CmoCh04G022560 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G022560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 16879432 .. 16881301 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAATCATGTTGACACATCGGTTCTGAAGCTCGGTGGTGACAGGGTACTCGTCCATATCGACGTAGTTCTTGTTGACAGAGTCCATCACCAGCTTATCGCACTCGGGCTCCATCCAAGTGGTGACGAAGGAAGCCAAATTGAGCCTGGGGTTGCCATCGAGCATGAGCTCGTCGTTGATGATCTGAAAAGCAGCCTCCTTGGGCATGGAGTTTTCGGGCATGGTGAATCTTGGAGCAGAGTCCCGCACATAGCGAGAGGCAAAGGTGGAATGGACAGAGACGTCCGATTCAGAGAAAGTCTTGGGAAGCACCATTTTTGGGTATCGTATGAATTTGAAAGAGAAAGATGAAAATTGTATGGAAATTGGTGGAGAAAGATGAATAGGGAAGGGTGGGTTTTATAGTACAAAAAGTGGAGAATCAAGCAGGGGAGGCAGGAACAAGCAGAGCAATGGGGATTGGTCAAAGAGCGTAGCGGTTTAACCATGCATTTGAAAATTCGAAATTTGGAGCTTATTGTTTTTGGATTATGCTTGATTTGAAAATGACAGTTCTTTTCCGGTGGAGGTTTTATTTGACGGTTCTTCTACATTTTTTTTTCTTTTTTTCCAAATATTTTCTTAGTCAATGTTCCTACTTTTCAACTCTTCAATTTTTAATTCTTACAAAAACATGTCTTAGTTGAATAAGAATGTAAACACAAGTGTTAGGTTGTTTTTTTTTTGTGTACGAACCACGAGCGTTCTTCTTATAATTCATTTATTATGACAATTAATATTGTTCCGTTAAAATATCTTATGATATGACTAGTTCCATTATTAAAGCCGTTAAAGTATCTTTTGGCTCTTGCTTTTTTGTCGATAAGTTCCGAGGTTTGTATGGTCTCTTTCTCCTAAGAATTGGGTTATAAAAGCTGGTATCAATTTTGTTAAGAAACCAATCAAAATATCTTCTCAATTTTCTAAACCACTCTATGATTCCTTCTATCAAAGTGAAGAAGAGTTACGTCTAATTCTTCAATTCTTCGTGTCTTCTGGATGTTATCTTGGATGATCCTATCTCTTTCCGTATCTCCAACTACTAGGCTTTCTAAGATGGACTATCGATCAAAGCCTAATCGATCACGACCAACAAGTGCTAGCCACCCTTAGCCAATAGGTATTGGGTGGCTTCGGTTTGATTTTTAATGCTTCGTCCTCTATTATAATCGTTCTTGATATTGTAATTTTTATTTTCTACCGTTTTCTCACCCTTGAATTCAATTGGCATGTTTTGTAGAAGATTGTTAGGAGTGAGTCACGCATTAGCTAATTTAAGAAATGATCATGGGTTTATAAGCAAACGAGTACATCTCTATTAACATGAGGCCTTTTGGAGAAGCTCAAAACAAAACCACGATAACTCATGCTTAAAGTGATGATTTTGTTTTATAATTAGATTGAAAGGACATGCAAGTACGCAGCCGCATGCCCCTCGTGAGATGTTAGGTCGACATGACTTAATTCCTTTTGTATTTTGGTCCAATTTTAAAAAAAAAAAAAAATTAAAAAAATACAAATTCAAAACTATCCTTATCTTTAGTACCACGTTTCAAAAATATACTTTAACTTTCAAGGGTAACGTTGAAAAGTTTAGAGATAAATTTATGAGATGTCGATAGACAGTTTTCATTCATACATGCTTAGACTGTAAGAATTTTTTAAAACTTTTTTATATAATAGTAAAGAGTATTTTTTAATATAGTAATAACCAGATATGTTTTTGAAACACTATATTATTTAAACAATATTTTTTTAAAAAAAATTAGCATTATTGAACTTAAAAGTTTAGTGGTATTTCTATATTTAGAGAAAATACAAAGTTTAA

mRNA sequence

ATGGGCAATCATGTTGACACATCGGTTCTGAAGCTCGGTGGTGACAGGGTACTCGTCCATATCGACGTAGTTCTTGTTGACAGAGTCCATCACCAGCTTATCGCACTCGGGCTCCATCCAAGTGGTGACGAAGGAAGCCAAATTGAGCCTGGGGTTGCCATCGAGCATGAGCTCGTCGTTGATGATCTGAAAAGCAGCCTCCTTGGGCATGGAGTTTTCGGGCATGGTGAATCTTGGAGCAGAGTCCCGCACATAGCGAGAGGCAAAGGTGGAATGGACAGAGACGTCCGATTCAGAGAAAGTCTTGGGAAGCACCATTTTTGGAGAAAATACAAAGTTTAA

Coding sequence (CDS)

ATGGGCAATCATGTTGACACATCGGTTCTGAAGCTCGGTGGTGACAGGGTACTCGTCCATATCGACGTAGTTCTTGTTGACAGAGTCCATCACCAGCTTATCGCACTCGGGCTCCATCCAAGTGGTGACGAAGGAAGCCAAATTGAGCCTGGGGTTGCCATCGAGCATGAGCTCGTCGTTGATGATCTGAAAAGCAGCCTCCTTGGGCATGGAGTTTTCGGGCATGGTGAATCTTGGAGCAGAGTCCCGCACATAGCGAGAGGCAAAGGTGGAATGGACAGAGACGTCCGATTCAGAGAAAGTCTTGGGAAGCACCATTTTTGGAGAAAATACAAAGTTTAA
Homology
[Close]
BLAST of CmoCh04G022560 vs. NCBI nr
Match: gi|892409667|emb|CNV68992.1| (Uncharacterised protein [Mycobacterium tuberculosis])

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 1   MGNHVDTSVLKLGGDRVLVHIDVVLVDRVHHQLIALGLHPSGDEGSQIEPGVAIEHELVV 60
           +G+H  T+ L   G RV V ID VLV+R+ HQL  L +HP G EG QI+P   +EH+LVV
Sbjct: 289 VGDHGHTARLDGRGRRVFVLIDHVLVERLGHQLFGLRVHPGGHEGGQIQPRATVEHQLVV 348

Query: 61  DDLKSSLLGHGVFGHGESWSRVPHIARGKGGMDR 95
           D+    L  H + GH +   R      G G  DR
Sbjct: 349 DEAIGRLGIHRLIGHPQRRHRCGEHPTGVGRSDR 382

The following BLAST results are available for this feature:
BLAST of CmoCh04G022560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G022560 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh04G022560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G022560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|892409667|emb|CNV68992.1|2.0e-1043.62Uncharacterised protein [Mycobacterium tuberculosis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G022560.1CmoCh04G022560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G022560Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G022560Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G022560Bottle gourd (USVL1VR-Ls)cmolsiB610
CmoCh04G022560Cucumber (Gy14) v2cgybcmoB629
CmoCh04G022560Melon (DHL92) v3.6.1cmomedB714
CmoCh04G022560Silver-seed gourdcarcmoB0648
CmoCh04G022560Silver-seed gourdcarcmoB1121
CmoCh04G022560Cucumber (Chinese Long) v3cmocucB0850
CmoCh04G022560Watermelon (97103) v2cmowmbB676
CmoCh04G022560Wax gourdcmowgoB0823
CmoCh04G022560Cucurbita moschata (Rifu)cmocmoB262
CmoCh04G022560Cucumber (Gy14) v1cgycmoB1061
CmoCh04G022560Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G022560Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G022560Wild cucumber (PI 183967)cmocpiB727
CmoCh04G022560Cucumber (Chinese Long) v2cmocuB719
CmoCh04G022560Melon (DHL92) v3.5.1cmomeB625
CmoCh04G022560Watermelon (Charleston Gray)cmowcgB636
CmoCh04G022560Watermelon (97103) v1cmowmB706