CmoCh04G021440 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G021440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cmo_Chr04 : 14906602 .. 14914959 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAACTCAATAGTACAATTACTTGCTTCTGAGAAATTAAACGGCAACAATTACACAACTTGGAAATCAAACCTAAATACAATACTTGTAATTGATGATTTGAGGTTTGTTTTAACTGAGGAATGTCCTCCAAACCCTAGCTCAAATGCAAACCGAACAGTTCGGGATGCATATGACAGATGGACAAAGGAAAATGACAAAGCCCGAGTATACATTTTAGCCAGCATATCTGATGTTTTAGCTAAGAAACACAATGTCATGGGTACTGCTAAAGAGATTATGGAATCTCTGAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGATATGACGCCATAAAATACATTTACAACTACCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGACAAAAAAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTTAGTTTTATCATGGAGTCTCTTCCGAAGAGTTTCTTCCAGTTTCGCACAAATGTGATAATGAACAAGAAAGAATATAACTTGACTGCTCTTCCCAATGAGCTACAGACTTATCAGTTCCTCTTAACGAACAAGGGACAAACAGGAGAAGCAAATGTTGCTATCTTTAAGAAATTACTACGAGGATTGTCCTCCAAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGTAAAGGGAAAAATAAGATTCTTTCTGACTGCAAACACAAGGTTCAAAAAGCACATAAAGAAAAATGTTTCCATTGCAACAAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTACAGAGAAGAAAGCCGAAAAGACACAACAAGATAAATATGATTTACTCGTTGTAGAAATATGTTTAGTAGAGTATGATAACTCAACTTGGATACTAGATTCAGGGGCCACTAATCATATTTGTTCTTTTTTCCAGGAAACTAGTTCCTGGAGAATGCTTGCGGACGACGAGATAACACTCAGGGTTGGAACAGGAGAGGTTGTCTAAGCAAGATCAGTAGGAAATTTAAAGTTGTTTTTTGGAGATAGATTCATTATATTAGATAATGTACTTTTTGTTCCTCGAATGAAAGGAAATCTAATATCTATCTCTTGTTTATTAGAACAATTGTATAAAGTATCTTTTGAAATTAATGAAGTGTTCATTTGCAAAAGAGGTATTCATATTTGTTCTGCAAAACTAGAAAACAACTTATATATGTTAAAACCGAGCGAAACAAAAGCTATTTTAAATATCGAGATGTTTAAAACAGCTGAAACTCAAAATAAACGACAAAAGATTTCTTCTAATACCTATCTTTGGCACTTAAGACTAGGCCATATTAATCTCAATAGAATTGAGAGATTGGTTAAAAGAGGACTTCTAAATGAGCTAGAAGACAACTCTTTACCTCCATGTGAGTCTTGTCTTGAGGGTAAAATGACTAAACAACCGTTTTTTGAAAAAGGTTATAGAGCCAAAGAAACCTTAGAACTTGTGCATACAGATCTCTGTGGTCCAATGAATATCAAAGCACAAGGAGGGTGTGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGACTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTGAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGGTATGTCTCAATAAAATGGTGTATCAGAAAGGAGAAATAGAACTCTATTAGACATGGTTCGGTCTATGATGAGTTTCGCTCAATTACCTGATCCGTTTTGAGGATGTGCAGTGGAAACTGCTACATACATTTTGAACATGGTTCCTTCTAAGAGTGTTTCAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGGTAGTTTACGTCACTTCAGGATTTGGGGATGTCTAGCACATGTGTTGTTGCAAAACCCCAAGAAATTAGAACGTCGTTCAAAATTATGTCTATTCGTAGGATACCCCAAAGAGACGAAAGGTGGTTTGTTTTATGACCCTCAAGAAAATAGAGTGCTTGTATCAACAAATGCTACATTCTGAGAGGAAGACCACGTAAGAAATCATCAACCTCGCAGCAAACTAGTATTAAGTGAGATTTCTAAAGAAGCTAATGATAAAACAACAAGAGTTGTTGATCAAACTGGTCCTTCAACAAGAATTGTTGATGGAGCTGGCACTTCTGGTCAATCACATCCTTCTCACGAGTTGAGAATGCCTCAACGTAGTGGGAGGGTTATAACTCAACCCGATCGTTACTTAAAACTCAAGTCATCATACCTGATGATGGCGTTGAGGATCCATTGACCTATAAACAGGCAATGAATGATGAAGATAGAGATCAGTGGATTAAAGACATGAATCTTGAAATGGAGTCAATTACTTCAATTCAGTTTGGGAACTTGTAGATNNNNNNNNNNATGGTCCATTTCAATGTGACAAAAAAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTTAGTTTTATCATGGAGTCTCTTCCGAAGAGTTTCTTCCAGTTTCGCACAAATGTGATAATGAACAAGAAAGAATATAACTTGACTGCTCTTCCCAATGAGCTACAGACTTATCAGTTCCTCTTAACGAACAAGGGACAAACAGGAGAAGCAAATGTTGCTATCTTTAAGAAATTACTACGAGGATTGTCCTCCAAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGTAAAGGGAAAAATAAGATTCTTTCTGACTGCAAACACAAGGTTCAAAAAGCACATAAAGAAAAATGTTTCCATTGCAACAAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTACAGAGAAGAAAGCCGAAAAGACACAACAAGATAAATATGATTTACTCGTTGTAGAAATATGTTTAGTAGAGTATGATAACTCAACTTGGATACTAGATTCAGGGGCCACTAATCATATTTGTTCTTTTTTCCAGGAAACTAGTTCCTGGAGAATGCTTGCGGACGACGAGATAACACTCAGGGTTGGAACAGGAGAGGTTGTCTAAGCAAGATCAGTAGGAAATTTAAAGTTGTTTTTTGGAGATAGATTCATTATATTAGATAATGTACTTTTTGTTCCTCGAATGAAAGGAAATCTAATATCTATCTCTTGTTTATTAGAACAATTGTATAAAGTATCTTTTGAAATTAATGAAGTGTTCATTTGCAAAAGAGGTATTCATATTTGTTCTGCAAAACTAGAAAACAACTTATATATGTTAAAACCGAGCGAAACAAAAGCTATTTTAAATATCGAGATGTTTAAAACAGCTGAAACTCAAAATAAACGACAAAAGATTTCTTCTAATACCTATCTTTGGCACTTAAGACTAGGCCATATTAATCTCAATAGAATTGAGAGATTGGTTAAAAGAGGACTTCTAAATGAGCTAGAAGACAACTCTTTACCTCCATGTGAGTCTTGTCTTGAGGGTAAAATGACTAAACAACCGTTTTTTGAAAAAGGTTATAGAGCCAAAGAAACCTTAGAACTTGTGCATACAGATCTCTGTGGTCCAATGAATATCAAAGCACAAGGAGGGTGTGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGACTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTGAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGGTATGTCTCAATAAAATGGTGTATCAGAAAGGAGAAATAGAACTCTATTAGACATGGTTCGGTCTATGATGAGTTTCGCTCAATTACCTGATCCGTTTTGAGGATGTGCAGTGGAAACTGCTACATACATTTTGAACATGGTTCCTTCTAAGAGTGTTTCAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGGTAGTTTACGTCACTTCAGGATTTGGGGATGTCTAGCACATGTGTTGTTGCAAAACCCCAAGAAATTAGAACGTCGTTCAAAATTATGTCTATTCGTAGGATACCCCAAAGAGACGAAAGGTGGTTTGTTTTATGACCCTCAAGAAAATAGAGTGCTTGTATCAACAAATGCTACATTCTGAGAGGAAGACCACGTAAGAAATCATCAACCTCGCAGCAAACTAGTATTAAGTGAGATTTCTAAAGAAGCTAATGATAAAACAACAAGAGTTGTTGATCAAACTGGTCCTTCAACAAGAATTGTTGATGGAGCTGGCACTTCTGGTCAATCACATCCTTCTCACGAGTTGAGAATGCCTCAACGTAGTGGGAGGGTTATAACTCAACCCGATCGTTACTTAAAACTCAAGTCATCATACCTGATGATGGCGTTGAGGATCCATTGACCTATAAACAGGCAATGAATGATGAAGATAGAGATCAGTGGATTAAAGACATGAATCTTGAAATGGAGTCAATTACTTCAATTCAGTTTGGGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACTGGTAAGGTACAGATCTTTAAAGCTCGACTTGTAGCAAAGTGTTATACCCAAAGAGAGAGGGTGGACTATGAAGAAACTTTCTCTCCTATTGCTATGCTTAAATCGATTAGAATACTCTTGTCCATTGCCACATTTTATGATTATGAAATTTGGGAAATGGATGTTAAGACAGCCTTTCTAAACGACAATCTTGAAGAGAGTATCTATATGACTCAACTAGAGGGGTTCATTGAACAGGATCGTGAGCAAAGGGTTTGCAAGCTTAAAAGATTCATTTATGGGTTAAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACTGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTAGTATTGTACGTTGACGATATCCTACTCATTCGGAATGATGTGGGATTTTTGACTGACATTAAGCATTGGCTAGCGACACAATTCTAAATGAAAGATTTGGGAGAGGCTCGGTTTGTTCTTAGAATCCAAATTGTACGGAATCGCAAGAATAAAACACTAGCATTGTCTCAGGCATCATACATTGACAAAATGTTGATTCGATATAAGATGCAGGACTCCAAGAAAGGATTATTATCTTTCAGGCATGGAGTTCATTTGTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACATATTCCCTATGCATCAGCAGTCGGTAGTCTGATGTATGCCATGCTATGTANNNNNNNNNNTTTTTTGGAGATAGATTCATTATATTAGATAATGTACTTTTTGTTCCTCGAATGAAAGGAAATCTAATATCTATCTCTTGTTTATTAGAACAATTGTATAAAGTATCTTTTGAAATTAATGAAGTGTTCATTTGCAAAAGAGGTATTCATATTTGTTCTGCAAAACTAGAAAACAACTTATATATGTTAAAACCGAGCGAAACAAAAGCTATTTTAAATATCGAGATGTTTAAAACAGCTGAAACTCAAAATAAACGACAAAAGATTTCTTCTAATACCTATCTTTGGCACTTAAGACTAGGCCATATTAATCTCAATAGAATTGAGAGATTGGTTAAAAGAGGACTTCTAAATGAGCTAGAAGACAACTCTTTACCTCCATGTGAGTCTTGTCTTGAGGGTAAAATGACTAAACAACCGTTTTTTGAAAAAGGTTATAGAGCCAAAGAAACCTTAGAACTTGTGCATACAGATCTCTGTGGTCCAATGAATATCAAAGCACAAGGAGGGTGTGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGACTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTGAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGGTATGTCTCAATAAAATGGTGTATCAGAAAGGAGAAATAGAACTCTATTAGACATGGTTCGGTCTATGATGAGTTTCGCTCAATTACCTGATCCGTTTTGAGGATGTGCAGTGGAAACTGCTACATACATTTTGAACATGGTTCCTTCTAAGAGTGTTTCAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGGTAGTTTACGTCACTTCAGGATTTGGGGATGTCTAGCACATGTGTTGTTGCAAAACCCCAAGAAATTAGAACGTCGTTCAAAATTATGTCTATTCGTAGGATACCCCAAAGAGACGAAAGGTGGTTTGTTTTATGACCCTCAAGAAAATAGAGTGCTTGTATCAACAAATGCTACATTCTGAGAGGAAGACCACGTAAGAAATCATCAACCTCGCAGCAAACTAGTATTAAGTGAGATTTCTAAAGAAGCTAATGATAAAACAACAAGAGTTGTTGATCAAACTGGTCCTTCAACAAGAATTGTTGATGGAGCTGGCACTTCTGGTCAATCACATCCTTCTCACGAGTTGAGAATGCCTCAACGTAGTGGGAGGGTTATAACTCAACCCGATCGTTACTTAAAACTCAAGTCATCATACCTGATGATGGCGTTGAGGATCCATTGACCTATAAACAGGCAATGAATGATGAAGATAGAGATCAGTGGATTAAAGACATGAATCTTGAAATGGAGTCAATTACTTCAATTCAGTTTGGGAACTTGTAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACTGGTAAGGTACAGATCTTTAAAGCTCGACTTGTAGCAAAGTGTTATACCCAAAGAGAGAGGGTGGACTATGAAGAAACTTTCTCTCCTATTGCTATGCTTAAATCGATTAGAATACTCTTGTCCATTGCCACATTTTATGATTATGAAATTTGGGAAATGGATGTTAAGACAGCCTTTCTAAACGACAATCTTGAAGAGAGTATCTATATGACTCAACTAGAGGGGTTCATTGAACAGGATCGTGAGCAAAGGGTTTGCAAGCTTAAAAGATTCATTTATGGGTTAAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACTGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTAGTATTGTACGTTGACGATATCCTACTCATTCGGAATGATGTGGGATTTTTGACTGACATTAAGCATTGGCTAGCGACACAATTCTAAATGAAAGATTTGGGAGAGGCTCGGTTTGTTCTTAGAATCCAAATTGTACGGAATCGCAAGAATAAAACACTAGCATTGTCTCAGGCATCATACATTGACAAAATGTTGATTCGATATAAGATGCAGGACTCCAAGAAAGGATTATTATCTTTCAGGCATGGAGTTCATTTGTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACATATTCCCTATGCATCAGCAGTCGGTAGTCTGATGTATGCCATGCTATGTACCCAACCCGACATATGCTATGCTATTGGAATTGTCAGCAGATATCAGTCCAATTCGGGGCATGCTCATTGGACTGCTGTTAAGAATATCCTCAAGTATCTTCGGAGAACGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACAGGGTACACTGACTCAGATTTTCAGACCGATGTAGATTCAAGGAAATCGACATCAGAATCTGTCTTCACTCTGAACGGAGGAGCAATAATATGGAGAAGCATAAAGCAAGGTTGCATTGCTAATTCCACCATGGAGGCTGAGTATGTTGCTGTTTATGAAGCAGCGAAAGAATCTGTATGGCATAGGAAGTTCTTAACTCATTTGGAAGTCGTTCCAAATATGCATCTTCCCGTCACTCTTTATTGTGATAACAGTGGAGCAGTTGCAAATTCAAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAGCGCAAATATCATCTCATAAGGGAGATTGTGCAATGA

mRNA sequence

ATGACAAACTCAATAGTACAATTACTTGCTTCTGAGAAATTAAACGGCAACAATTACACAACTTGGAAATCAAACCTAAATACAATACTTGTAATTGATGATTTGAGGTTTGTTTTAACTGAGGAATGTCCTCCAAACCCTAGCTCAAATGCAAACCGAACAGTTCGGGATGCATATGACAGATGGACAAAGGAAAATGACAAAGCCCGAGTATACATTTTAGCCAGCATATCTGATGTTTTAGCTAAGAAACACAATGTCATGGGTACTGCTAAAGAGATTATGGAATCTCTGAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGATATGACGCCATAAAATACATTTACAACTACCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGACAAAAAAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTTAGTTTTATCATGGAGTCTCTTCCGAAGAGTTTCTTCCAGTTTCGCACAAATGTGATAATGAACAAGAAAGAATATAACTTGACTGCTCTTCCCAATGAGCTACAGACTTATCAGTTCCTCTTAACGAACAAGGGACAAACAGGAGAAGCAAATGTTGCTATCTTTAAGAAATTACTACGAGGATTGTCCTCCAAAAATAAGTATGACTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTGAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGTGGAAACTGCTACATACATTTTGAACATGGTTCCTTCTAAGAGTGTTTCAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGGTTATAGAGCCAAAGAAACCTTAGAACTTGTGCATACAGATCTCTGTGGTCCAATGAATATCAAAGCACAAGGAGGGTGTGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGACTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTGAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGTGGAAACTGCTACATACATTTTGAACATGGTTCCTTCTAAGAGTGTTTCAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACTGGTAAGGTACAGATCTTTAAAGCTCGACTTGTAGCAAAGTGTTATACCCAAAGAGAGAGGGTGGACTATGAAGAAACTTTCTCTCCTATTGCTATGCTTAAATCGATTAGAATACTCTTGTCCATTGCCACATTTTATGATTATGAAATTTGGGAAATGGATGTTAAGACAGCCTTTCTAAACGACAATCTTGAAGAGAGTATCTATATGACTCAACTAGAGGGGTTCATTGAACAGGATCGTGAGCAAAGGGTTTGCAAGCTTAAAAGATTCATTTATGGGTTAAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACTGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTAGTATTGTATGACTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTGAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGTGGAAACTGCTACATACATTTTGAACATGGTTCCTTCTAAGAGTGTTTCAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACTGGTAAGGACTCCAAGAAAGGATTATTATCTTTCAGGCATGGAGTTCATTTGTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACATATTCCCTATGCATCAGCAGTCGGTAGTCTGATGTATGCCATGCTATGTACCCAACCCGACATATGCTATGCTATTGGAATTGTCAGCAGATATCAGTCCAATTCGGGGCATGCTCATTGGACTGCTGTTAAGAATATCCTCAAGTATCTTCGGAGAACGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACAGGGTACACTGACTCAGATTTTCAGACCGATGTAGATTCAAGGAAATCGACATCAGAATCTGTCTTCACTCTGAACGGAGGAGCAATAATATGGAGAAGCATAAAGCAAGGTTGCATTGCTAATTCCACCATGGAGGCTGAGTATGTTGCTGTTTATGAAGCAGCGAAAGAATCTGTATGGCATAGGAAGTTCTTAACTCATTTGGAAGTCGTTCCAAATATGCATCTTCCCGTCACTCTTTATTGTGATAACAGTGGAGCAGTTGCAAATTCAAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAGCGCAAATATCATCTCATAAGGGAGATTGTGCAATGA

Coding sequence (CDS)

ATGACAAACTCAATAGTACAATTACTTGCTTCTGAGAAATTAAACGGCAACAATTACACAACTTGGAAATCAAACCTAAATACAATACTTGTAATTGATGATTTGAGGTTTGTTTTAACTGAGGAATGTCCTCCAAACCCTAGCTCAAATGCAAACCGAACAGTTCGGGATGCATATGACAGATGGACAAAGGAAAATGACAAAGCCCGAGTATACATTTTAGCCAGCATATCTGATGTTTTAGCTAAGAAACACAATGTCATGGGTACTGCTAAAGAGATTATGGAATCTCTGAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGATATGACGCCATAAAATACATTTACAACTACCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGACAAAAAAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTTAGTTTTATCATGGAGTCTCTTCCGAAGAGTTTCTTCCAGTTTCGCACAAATGTGATAATGAACAAGAAAGAATATAACTTGACTGCTCTTCCCAATGAGCTACAGACTTATCAGTTCCTCTTAACGAACAAGGGACAAACAGGAGAAGCAAATGTTGCTATCTTTAAGAAATTACTACGAGGATTGTCCTCCAAAAATAAGTATGACTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTGAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGTGGAAACTGCTACATACATTTTGAACATGGTTCCTTCTAAGAGTGTTTCAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGGTTATAGAGCCAAAGAAACCTTAGAACTTGTGCATACAGATCTCTGTGGTCCAATGAATATCAAAGCACAAGGAGGGTGTGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGACTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTGAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGTGGAAACTGCTACATACATTTTGAACATGGTTCCTTCTAAGAGTGTTTCAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACTGGTAAGGTACAGATCTTTAAAGCTCGACTTGTAGCAAAGTGTTATACCCAAAGAGAGAGGGTGGACTATGAAGAAACTTTCTCTCCTATTGCTATGCTTAAATCGATTAGAATACTCTTGTCCATTGCCACATTTTATGATTATGAAATTTGGGAAATGGATGTTAAGACAGCCTTTCTAAACGACAATCTTGAAGAGAGTATCTATATGACTCAACTAGAGGGGTTCATTGAACAGGATCGTGAGCAAAGGGTTTGCAAGCTTAAAAGATTCATTTATGGGTTAAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACTGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTAGTATTGTATGACTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTGAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGTGGAAACTGCTACATACATTTTGAACATGGTTCCTTCTAAGAGTGTTTCAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACTGGTAAGGACTCCAAGAAAGGATTATTATCTTTCAGGCATGGAGTTCATTTGTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAGACATATTCCCTATGCATCAGCAGTCGGTAGTCTGATGTATGCCATGCTATGTACCCAACCCGACATATGCTATGCTATTGGAATTGTCAGCAGATATCAGTCCAATTCGGGGCATGCTCATTGGACTGCTGTTAAGAATATCCTCAAGTATCTTCGGAGAACGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACAGGGTACACTGACTCAGATTTTCAGACCGATGTAGATTCAAGGAAATCGACATCAGAATCTGTCTTCACTCTGAACGGAGGAGCAATAATATGGAGAAGCATAAAGCAAGGTTGCATTGCTAATTCCACCATGGAGGCTGAGTATGTTGCTGTTTATGAAGCAGCGAAAGAATCTGTATGGCATAGGAAGTTCTTAACTCATTTGGAAGTCGTTCCAAATATGCATCTTCCCGTCACTCTTTATTGTGATAACAGTGGAGCAGTTGCAAATTCAAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAGCGCAAATATCATCTCATAAGGGAGATTGTGCAATGA

Homology

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BLAST of CmoCh04G021440 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 8.0e-49
Identity = 99/200 (49.50%), Postives = 134/200 (67.00%), Query Frame = 1


Query: 736  LSKEQSPKTPQEVEDMRHIPYASAVGSLMYAMLCTQPDICYAIGIVSRYQSNSGHAHWTA 795
            LSK+  P T +E  +M  +PY+SAVGSLMYAM+CT+PDI +A+G+VSR+  N G  HW A
Sbjct: 1091 LSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEA 1150

Query: 796  VKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKSTSESVFTLNGGAIIWRSI 855
            VK IL+YLR T    L +G  D IL GYTD+D   D+D+RKS++  +FT +GGAI W+S 
Sbjct: 1151 VKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSK 1210

Query: 856  KQGCIANSTMEAEYVAVYEAAKESVWHRKFLTHLEVVPNMHLPVTLYCDNSGAVANSKEP 915
             Q C+A ST EAEY+A  E  KE +W ++FL  L +    ++   +YCD+  A+  SK  
Sbjct: 1211 LQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAIDLSKNS 1270

Query: 916  RSHKRGKHIERKYHLIREIV 936
              H R KHI+ +YH IRE+V
Sbjct: 1271 MYHARTKHIDVRYHWIREMV 1287

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BLAST of CmoCh04G021440 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-30
Identity = 72/186 (38.71%), Postives = 111/186 (59.68%), Query Frame = 1


Query: 755  PYASAVGSLMYAMLCTQPDICYAIGIVSRYQSNSGHAHWTAVKNILKYLRRTRDYMLMYG 814
            P  S +G LMY MLCT+PD+  A+ I+SRY S +    W  +K +L+YL+ T D  L++ 
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1239

Query: 815  ---AKDLILTGYTDSDFQTDVDSRKSTSESVFTL-NGGAIIWRSIKQGCIANSTMEAEYV 874
               A +  + GY DSD+      RKST+  +F + +   I W + +Q  +A S+ EAEY+
Sbjct: 1240 KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYM 1299

Query: 875  AVYEAAKESVWHRKFLTHLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHL 934
            A++EA +E++W +  LT + +   +  P+ +Y DN G ++ +  P  HKR KHI+ KYH 
Sbjct: 1300 ALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHF 1359

Query: 935  IREIVQ 937
             RE VQ
Sbjct: 1360 AREQVQ 1363

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BLAST of CmoCh04G021440 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-09
Identity = 50/170 (29.41%), Postives = 84/170 (49.41%), Query Frame = 1


Query: 520 MDVKTAFLNDNLEESIYMTQLEGFIEQDREQRVCKLKRFIYGLKQASRSWNIKFDTAIKS 579
           MDV TAFLN  ++E IY+ Q  GF+ +     V +L   +YGLKQA   WN   +  +K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 580 YGFKQNVDEPCVYKRIVNSTVAFLVLY-DYLYLMHHKSEALEKFREYKTEVENL--LGKT 639
            GF ++  E  +Y R  +    ++ +Y D L +     +  ++ ++  T++ ++  LGK 
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 640 IKTL-----RSDRGGEYMDLRFQDYMIEHGIRSQLSAPVETATYILNMVP 682
            K L     +S  G   + L  QDY+ +    S+++    T T + N  P
Sbjct: 121 DKFLGLNIHQSSNGD--ITLSLQDYIAKAASESEINTFKLTQTPLCNSKP 168

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BLAST of CmoCh04G021440 vs. Swiss-Prot
Match: YD22B_YEAST (Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR2 PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-06
Identity = 30/104 (28.85%), Postives = 50/104 (48.08%), Query Frame = 1


Query: 314 KGYRAK-----ETLELVHTDLCGPMNIKAQGGCEYFISFIDDYSRYDYLYLMHHKSE--A 373
           KG R K     E  + +HTD+ GP++   +    YFISF D+ +R+ ++Y +H + E   
Sbjct: 648 KGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESI 707

Query: 374 LEKFREYKTEVENLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGI 411
           L  F      ++N     +  ++ DRG EY +     +    GI
Sbjct: 708 LNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGI 751

[Close]

BLAST of CmoCh04G021440 vs. Swiss-Prot
Match: YD23B_YEAST (Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR3 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-06
Identity = 30/104 (28.85%), Postives = 50/104 (48.08%), Query Frame = 1


Query: 314 KGYRAK-----ETLELVHTDLCGPMNIKAQGGCEYFISFIDDYSRYDYLYLMHHKSE--A 373
           KG R K     E  + +HTD+ GP++   +    YFISF D+ +R+ ++Y +H + E   
Sbjct: 648 KGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESI 707

Query: 374 LEKFREYKTEVENLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGI 411
           L  F      ++N     +  ++ DRG EY +     +    GI
Sbjct: 708 LNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGI 751

[Close]

BLAST of CmoCh04G021440 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 1.7e-151
Identity = 295/494 (59.72%), Postives = 352/494 (71.26%), Query Frame = 1


Query: 446  DQPDGVKPIGCKWIYKRKRDQTGKVQIFKARLVAKCYTQRERVDYEETFSPIAMLKSIRI 505
            D P  VKPIGCKWIYKRKRDQ GKVQ FKARLVAK YTQ+E VDYEETFSP+AMLKSIRI
Sbjct: 841  DLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGVDYEETFSPVAMLKSIRI 900

Query: 506  LLSIATFYDYEIWEMDVKTAFLNDNLEESIYMTQLEGFIEQDREQRVCKLKRFIYGLKQA 565
            LLSIATFY+YEIW+MDVKTAFLN NLEESIYM Q EGFI QD+EQ+VCKL++        
Sbjct: 901  LLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQK-------- 960

Query: 566  SRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYDYLYLMHHKSEALEKFREY 625
                          YG KQ             ++ ++ + +D     +   + +++   Y
Sbjct: 961  ------------SIYGLKQ-------------ASRSWNIRFDTAIKSYGFEQNVDEPCVY 1020

Query: 626  KTEVENLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPVETATYILNMVPSKSV 685
            K  V +++              ++ L   D ++   I + +    +   ++      K +
Sbjct: 1021 KKIVNSVVA-------------FLILYVDDILL---IGNDVEYLTDVKKWLNTQFQMKDL 1080

Query: 686  SETPY----ELWKGRKDQPDGVKPIGCKWIYKRKRDQTGKDSKKGLLSFRHGVHLSKEQS 745
             E  Y    ++ + RK++   +      +I K       ++SKKG L FRHG+HLSKEQ 
Sbjct: 1081 GEAQYILGIQIVRNRKNKTLAMSQ--ASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQC 1140

Query: 746  PKTPQEVEDMRHIPYASAVGSLMYAMLCTQPDICYAIGIVSRYQSNSGHAHWTAVKNILK 805
            PKTPQEVEDMR+IPY+SAVGSLMYAMLCT+PDICY++GIVSRYQSN G  HWTAVKNILK
Sbjct: 1141 PKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILK 1200

Query: 806  YLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKSTSESVFTLNGGAIIWRSIKQGCIA 865
            YLRRTR+YML+YGAKDLILTGYTDSDFQ+D D+RKSTS SVFTLNGGA++WRS+KQ CIA
Sbjct: 1201 YLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIA 1260

Query: 866  NSTMEAEYVAVYEAAKESVWHRKFLTHLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRG 925
            +STMEAEYVA  EAAKE+VW RKFLT LEVVPNMHLP+TLYCDNSGAVANSKEPRSHKRG
Sbjct: 1261 DSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHKRG 1283

Query: 926  KHIERKYHLIREIV 936
            KHIERKYHLIREIV
Sbjct: 1321 KHIERKYHLIREIV 1283

[Close]

BLAST of CmoCh04G021440 vs. TrEMBL
Match: Q2QUJ4_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g16060 PE=4 SV=2)

HSP 1 Score: 411.0 bits (1055), Expect = 3.9e-111
Identity = 276/735 (37.55%), Postives = 393/735 (53.47%), Query Frame = 1


Query: 253  TIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAP-------------------------- 312
            TIK LRSDRGGEY+ L F +++ E GI  QL+ P                          
Sbjct: 354  TIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDIVRSMMSQ 413

Query: 313  -----------VETATYILNMVPSKSVSETPYELWKGR-------KGYRAKETLELVHTD 372
                       +E A + LN VPSKSV++TPYE+W G+       K +  +  ++ + +D
Sbjct: 414  TDLPLSFWAYALEKAAFTLNKVPSKSVNKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSD 473

Query: 373  LCGPMNIKAQGGCEYFISFIDD------YSRYDYLYLMHHKSEALEKFREYKTEVENLLG 432
               P + K      +F+ +  +      Y+R +    +      LEK    +    ++L 
Sbjct: 474  KLTPKSDKC-----FFVGYPKETKGYYFYNREEGKVFVARHGVFLEKEFILRKNSGSMLW 533

Query: 433  KTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPVETATYILNMVPSKSVSETPYELWK 492
            K    L     G  + LR  D    +          E A   L  + S+  S    ++W 
Sbjct: 534  K--HQLHEGPKGYGVHLRENDEPTTY----------EEAMVGLGAMKSEIESMHVNQVWN 593

Query: 493  GRKDQPDGVKPIGCKWIYKRKRDQTGKVQIFKARLVAKCYTQRERVDYEETFSPIAMLKS 552
               D PDGVK I  KW++K+K D  G V I+KARLVAK + Q + VDY+ETFS +AMLKS
Sbjct: 594  -LVDPPDGVKAIEWKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSLVAMLKS 653

Query: 553  IRILLSIATFYDYEIWEMDVKTAFLNDNLEESIYMTQLEGFIEQDREQRVCKLKRFIYGL 612
            I+I+L+I  ++DYEIW+MDVKTAF+N N++E +YMTQL+GF++    +++CKL++ IYGL
Sbjct: 654  IQIVLAITAYFDYEIWQMDVKTAFVNGNIDEDVYMTQLKGFVDPQSAKKICKLQKSIYGL 713

Query: 613  KQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLY-DYLYLMHHKSEALEK 672
            KQASRSWNI+FD  +K++               ++ T   LVLY D + L+ +    LE 
Sbjct: 714  KQASRSWNIRFDEVVKAWA--------------LSKTKKSLVLYVDDILLIGNDIPMLE- 773

Query: 673  FREYKTEVENLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPVETATYILNMVP 732
                KT ++N           D G     L  + Y      RS+    +  +TYI  ++ 
Sbjct: 774  --SVKTSLKNSFS------MKDLGEAAYILGIRIYR----DRSKRLIGLSQSTYIDKVLK 833

Query: 733  SKSVSETPYELWKGRKDQPDGVKPIGCKWIYKRKRDQTGKDSKKGLLSFRHGVHLSKEQS 792
              ++ ++     KG      G+       + K +  QT  +  K                
Sbjct: 834  RFNMQDSK----KGFLPMSHGIN------LGKNQCPQTTDERNK---------------- 893

Query: 793  PKTPQEVEDMRHIPYASAVGSLMYAMLCTQPDICYAIGIVSRYQSNSGHAHWTAVKNILK 852
                     M  IPYASA+GS+MYAMLCT PD+ YA+   SRYQS+ G +HW AVKNILK
Sbjct: 894  ---------MSVIPYASAIGSIMYAMLCTHPDVSYALSATSRYQSDPGESHWIAVKNILK 953

Query: 853  YLRRTRDYMLMYGA-KDLILTGYTDSDFQTDVDSRKSTSESVFTLNGGAIIWRSIKQGCI 912
            YLRRT+D  L+YG  ++L++ GYTD+ FQTD D  +S S  VF LNGGA+ W+S KQ  +
Sbjct: 954  YLRRTKDMFLVYGGQEELVVKGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTV 1007

Query: 913  ANSTMEAEYVAVYEAAKESVWHRKFLTHLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKR 936
             +S  EAEY+A  EAAKE+VW +KF++ L V+ +   P+ LYCDNSGA+A +KEPRSH++
Sbjct: 1014 VDSITEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLYCDNSGAIAQAKEPRSHQK 1007

[Close]

BLAST of CmoCh04G021440 vs. TrEMBL
Match: Q53K55_ORYSJ (Retrotransposon protein, putative, Ty1-copia sub-class OS=Oryza sativa subsp. japonica GN=LOC_Os11g23750 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 4.9e-106
Identity = 247/616 (40.10%), Postives = 337/616 (54.71%), Query Frame = 1


Query: 317 RAKETLELVHTDLCGPMNIKAQGGCEYFISFIDDYSRYDYLYLMHHKSEALEKFREYKTE 376
           +A E L LVHTD+CGPM+  A+GG  YFI+F +D+SRY Y+YLM HKS++ EKF+E++ E
Sbjct: 376 KASELLGLVHTDVCGPMSSTARGGFGYFITFTNDFSRYGYVYLMRHKSDSFEKFKEFQNE 435

Query: 377 VENLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPVE----------------- 436
           V+N LGKTIK LRSDRGGEY+ L F +++ E GI  QL+ P                   
Sbjct: 436 VQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDM 495

Query: 437 --------------------TATYILNMVPSKSVSETPYELWKGRKDQPDGVKPIGCKWI 496
                               TA + LN VPSKSV +TPYE+W G++     +K  GC+  
Sbjct: 496 VRSMMSQTDLPLSFWGYTLETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEET 555

Query: 497 YKRKRDQTGKVQIFKARLVAKCYTQRERVDYEETFSPIAMLKSIRILLSIA--------- 556
            +     T   Q  +         Q E+V  E      A  +S RI  + A         
Sbjct: 556 PENASTSTQPQQAEQ-----DVVQQVEQVVVEPVVEAPASRRSERIRRTPASCGSTGFTK 615

Query: 557 ----TFYDYEIWEMDVKTAFLNDNLEESIYMTQLEGFIEQDREQRVCKLKRFIYGLKQAS 616
               T Y  +IW+MDVKTAFLN NL+E +YMTQ +GF++    +++CKL++ IYGLKQAS
Sbjct: 616 VRKDTTYTCKIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQAS 675

Query: 617 RSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLY-DYLYLMHHKSEALEKFREY 676
           RSWNI FD  +K+ GF +N  EPCVYK+I  S + FL+LY D + L+ +    LE     
Sbjct: 676 RSWNIHFDEIVKALGFVKNEQEPCVYKKISGSALVFLILYVDDILLIENDIPMLE---SV 735

Query: 677 KTEVENLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPVETATYILNMVPSKSV 736
           KT ++N           D G     L  + Y      RS+    +  +TYI  ++   ++
Sbjct: 736 KTSLKNSFS------MKDLGEAAYILGIRIYK----DRSKRLIGLSQSTYIDKVLKRFNM 795

Query: 737 SETPYELWKGRKDQPDGVKPIGCKWIYKRKRDQTGKDSKKGLLSFRHGVHLSKEQSPKTP 796
            ++     KG      G+       + K +  QT  +  K                    
Sbjct: 796 QDSK----KGFLPMSHGIN------LGKNQCPQTTNERNK-------------------- 855

Query: 797 QEVEDMRHIPYASAVGSLMYAMLCTQPDICYAIGIVSRYQSNSGHAHWTAVKNILKYLRR 856
                M  IPYASA+GS+MYAMLCT+PD+ YA+   S+YQS+ G +HW A+KNILKYLRR
Sbjct: 856 -----MSVIPYASAIGSIMYAMLCTRPDVSYALSATSQYQSDPGESHWIALKNILKYLRR 915

Query: 857 TRDYMLMYGA-KDLILTGYTDSDFQTDVDSRKSTSESVFTLNGGAIIWRSIKQGCIANST 881
           T+D  L+YG  ++L++ GYTD+ FQ D D  +S S  VF LNGGA+ W+S KQ  +A+ST
Sbjct: 916 TKDMFLVYGGQEELVVNGYTDASFQIDKDDFRSQSGFVFYLNGGAVSWKSSKQDTVADST 938

[Close]

BLAST of CmoCh04G021440 vs. TrEMBL
Match: Q5R1J2_ORYSJ (Integrase core domain, putative OS=Oryza sativa subsp. japonica GN=LOC_Os11g18580 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.6e-101
Identity = 218/477 (45.70%), Postives = 295/477 (61.84%), Query Frame = 1


Query: 461  KRKRDQTGKVQIFKARLVAKCYTQRERVDYEETFSPIAMLKSIRILLSIATFYDYEIWEM 520
            K+K D  G V I+KARLVAK + Q + VDY+ETFSP+AMLK I I+L+IA ++DYEIW+M
Sbjct: 717  KKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKFIWIVLAIAAYFDYEIWQM 776

Query: 521  DVKTAFLNDNLEESIYMTQLEGFIEQDREQRVCKLKRFIYGLKQASRSWNIKFDTAIKSY 580
             VKTAFLN NL+E +YMTQ +GF +    +++CKL + IYGLKQASRSWNI+FD  +K+ 
Sbjct: 777  YVKTAFLNGNLDEDVYMTQPKGFDDPQSAKKICKLHQSIYGLKQASRSWNIRFDEVVKAL 836

Query: 581  GFKQNVDEPCVYKRIVNSTVAFLVLY-DYLYLMHHKSEALEKFREYKTEVENLLGKTIKT 640
            GF +N +EPCVYK+I  S + FL+LY D + L+ +    LE     KT ++N        
Sbjct: 837  GFVRNEEEPCVYKKISGSALVFLILYVDDILLIGNDISMLE---SVKTSLKNSFS----- 896

Query: 641  LRSDRGGEYMDLRFQDYMIEHGIRSQLSAPVETATYILNMVPSKSVSETPYELWKGRKDQ 700
               D G     L  + Y      RS+    +  +TYI  ++   ++ ++     KG    
Sbjct: 897  -MKDLGEAAYILGIRIYR----DRSKRLIGLSQSTYIDKVLKRFNMQDSK----KGFLPM 956

Query: 701  PDGVKPIGCKWIYKRKRDQTGKDSKKGLLSFRHGVHLSKEQSPKTPQEVEDMRHIPYASA 760
              G+       + K +  QT  +  K                         M  IPYASA
Sbjct: 957  SHGIN------LGKNQCPQTTDERNK-------------------------MSVIPYASA 1016

Query: 761  VGSLMYAMLCTQPDICYAIGIVSRYQSNSGHAHWTAVKNILKYLRRTRDYMLMYGA-KDL 820
            +GS+MYAMLCT+PD+ YA+   SRYQS+ G +HW AVKNILKYLRRT+D  L YG  ++L
Sbjct: 1017 IGSIMYAMLCTRPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMFLAYGGQEEL 1076

Query: 821  ILTGYTDSDFQTDVDSRKSTSESVFTLNGGAIIWRSIKQGCIANSTMEAEYVAVYEAAKE 880
            ++ GYTD+ FQ D D  +S S  VF LNGGA+ W+S KQ  + +ST EAEY+    AA E
Sbjct: 1077 VVNGYTDASFQIDKDDFRSQSGFVFCLNGGAVSWKSSKQDIVVDSTTEAEYI----AASE 1136

Query: 881  SVWHRKFLTHLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIV 936
            +VW +KF++ L V+ +    + LYCDNSGA+A +KEPRSH++ KHI R+YHLIREIV
Sbjct: 1137 AVWIKKFVSQLGVMTSASSSMDLYCDNSGAIAQAKEPRSHQKSKHILRQYHLIREIV 1141

[Close]

BLAST of CmoCh04G021440 vs. TrEMBL
Match: A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.8e-92
Identity = 171/217 (78.80%), Postives = 189/217 (87.10%), Query Frame = 1


Query: 721  KDSKKGLLSFRHGVHLSKEQSPKTPQEVEDMRHIPYASAVGSLMYAMLCTQPDICYAIGI 780
            +DSKKGLL FRHG+HLSKEQ PKTPQEVEDMR+IPY+SA+GSLMYAMLCT+PD+CYA+ I
Sbjct: 1085 QDSKKGLLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAIGSLMYAMLCTRPDVCYALSI 1144

Query: 781  VSRYQSNSGHAHWTAVKNILKYLRRTRDYMLMYGA-KDLILTGYTDSDFQTDVDSRKSTS 840
            VSRYQSN G  HWTAVKNILKYLRRTR+  L+YG  KDL + GYTDS FQTD D  KS S
Sbjct: 1145 VSRYQSNPGRDHWTAVKNILKYLRRTRNMFLVYGGDKDLAVKGYTDSSFQTDKDDSKSQS 1204

Query: 841  ESVFTLNGGAIIWRSIKQGCIANSTMEAEYVAVYEAAKESVWHRKFLTHLEVVPNMHLPV 900
              VFTLNGGA+ WRS KQ C+A+ST EAEYVA  EAAKE+VW RKFLT L VVPNMHLP+
Sbjct: 1205 -GVFTLNGGAVSWRSSKQTCVADSTCEAEYVAACEAAKEAVWIRKFLTDLGVVPNMHLPI 1264

Query: 901  TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQ 937
            TLYCDNSGAVAN+KEPRSHKRGKHIERKYHLIREIV+
Sbjct: 1265 TLYCDNSGAVANAKEPRSHKRGKHIERKYHLIREIVE 1300

[Close]

BLAST of CmoCh04G021440 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 139.8 bits (351), Expect = 8.5e-33
Identity = 69/181 (38.12%), Postives = 112/181 (61.88%), Query Frame = 1


Query: 448 PDGVKPIGCKWIYKRKRDQTGKVQIFKARLVAKCYTQRERVDYEETFSPIAMLKSIRILL 507
           P   KPIGCKW+YK K +  G ++ +KARLVAK YTQ+E +D+ ETFSP+  L S++++L
Sbjct: 121 PPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLIL 180

Query: 508 SIATFYDYEIWEMDVKTAFLNDNLEESIYMTQLEGFIEQDRE----QRVCKLKRFIYGLK 567
           +I+  Y++ + ++D+  AFLN +L+E IYM    G+  +  +      VC LK+ IYGLK
Sbjct: 181 AISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLK 240

Query: 568 QASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNST-VAFLVLYDYLYLMHHKSEALEKF 624
           QASR W +KF   +  +GF Q+  +   + +I  +  +  LV  D + +  +   A+++ 
Sbjct: 241 QASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDEL 300

[Close]

BLAST of CmoCh04G021440 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-07
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 454 IGCKWIYKRKRDQTGKVQIFKARLVAKCYTQRERVDYEETFSPIAMLKSIRILLSIA 511
           +GCKW++K K    G +   KARLVAK + Q E + + ET+SP+    +IR +L++A
Sbjct: 69  LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of CmoCh04G021440 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 545.0 bits (1403), Expect = 2.5e-151
Identity = 295/494 (59.72%), Postives = 352/494 (71.26%), Query Frame = 1


Query: 446  DQPDGVKPIGCKWIYKRKRDQTGKVQIFKARLVAKCYTQRERVDYEETFSPIAMLKSIRI 505
            D P  VKPIGCKWIYKRKRDQ GKVQ FKARLVAK YTQ+E VDYEETFSP+AMLKSIRI
Sbjct: 841  DLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGVDYEETFSPVAMLKSIRI 900

Query: 506  LLSIATFYDYEIWEMDVKTAFLNDNLEESIYMTQLEGFIEQDREQRVCKLKRFIYGLKQA 565
            LLSIATFY+YEIW+MDVKTAFLN NLEESIYM Q EGFI QD+EQ+VCKL++        
Sbjct: 901  LLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQK-------- 960

Query: 566  SRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYDYLYLMHHKSEALEKFREY 625
                          YG KQ             ++ ++ + +D     +   + +++   Y
Sbjct: 961  ------------SIYGLKQ-------------ASRSWNIRFDTAIKSYGFEQNVDEPCVY 1020

Query: 626  KTEVENLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPVETATYILNMVPSKSV 685
            K  V +++              ++ L   D ++   I + +    +   ++      K +
Sbjct: 1021 KKIVNSVVA-------------FLILYVDDILL---IGNDVEYLTDVKKWLNTQFQMKDL 1080

Query: 686  SETPY----ELWKGRKDQPDGVKPIGCKWIYKRKRDQTGKDSKKGLLSFRHGVHLSKEQS 745
             E  Y    ++ + RK++   +      +I K       ++SKKG L FRHG+HLSKEQ 
Sbjct: 1081 GEAQYILGIQIVRNRKNKTLAMSQ--ASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQC 1140

Query: 746  PKTPQEVEDMRHIPYASAVGSLMYAMLCTQPDICYAIGIVSRYQSNSGHAHWTAVKNILK 805
            PKTPQEVEDMR+IPY+SAVGSLMYAMLCT+PDICY++GIVSRYQSN G  HWTAVKNILK
Sbjct: 1141 PKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILK 1200

Query: 806  YLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKSTSESVFTLNGGAIIWRSIKQGCIA 865
            YLRRTR+YML+YGAKDLILTGYTDSDFQ+D D+RKSTS SVFTLNGGA++WRS+KQ CIA
Sbjct: 1201 YLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIA 1260

Query: 866  NSTMEAEYVAVYEAAKESVWHRKFLTHLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRG 925
            +STMEAEYVA  EAAKE+VW RKFLT LEVVPNMHLP+TLYCDNSGAVANSKEPRSHKRG
Sbjct: 1261 DSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDNSGAVANSKEPRSHKRG 1283

Query: 926  KHIERKYHLIREIV 936
            KHIERKYHLIREIV
Sbjct: 1321 KHIERKYHLIREIV 1283

[Close]

BLAST of CmoCh04G021440 vs. NCBI nr
Match: gi|108862437|gb|ABA97342.2| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 411.0 bits (1055), Expect = 5.6e-111
Identity = 276/735 (37.55%), Postives = 393/735 (53.47%), Query Frame = 1


Query: 253  TIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAP-------------------------- 312
            TIK LRSDRGGEY+ L F +++ E GI  QL+ P                          
Sbjct: 354  TIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDIVRSMMSQ 413

Query: 313  -----------VETATYILNMVPSKSVSETPYELWKGR-------KGYRAKETLELVHTD 372
                       +E A + LN VPSKSV++TPYE+W G+       K +  +  ++ + +D
Sbjct: 414  TDLPLSFWAYALEKAAFTLNKVPSKSVNKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSD 473

Query: 373  LCGPMNIKAQGGCEYFISFIDD------YSRYDYLYLMHHKSEALEKFREYKTEVENLLG 432
               P + K      +F+ +  +      Y+R +    +      LEK    +    ++L 
Sbjct: 474  KLTPKSDKC-----FFVGYPKETKGYYFYNREEGKVFVARHGVFLEKEFILRKNSGSMLW 533

Query: 433  KTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPVETATYILNMVPSKSVSETPYELWK 492
            K    L     G  + LR  D    +          E A   L  + S+  S    ++W 
Sbjct: 534  K--HQLHEGPKGYGVHLRENDEPTTY----------EEAMVGLGAMKSEIESMHVNQVWN 593

Query: 493  GRKDQPDGVKPIGCKWIYKRKRDQTGKVQIFKARLVAKCYTQRERVDYEETFSPIAMLKS 552
               D PDGVK I  KW++K+K D  G V I+KARLVAK + Q + VDY+ETFS +AMLKS
Sbjct: 594  -LVDPPDGVKAIEWKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSLVAMLKS 653

Query: 553  IRILLSIATFYDYEIWEMDVKTAFLNDNLEESIYMTQLEGFIEQDREQRVCKLKRFIYGL 612
            I+I+L+I  ++DYEIW+MDVKTAF+N N++E +YMTQL+GF++    +++CKL++ IYGL
Sbjct: 654  IQIVLAITAYFDYEIWQMDVKTAFVNGNIDEDVYMTQLKGFVDPQSAKKICKLQKSIYGL 713

Query: 613  KQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLY-DYLYLMHHKSEALEK 672
            KQASRSWNI+FD  +K++               ++ T   LVLY D + L+ +    LE 
Sbjct: 714  KQASRSWNIRFDEVVKAWA--------------LSKTKKSLVLYVDDILLIGNDIPMLE- 773

Query: 673  FREYKTEVENLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPVETATYILNMVP 732
                KT ++N           D G     L  + Y      RS+    +  +TYI  ++ 
Sbjct: 774  --SVKTSLKNSFS------MKDLGEAAYILGIRIYR----DRSKRLIGLSQSTYIDKVLK 833

Query: 733  SKSVSETPYELWKGRKDQPDGVKPIGCKWIYKRKRDQTGKDSKKGLLSFRHGVHLSKEQS 792
              ++ ++     KG      G+       + K +  QT  +  K                
Sbjct: 834  RFNMQDSK----KGFLPMSHGIN------LGKNQCPQTTDERNK---------------- 893

Query: 793  PKTPQEVEDMRHIPYASAVGSLMYAMLCTQPDICYAIGIVSRYQSNSGHAHWTAVKNILK 852
                     M  IPYASA+GS+MYAMLCT PD+ YA+   SRYQS+ G +HW AVKNILK
Sbjct: 894  ---------MSVIPYASAIGSIMYAMLCTHPDVSYALSATSRYQSDPGESHWIAVKNILK 953

Query: 853  YLRRTRDYMLMYGA-KDLILTGYTDSDFQTDVDSRKSTSESVFTLNGGAIIWRSIKQGCI 912
            YLRRT+D  L+YG  ++L++ GYTD+ FQTD D  +S S  VF LNGGA+ W+S KQ  +
Sbjct: 954  YLRRTKDMFLVYGGQEELVVKGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTV 1007

Query: 913  ANSTMEAEYVAVYEAAKESVWHRKFLTHLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKR 936
             +S  EAEY+A  EAAKE+VW +KF++ L V+ +   P+ LYCDNSGA+A +KEPRSH++
Sbjct: 1014 VDSITEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLYCDNSGAIAQAKEPRSHQK 1007

[Close]

BLAST of CmoCh04G021440 vs. NCBI nr
Match: gi|62732694|gb|AAX94813.1| (retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa Japonica Group])

HSP 1 Score: 394.0 bits (1011), Expect = 7.1e-106
Identity = 247/616 (40.10%), Postives = 337/616 (54.71%), Query Frame = 1


Query: 317 RAKETLELVHTDLCGPMNIKAQGGCEYFISFIDDYSRYDYLYLMHHKSEALEKFREYKTE 376
           +A E L LVHTD+CGPM+  A+GG  YFI+F +D+SRY Y+YLM HKS++ EKF+E++ E
Sbjct: 376 KASELLGLVHTDVCGPMSSTARGGFGYFITFTNDFSRYGYVYLMRHKSDSFEKFKEFQNE 435

Query: 377 VENLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPVE----------------- 436
           V+N LGKTIK LRSDRGGEY+ L F +++ E GI  QL+ P                   
Sbjct: 436 VQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDM 495

Query: 437 --------------------TATYILNMVPSKSVSETPYELWKGRKDQPDGVKPIGCKWI 496
                               TA + LN VPSKSV +TPYE+W G++     +K  GC+  
Sbjct: 496 VRSMMSQTDLPLSFWGYTLETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEET 555

Query: 497 YKRKRDQTGKVQIFKARLVAKCYTQRERVDYEETFSPIAMLKSIRILLSIA--------- 556
            +     T   Q  +         Q E+V  E      A  +S RI  + A         
Sbjct: 556 PENASTSTQPQQAEQ-----DVVQQVEQVVVEPVVEAPASRRSERIRRTPASCGSTGFTK 615

Query: 557 ----TFYDYEIWEMDVKTAFLNDNLEESIYMTQLEGFIEQDREQRVCKLKRFIYGLKQAS 616
               T Y  +IW+MDVKTAFLN NL+E +YMTQ +GF++    +++CKL++ IYGLKQAS
Sbjct: 616 VRKDTTYTCKIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQAS 675

Query: 617 RSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLY-DYLYLMHHKSEALEKFREY 676
           RSWNI FD  +K+ GF +N  EPCVYK+I  S + FL+LY D + L+ +    LE     
Sbjct: 676 RSWNIHFDEIVKALGFVKNEQEPCVYKKISGSALVFLILYVDDILLIENDIPMLE---SV 735

Query: 677 KTEVENLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPVETATYILNMVPSKSV 736
           KT ++N           D G     L  + Y      RS+    +  +TYI  ++   ++
Sbjct: 736 KTSLKNSFS------MKDLGEAAYILGIRIYK----DRSKRLIGLSQSTYIDKVLKRFNM 795

Query: 737 SETPYELWKGRKDQPDGVKPIGCKWIYKRKRDQTGKDSKKGLLSFRHGVHLSKEQSPKTP 796
            ++     KG      G+       + K +  QT  +  K                    
Sbjct: 796 QDSK----KGFLPMSHGIN------LGKNQCPQTTNERNK-------------------- 855

Query: 797 QEVEDMRHIPYASAVGSLMYAMLCTQPDICYAIGIVSRYQSNSGHAHWTAVKNILKYLRR 856
                M  IPYASA+GS+MYAMLCT+PD+ YA+   S+YQS+ G +HW A+KNILKYLRR
Sbjct: 856 -----MSVIPYASAIGSIMYAMLCTRPDVSYALSATSQYQSDPGESHWIALKNILKYLRR 915

Query: 857 TRDYMLMYGA-KDLILTGYTDSDFQTDVDSRKSTSESVFTLNGGAIIWRSIKQGCIANST 881
           T+D  L+YG  ++L++ GYTD+ FQ D D  +S S  VF LNGGA+ W+S KQ  +A+ST
Sbjct: 916 TKDMFLVYGGQEELVVNGYTDASFQIDKDDFRSQSGFVFYLNGGAVSWKSSKQDTVADST 938

[Close]

BLAST of CmoCh04G021440 vs. NCBI nr
Match: gi|56382058|gb|AAV85747.1| (Integrase core domain, putative [Oryza sativa Japonica Group])

HSP 1 Score: 379.0 bits (972), Expect = 2.4e-101
Identity = 218/477 (45.70%), Postives = 295/477 (61.84%), Query Frame = 1


Query: 461  KRKRDQTGKVQIFKARLVAKCYTQRERVDYEETFSPIAMLKSIRILLSIATFYDYEIWEM 520
            K+K D  G V I+KARLVAK + Q + VDY+ETFSP+AMLK I I+L+IA ++DYEIW+M
Sbjct: 717  KKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKFIWIVLAIAAYFDYEIWQM 776

Query: 521  DVKTAFLNDNLEESIYMTQLEGFIEQDREQRVCKLKRFIYGLKQASRSWNIKFDTAIKSY 580
             VKTAFLN NL+E +YMTQ +GF +    +++CKL + IYGLKQASRSWNI+FD  +K+ 
Sbjct: 777  YVKTAFLNGNLDEDVYMTQPKGFDDPQSAKKICKLHQSIYGLKQASRSWNIRFDEVVKAL 836

Query: 581  GFKQNVDEPCVYKRIVNSTVAFLVLY-DYLYLMHHKSEALEKFREYKTEVENLLGKTIKT 640
            GF +N +EPCVYK+I  S + FL+LY D + L+ +    LE     KT ++N        
Sbjct: 837  GFVRNEEEPCVYKKISGSALVFLILYVDDILLIGNDISMLE---SVKTSLKNSFS----- 896

Query: 641  LRSDRGGEYMDLRFQDYMIEHGIRSQLSAPVETATYILNMVPSKSVSETPYELWKGRKDQ 700
               D G     L  + Y      RS+    +  +TYI  ++   ++ ++     KG    
Sbjct: 897  -MKDLGEAAYILGIRIYR----DRSKRLIGLSQSTYIDKVLKRFNMQDSK----KGFLPM 956

Query: 701  PDGVKPIGCKWIYKRKRDQTGKDSKKGLLSFRHGVHLSKEQSPKTPQEVEDMRHIPYASA 760
              G+       + K +  QT  +  K                         M  IPYASA
Sbjct: 957  SHGIN------LGKNQCPQTTDERNK-------------------------MSVIPYASA 1016

Query: 761  VGSLMYAMLCTQPDICYAIGIVSRYQSNSGHAHWTAVKNILKYLRRTRDYMLMYGA-KDL 820
            +GS+MYAMLCT+PD+ YA+   SRYQS+ G +HW AVKNILKYLRRT+D  L YG  ++L
Sbjct: 1017 IGSIMYAMLCTRPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMFLAYGGQEEL 1076

Query: 821  ILTGYTDSDFQTDVDSRKSTSESVFTLNGGAIIWRSIKQGCIANSTMEAEYVAVYEAAKE 880
            ++ GYTD+ FQ D D  +S S  VF LNGGA+ W+S KQ  + +ST EAEY+    AA E
Sbjct: 1077 VVNGYTDASFQIDKDDFRSQSGFVFCLNGGAVSWKSSKQDIVVDSTTEAEYI----AASE 1136

Query: 881  SVWHRKFLTHLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIV 936
            +VW +KF++ L V+ +    + LYCDNSGA+A +KEPRSH++ KHI R+YHLIREIV
Sbjct: 1137 AVWIKKFVSQLGVMTSASSSMDLYCDNSGAIAQAKEPRSHQKSKHILRQYHLIREIV 1141

[Close]

BLAST of CmoCh04G021440 vs. NCBI nr
Match: gi|1019597807|gb|AMY96445.1| (gag/pol protein [Momordica dioica])

HSP 1 Score: 349.0 bits (894), Expect = 2.6e-92
Identity = 171/217 (78.80%), Postives = 189/217 (87.10%), Query Frame = 1


Query: 721  KDSKKGLLSFRHGVHLSKEQSPKTPQEVEDMRHIPYASAVGSLMYAMLCTQPDICYAIGI 780
            +DSKKGLL FRHG+HLSKEQ PKTPQEVEDMR+IPY+SA+GSLMYAMLCT+PD+CYA+ I
Sbjct: 1085 QDSKKGLLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAIGSLMYAMLCTRPDVCYALSI 1144

Query: 781  VSRYQSNSGHAHWTAVKNILKYLRRTRDYMLMYGA-KDLILTGYTDSDFQTDVDSRKSTS 840
            VSRYQSN G  HWTAVKNILKYLRRTR+  L+YG  KDL + GYTDS FQTD D  KS S
Sbjct: 1145 VSRYQSNPGRDHWTAVKNILKYLRRTRNMFLVYGGDKDLAVKGYTDSSFQTDKDDSKSQS 1204

Query: 841  ESVFTLNGGAIIWRSIKQGCIANSTMEAEYVAVYEAAKESVWHRKFLTHLEVVPNMHLPV 900
              VFTLNGGA+ WRS KQ C+A+ST EAEYVA  EAAKE+VW RKFLT L VVPNMHLP+
Sbjct: 1205 -GVFTLNGGAVSWRSSKQTCVADSTCEAEYVAACEAAKEAVWIRKFLTDLGVVPNMHLPI 1264

Query: 901  TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQ 937
            TLYCDNSGAVAN+KEPRSHKRGKHIERKYHLIREIV+
Sbjct: 1265 TLYCDNSGAVANAKEPRSHKRGKHIERKYHLIREIVE 1300

The following BLAST results are available for this feature:

BLAST of CmoCh04G021440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	8.0e-49	49.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	1.7e-30	38.71	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
YCH4_YEAST	1.2e-09	29.41	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]
YD22B_YEAST	3.7e-06	28.85	Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
YD23B_YEAST	3.7e-06	28.85	Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of CmoCh04G021440 vs. TrEMBL


Match Name	E-value	Identity	Description
E2GK51_BRYDI	1.7e-151	59.72	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
Q2QUJ4_ORYSJ	3.9e-111	37.55	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]
Q53K55_ORYSJ	4.9e-106	40.10	Retrotransposon protein, putative, Ty1-copia sub-class OS=Oryza sativa subsp. ja...	[more]
Q5R1J2_ORYSJ	1.6e-101	45.70	Integrase core domain, putative OS=Oryza sativa subsp. japonica GN=LOC_Os11g1858...	[more]
A0A165U314_9ROSI	1.8e-92	78.80	Gag/pol protein OS=Momordica dioica PE=4 SV=1	[more]

BLAST of CmoCh04G021440 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	8.5e-33	38.12	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.1e-07	42.11	ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

BLAST of CmoCh04G021440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|299474487\|gb\|ADJ18449.1\|	2.5e-151	59.72	gag/pol protein [Bryonia dioica]	[more]
gi\|108862437\|gb\|ABA97342.2\|	5.6e-111	37.55	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]
gi\|62732694\|gb\|AAX94813.1\|	7.1e-106	40.10	retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa Japonica Gr...	[more]
gi\|56382058\|gb\|AAV85747.1\|	2.4e-101	45.70	Integrase core domain, putative [Oryza sativa Japonica Group]	[more]
gi\|1019597807\|gb\|AMY96445.1\|	2.6e-92	78.80	gag/pol protein [Momordica dioica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf
IPR013103	RVT_2

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G021440.1	CmoCh04G021440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 321..417 score: 1.3
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 302..417 score: 11
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 316..417 score: 1.1
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 317..439 score: 4.7E-20coord: 607..697 score: 6.07E-12coord: 224..315 score: 5.12
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 446..624 score: 2.9
None	No IPR available	unknown	Coil	Coil	coord: 363..383 score: -coord: 232..252 score: -coord: 615..635 scor
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 232..247 score: 1.3E-195coord: 740..899 score: 1.3E-195coord: 295..630 score: 1.3E-195coord: 12..208 score: 1.3E
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 232..247 score: 1.3E-195coord: 740..899 score: 1.3E-195coord: 295..630 score: 1.3E-195coord: 12..208 score: 1.3E
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..191 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G021440	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G021440	Bottle gourd (USVL1VR-Ls)	cmolsiB612
CmoCh04G021440	Bottle gourd (USVL1VR-Ls)	cmolsiB613
CmoCh04G021440	Bottle gourd (USVL1VR-Ls)	cmolsiB677
CmoCh04G021440	Cucumber (Gy14) v2	cgybcmoB637
CmoCh04G021440	Melon (DHL92) v3.6.1	cmomedB719
CmoCh04G021440	Melon (DHL92) v3.6.1	cmomedB744
CmoCh04G021440	Silver-seed gourd	carcmoB0896
CmoCh04G021440	Watermelon (97103) v2	cmowmbB680
CmoCh04G021440	Watermelon (97103) v2	cmowmbB740
CmoCh04G021440	Wax gourd	cmowgoB0827
CmoCh04G021440	Wax gourd	cmowgoB0909
CmoCh04G021440	Cucurbita moschata (Rifu)	cmocmoB270
CmoCh04G021440	Cucurbita maxima (Rimu)	cmacmoB729