCh04G023510 vs. NCBI nr
Match: gi|1019597807|gb|AMY96445.1| (gag/pol protein [Momordica dioica])

HSP 1 Score: 509.2 bits (1310), Expect = 1.6e-140
Identity = 246/316 (77.85%), Postives = 278/316 (87.97%), Query Frame = 1


Query: 631  KNVDEPCVYKRIVNSTVAFLVLYVDDILLIGNDVRILTDIKHWLATQFQMKDLGEAQFVL 690
            +NVDE CVYK+I  S VAFL+LYVDDILLIGNDV  L D+K WL T F MKDLGEAQ++L
Sbjct: 995  QNVDESCVYKKISGSVVAFLILYVDDILLIGNDVEYLEDVKKWLNTSFSMKDLGEAQYIL 1054

Query: 691  GIEIIRNRKNKTLALSQASYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVED 750
            GI I R+R NKT+ +SQ++YIDK+L R+KMQDSKKGLLPFRHG+HLSKEQ PKTPQEVED
Sbjct: 1055 GIRIYRDRSNKTIGMSQSTYIDKVLSRFKMQDSKKGLLPFRHGIHLSKEQCPKTPQEVED 1114

Query: 751  MKHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYM 810
            M++IPY+SA+GSLMYAMLCTRPD+CYA+ IVSRYQSNPGR HWTAVKNILKYLRRTR+  
Sbjct: 1115 MRNIPYSSAIGSLMYAMLCTRPDVCYALSIVSRYQSNPGRDHWTAVKNILKYLRRTRNMF 1174

Query: 811  LMY-GVKDLILIGYTDSDFQTDVDSRKSTSGSVFTLNGGAIIWRSIKQGCIADSTMEAEY 870
            L+Y G KDL + GYTDS FQTD D  KS SG VFTLNGGA+ WRS KQ C+ADST EAEY
Sbjct: 1175 LVYGGDKDLAVKGYTDSSFQTDKDDSKSQSG-VFTLNGGAVSWRSSKQTCVADSTCEAEY 1234

Query: 871  VVACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYH 930
            V ACEAAKE+VW+RKFLTDL VVPNMHLP+TLYCDNSGAVAN+KEPRSHKRGKHIERKYH
Sbjct: 1235 VAACEAAKEAVWIRKFLTDLGVVPNMHLPITLYCDNSGAVANAKEPRSHKRGKHIERKYH 1294

Query: 931  LIREIVQRGDVIVTQI 946
            LIREIV+RGDV+V Q+
Sbjct: 1295 LIREIVERGDVVVCQM 1309

The following BLAST results are available for this feature:

BLAST of CmoCh04G023510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	7.0e-80	44.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	9.8e-50	35.36	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
YCH4_YEAST	1.9e-21	30.28	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]
M810_ARATH	6.2e-20	32.48	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]
YP14B_YEAST	7.1e-16	29.65	Transposon Ty1-PR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of CmoCh04G023510 vs. TrEMBL


Match Name	E-value	Identity	Description
E2GK51_BRYDI	6.2e-160	86.94	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
A5AUE7_VITVI	2.7e-147	73.41	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021035 PE=4 SV=1	[more]
D3IVU0_9POAL	2.5e-145	46.22	Putative retrotransposon protein OS=Phyllostachys edulis PE=4 SV=1	[more]
H2KWP6_ORYSJ	6.2e-144	39.83	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]
A0A165U314_9ROSI	1.1e-140	77.85	Gag/pol protein OS=Momordica dioica PE=4 SV=1	[more]

BLAST of CmoCh04G023510 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	4.4e-32	29.15	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	3.5e-21	32.48	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CmoCh04G023510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|299474487\|gb\|ADJ18449.1\|	8.9e-160	86.94	gag/pol protein [Bryonia dioica]	[more]
gi\|147768021\|emb\|CAN69397.1\|	3.9e-147	73.41	hypothetical protein VITISV_021035 [Vitis vinifera]	[more]
gi\|284434733\|gb\|ADB85430.1\|	3.6e-145	46.22	putative retrotransposon protein [Phyllostachys edulis]	[more]
gi\|108862621\|gb\|ABG22008.1\|	8.9e-144	39.83	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]
gi\|1019597807\|gb\|AMY96445.1\|	1.6e-140	77.85	gag/pol protein [Momordica dioica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR001878	Znf_CCHC
IPR012337	RNaseH-like_sf
IPR013103	RVT_2

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G023510.1	CmoCh04G023510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 293..408 score: 5.8
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 289..454 score: 21
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 253..275 score: 6.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 257..274 score: 5.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 258..274 score: 0.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 258..274 score: 9
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 247..277 score: 2.9
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 286..447 score: 6.0
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 289..448 score: 4.86
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 633..729 score: 2.4E-21coord: 601..632 score: 3.
None	No IPR available	unknown	Coil	Coil	coord: 335..355 scor
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 12..899 score: 1.2E
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 12..899 score: 1.2E
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..193 score: 3.3
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 740..929 score: 8.45E-6coord: 648..710 score: 8.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G023510	Cucumber (Gy14) v2	cgybcmoB634
CmoCh04G023510	Melon (DHL92) v3.6.1	cmomedB714
CmoCh04G023510	Silver-seed gourd	carcmoB1121
CmoCh04G023510	Cucumber (Chinese Long) v3	cmocucB0854
CmoCh04G023510	Watermelon (97103) v2	cmowmbB676
CmoCh04G023510	Wax gourd	cmowgoB0822
CmoCh04G023510	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh04G023510	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G023510	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G023510	Wild cucumber (PI 183967)	cmocpiB742
CmoCh04G023510	Wild cucumber (PI 183967)	cmocpiB751
CmoCh04G023510	Cucumber (Chinese Long) v2	cmocuB722
CmoCh04G023510	Melon (DHL92) v3.5.1	cmomeB625
CmoCh04G023510	Watermelon (Charleston Gray)	cmowcgB636
CmoCh04G023510	Watermelon (97103) v1	cmowmB707
CmoCh04G023510	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G023510	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G023510	Bottle gourd (USVL1VR-Ls)	cmolsiB610