CmoCh04G021220 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G021220
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 13901195 .. 13902257 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCCTCCACATTACACCACCTTCAATTCTCATTCCTTCAGCATTCAATAAATAACTCCTACCATTCCCTTGCCTCTTAACTCCCATCTCAAACTCTATGGCTTCCAAATCATGCCATCTTTTGGTCATCTGCCTTGCCTTTTTATTCCCTCTAGCCATCAGCCAAGCCCCGGCGCAGCCACCGAGCTTGCCGACCGCAACGCCACCGCCATCCACCCCGCCACCTACCATAACAATTACACCACCCCCTAATGTTGCTGCACCATCAATAGCCCCAACTATCCCACCACCCCAACCGCCTCAAACCCCACCTGTCTCCACCCCGTCTCTGCCTCCGGTATTTCCACCTCCACCTGTTACTCCTCCACCATTGCCACCTCCTCCTGCTACTCCTCCGCCATTGCCACCTCCTTTACCGGCGCCACAGATCTCTCCAACTCCTTTGCAGGTAGCGCCGTTGCCGACTCCGCCAACACCGGTGCCTTCACCGCCAATGCTAGCTCCGGTTGCAGTGCCAGAGTTAGCCCCTGCACCAGCTCCGGGAAAGCATAAGCATAGAAGGCGTCACAAACATAAAAAGCATCAAGCCCCAGCCCCAGCCCCAGCCGTCCCAAGCCCACCAGCACCACCTACAGTGGTGGATTCACAGGATGATAGTACAGCACCAGCGCCATCACCAAATCTGGTAAGCAAATCACTTTCATCATGTGTTGTTTTTATTTAGATATCTATATAGCATTAATGAAAATGAAGAAAAGGTAAAATTGAGATTTGTGTTGTAATACCATATTTGTTTATCCACAGAACGGAGGAGACCCAATGAAAGAAAAGGTGGGAAGATGGGCCAGAGTTGTATTGGGATTCATAATTGTGGTTGCTTCCACAGCCTTCAATTTCTAGTTTTGAAGAGAATTATAATCCACGGTGAATCCAATTAGGGTTCATAATGTTATAGAGTTTGCTCAGAGGCCGAGAGAGATTTTTCATATCTATCATTTTTTTTTTTATATGCTTTGTGGATTGAGATAATAATGAATTCTTCCTTTTATTTTATTTTATTTCA

mRNA sequence

CTCCCTCCACATTACACCACCTTCAATTCTCATTCCTTCAGCATTCAATAAATAACTCCTACCATTCCCTTGCCTCTTAACTCCCATCTCAAACTCTATGGCTTCCAAATCATGCCATCTTTTGGTCATCTGCCTTGCCTTTTTATTCCCTCTAGCCATCAGCCAAGCCCCGGCGCAGCCACCGAGCTTGCCGACCGCAACGCCACCGCCATCCACCCCGCCACCTACCATAACAATTACACCACCCCCTAATGTTGCTGCACCATCAATAGCCCCAACTATCCCACCACCCCAACCGCCTCAAACCCCACCTGTCTCCACCCCGTCTCTGCCTCCGGTATTTCCACCTCCACCTGTTACTCCTCCACCATTGCCACCTCCTCCTGCTACTCCTCCGCCATTGCCACCTCCTTTACCGGCGCCACAGATCTCTCCAACTCCTTTGCAGGTAGCGCCGTTGCCGACTCCGCCAACACCGGTGCCTTCACCGCCAATGCTAGCTCCGGTTGCAGTGCCAGAGTTAGCCCCTGCACCAGCTCCGGGAAAGCATAAGCATAGAAGGCGTCACAAACATAAAAAGCATCAAGCCCCAGCCCCAGCCCCAGCCGTCCCAAGCCCACCAGCACCACCTACAGTGGTGGATTCACAGGATGATAGTACAGCACCAGCGCCATCACCAAATCTGAACGGAGGAGACCCAATGAAAGAAAAGGTGGGAAGATGGGCCAGAGTTGTATTGGGATTCATAATTGTGGTTGCTTCCACAGCCTTCAATTTCTAGTTTTGAAGAGAATTATAATCCACGGTGAATCCAATTAGGGTTCATAATGTTATAGAGTTTGCTCAGAGGCCGAGAGAGATTTTTCATATCTATCATTTTTTTTTTTATATGCTTTGTGGATTGAGATAATAATGAATTCTTCCTTTTATTTTATTTTATTTCA

Coding sequence (CDS)

ATGGCTTCCAAATCATGCCATCTTTTGGTCATCTGCCTTGCCTTTTTATTCCCTCTAGCCATCAGCCAAGCCCCGGCGCAGCCACCGAGCTTGCCGACCGCAACGCCACCGCCATCCACCCCGCCACCTACCATAACAATTACACCACCCCCTAATGTTGCTGCACCATCAATAGCCCCAACTATCCCACCACCCCAACCGCCTCAAACCCCACCTGTCTCCACCCCGTCTCTGCCTCCGGTATTTCCACCTCCACCTGTTACTCCTCCACCATTGCCACCTCCTCCTGCTACTCCTCCGCCATTGCCACCTCCTTTACCGGCGCCACAGATCTCTCCAACTCCTTTGCAGGTAGCGCCGTTGCCGACTCCGCCAACACCGGTGCCTTCACCGCCAATGCTAGCTCCGGTTGCAGTGCCAGAGTTAGCCCCTGCACCAGCTCCGGGAAAGCATAAGCATAGAAGGCGTCACAAACATAAAAAGCATCAAGCCCCAGCCCCAGCCCCAGCCGTCCCAAGCCCACCAGCACCACCTACAGTGGTGGATTCACAGGATGATAGTACAGCACCAGCGCCATCACCAAATCTGAACGGAGGAGACCCAATGAAAGAAAAGGTGGGAAGATGGGCCAGAGTTGTATTGGGATTCATAATTGTGGTTGCTTCCACAGCCTTCAATTTCTAG
Homology
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BLAST of CmoCh04G021220 vs. Swiss-Prot
Match: AGP19_ARATH (Lysine-rich arabinogalactan protein 19 OS=Arabidopsis thaliana GN=AGP19 PE=2 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 4.5e-22
Identity = 103/203 (50.74%), Postives = 123/203 (60.59%), Query Frame = 1 

Query: 29  PSLPTATPP--PSTPPPTITITPPPNV-AAPSIAPTIPPPQPPQTPPVSTPSLPPVFPPP 88
           P +  A PP  P TPPP +T T PP    AP I+P  PPPQPPQ+PP S P++ P    P
Sbjct: 59  PPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAPTVSP----P 118

Query: 89  PVTPPPLPPPPATPPPLPPPLPAPQISPTPLQVAPLPTPPTPVPSPPMLAPVAVPELAPA 148
           PV+PPP P  P   P  PPP PA   SP P   AP   PP PV  PP+ AP  +  L PA
Sbjct: 119 PVSPPPAPTSPPPTPASPPPAPA---SPPP---APASPPPAPVSPPPVQAPSPI-SLPPA 178

Query: 149 PAPGKHKHRRRHKHKKHQ-APAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKE 208
           PAP   KH+R+HKHK+H  APAPAP  PSPP+PP + D QD  TAPAPSPN NGG+ + +
Sbjct: 179 PAPAPTKHKRKHKHKRHHHAPAPAPIPPSPPSPPVLTDPQD--TAPAPSPNTNGGNALNQ 238

Query: 209 KVGR---WARVVLGFIIVVASTA 225
             GR   W    L  + ++A TA
Sbjct: 239 LKGRAVMWLNTGLVILFLLAMTA 248

[Close]
BLAST of CmoCh04G021220 vs. TrEMBL
Match: A0A0A0LHJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G115750 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-66
Identity = 168/241 (69.71%), Postives = 183/241 (75.93%), Query Frame = 1 

Query: 1   MASKSCHLLVICLAFLFPLAISQAPAQPPSLPTATPPPSTPPPTITI-----TPPPNVAA 60
           MASKS    VICLAFLF  + +QAPAQPPSLPT +PPP+TPPPT+       TPPP V A
Sbjct: 15  MASKSWSFFVICLAFLFSSSFAQAPAQPPSLPTVSPPPTTPPPTVATSPPLSTPPPTVVA 74

Query: 61  PSIAPTIPPPQPPQTPPVSTPSLPPVFPPPPVTPPPLPPPPATPPPLPPPLPAPQISPTP 120
           PS +PTIPPPQ   + PVSTPSLPP           LPPPPATPPPLPPPLP PQ+SPTP
Sbjct: 75  PSTSPTIPPPQ---SSPVSTPSLPPA----------LPPPPATPPPLPPPLPPPQVSPTP 134

Query: 121 LQV----------APLPTPPTPVPSPPMLAPVAVPELAPAPAPGKHKHRRRHKHKKHQAP 180
           L             PLPTPPTP PSPP  APVA PE +PAPAPGKHKHRRRHKHKKHQAP
Sbjct: 135 LPTPPVLAPTLAPLPLPTPPTPTPSPPTPAPVAAPEPSPAPAPGKHKHRRRHKHKKHQAP 194

Query: 181 APAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARVVLGFIIVVASTAF 227
           APAP VPSPPAPPTVVDSQ DSTAPAPSP+LNGGDP+K KVGRW++V LGFI +VA+T F
Sbjct: 195 APAPTVPSPPAPPTVVDSQ-DSTAPAPSPDLNGGDPVKRKVGRWSKVGLGFIFLVATTGF 241

[Close]
BLAST of CmoCh04G021220 vs. TrEMBL
Match: A0A067FVG5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023867mg PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.9e-29
Identity = 128/269 (47.58%), Postives = 157/269 (58.36%), Query Frame = 1 

Query: 8   LLVICLAFLFPLAISQAPAQPPS-LPTATPPPST---PPPTIT----------------- 67
           L+++C  F   +  +Q PA  PS LPT TPPP+T   PPPT T                 
Sbjct: 8   LILVCSIFPIAITNAQTPAASPSNLPTTTPPPTTAAAPPPTTTPPPTTTAPPPTTTPPPS 67

Query: 68  -------------ITPPPNVA-------APSIAPTIPPPQPPQTPPVSTPSLPPVFPPPP 127
                         TPPP          AP+ +P++PPPQPPQ+PP+STPS PP  PPPP
Sbjct: 68  TTPTAPTQPPVSAATPPPATTPASSPKVAPATSPSVPPPQPPQSPPISTPSQPPALPPPP 127

Query: 128 VTPPP-LPPPPATPPPL-PPPLPAPQISPTPLQVAPLPTPPTPVPSP------PMLAPVA 187
            TPPP LPPP  +P P   PP PAP  +P     AP+  PPTP P+P      P  APV+
Sbjct: 128 ATPPPALPPPQVSPTPAQAPPAPAPAKAPPTPAPAPVKAPPTPAPAPVKAPPTPAPAPVS 187

Query: 188 VPELAPAPAPGKHKHRRRHKHKK-HQAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLN 224
           +P  APAPAP KHK +R+HKHK+ H APAPAP VPSPPAPPTV DS+D + APAPS NLN
Sbjct: 188 LPP-APAPAPPKHKKKRKHKHKRHHHAPAPAPTVPSPPAPPTVPDSEDTTPAPAPSLNLN 247

[Close]
BLAST of CmoCh04G021220 vs. TrEMBL
Match: A0A061ECT3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011899 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-26
Identity = 120/270 (44.44%), Postives = 147/270 (54.44%), Query Frame = 1 

Query: 1   MASKSCHLLVICLAFLFPLAISQAPAQPPSL--------------PTATPPPST--PPPT 60
           MA  S  L++ CL+F   +  +Q PA  PS               PTATPPPST  PPPT
Sbjct: 1   MAPMSWALILTCLSFQLAITNAQGPAASPSTTPTTITPPSTSPPPPTATPPPSTATPPPT 60

Query: 61  IT---------------ITPPP-NVAAPSIAPT---------IPPPQPPQTPPVSTPSLP 120
            T                TPPP    AP +AP          IPPPQPPQTPP + P  P
Sbjct: 61  TTPPPSTTPTAPAQPPATTPPPVTTPAPKVAPATSPTVPPPQIPPPQPPQTPPTTAPVQP 120

Query: 121 PVFPPPPVTPPPLPPPPATPPPLPPPLPAPQISPTPLQVAPLPTPPTPVPSPPMLAPVAV 180
           P  PPPP +PP + P PA  PP          +P P + AP+P P      PP LAP+ +
Sbjct: 121 PAVPPPPASPPRVSPAPAQAPP----------APAPAKEAPVPAP---AKLPPALAPIIL 180

Query: 181 PELAPAPAPGKHKHRRRHKHKKHQAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGG 228
           P  APAPAP KH+ R RH+H++H APAPAP VPSPPAPPTV  + D + AP+PS NLNGG
Sbjct: 181 PP-APAPAPSKHRRRHRHRHRRHHAPAPAPTVPSPPAPPTVPTTDDTTPAPSPSLNLNGG 240

[Close]
BLAST of CmoCh04G021220 vs. TrEMBL
Match: K4BXI2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.3e-24
Identity = 119/230 (51.74%), Postives = 137/230 (59.57%), Query Frame = 1 

Query: 19  LAISQAPAQPPSLPTATPPPST------PPPTIT---------------ITPPPNVAAPS 78
           +A +QAPA  PS P  TPPP+T      PPP+ T               I PPP VA P 
Sbjct: 1   MANAQAPAASPSTPITTPPPTTTPVAATPPPSTTPVAPSQPPVTSAPPPIVPPPKVA-PV 60

Query: 79  IAPTIPPPQPPQTPPVSTPSLPPVFPPP-PVTPPPLPPPPATPPPLPPPLPAPQISPTPL 138
            AP  PPPQPP  PPVS+PS PPV PPP PV  PP  PPP   P   PP PAP   P   
Sbjct: 61  SAPATPPPQPPPIPPVSSPSQPPVLPPPAPVASPPAVPPPQIAPAQTPPSPAPVTPPVSP 120

Query: 139 QVAPLPTPPTPV-PSPPMLAPVAVPELAPAPAP--GKHKHRRRHKHKKHQAPAPAPAVPS 198
             AP  + PTPV P P +++PVA PELAPAPAP  GKHK R++HKHK H APAPAP VPS
Sbjct: 121 PKAPPVSAPTPVAPPPAVISPVAAPELAPAPAPAHGKHK-RKKHKHKHHHAPAPAPTVPS 180

Query: 199 PPAPPTVVDSQDDSTAPAPSPNLNGGDPMKE--KVGRWARVVLGFIIVVA 222
           PPAPPTV DS D + AP+P+ NLNG   + +    G W    L   I++A
Sbjct: 181 PPAPPTVQDSVDVTPAPSPTLNLNGATFLLQGSASGMWMNAGLAMTILLA 228

[Close]
BLAST of CmoCh04G021220 vs. TrEMBL
Match: A9PG83_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14250g PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 121/257 (47.08%), Postives = 148/257 (57.59%), Query Frame = 1 

Query: 1   MASKSCHLLVICLAFLFPLAISQAPAQPPSLPTAT-PPPSTPPPTIT------ITPP--- 60
           MAS    L++ CL+F   +  +Q PA  PS PT T PPP+T P T T      +TPP   
Sbjct: 1   MASVLWALILACLSFPLAITDAQTPAVSPSTPTTTTPPPTTTPTTPTQSPASAVTPPTAT 60

Query: 61  -------PNVAAPSIAPTIPPPQPPQTPPVSTPSLPPVFPPPPVTPPPLPPPPATPPPLP 120
                  P VA P+  P +PPPQPPQ+ P +TP  PP  PPP V+P P P   ATPPP P
Sbjct: 61  TPISSPSPKVA-PATTPVVPPPQPPQSSPAATPIPPPATPPPQVSPAPAP---ATPPPAP 120

Query: 121 PP---LPAPQISPTPLQVAPLPTPPTPVPSPPMLAPVAVPEL--APAPAPGKHKHRRRHK 180
            P   +PAP         AP   PP PVP+P +  P   P L  +PAPAPGKHK +R+HK
Sbjct: 121 APAKEVPAP---------APATPPPAPVPAPAIPPPAPSPSLVPSPAPAPGKHKMKRKHK 180

Query: 181 HK-KHQAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGR-------WA 228
           HK  H APAPAP  PSPPAPPTV  + +D TAPAPSP  NGG+ +  + GR       WA
Sbjct: 181 HKHHHHAPAPAPNPPSPPAPPTVTTASED-TAPAPSP--NGGNTLYHQEGRARMWARMWA 240

[Close]
BLAST of CmoCh04G021220 vs. TAIR10
Match: AT1G68725.1 (AT1G68725.1 arabinogalactan protein 19)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-23
Identity = 103/203 (50.74%), Postives = 123/203 (60.59%), Query Frame = 1 

Query: 29  PSLPTATPP--PSTPPPTITITPPPNV-AAPSIAPTIPPPQPPQTPPVSTPSLPPVFPPP 88
           P +  A PP  P TPPP +T T PP    AP I+P  PPPQPPQ+PP S P++ P    P
Sbjct: 59  PPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAPTVSP----P 118

Query: 89  PVTPPPLPPPPATPPPLPPPLPAPQISPTPLQVAPLPTPPTPVPSPPMLAPVAVPELAPA 148
           PV+PPP P  P   P  PPP PA   SP P   AP   PP PV  PP+ AP  +  L PA
Sbjct: 119 PVSPPPAPTSPPPTPASPPPAPA---SPPP---APASPPPAPVSPPPVQAPSPI-SLPPA 178

Query: 149 PAPGKHKHRRRHKHKKHQ-APAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKE 208
           PAP   KH+R+HKHK+H  APAPAP  PSPP+PP + D QD  TAPAPSPN NGG+ + +
Sbjct: 179 PAPAPTKHKRKHKHKRHHHAPAPAPIPPSPPSPPVLTDPQD--TAPAPSPNTNGGNALNQ 238

Query: 209 KVGR---WARVVLGFIIVVASTA 225
             GR   W    L  + ++A TA
Sbjct: 239 LKGRAVMWLNTGLVILFLLAMTA 248

[Close]
BLAST of CmoCh04G021220 vs. NCBI nr
Match: gi|778668213|ref|XP_011649058.1| (PREDICTED: lysine-rich arabinogalactan protein 19-like [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 3.0e-66
Identity = 168/241 (69.71%), Postives = 183/241 (75.93%), Query Frame = 1 

Query: 1   MASKSCHLLVICLAFLFPLAISQAPAQPPSLPTATPPPSTPPPTITI-----TPPPNVAA 60
           MASKS    VICLAFLF  + +QAPAQPPSLPT +PPP+TPPPT+       TPPP V A
Sbjct: 1   MASKSWSFFVICLAFLFSSSFAQAPAQPPSLPTVSPPPTTPPPTVATSPPLSTPPPTVVA 60

Query: 61  PSIAPTIPPPQPPQTPPVSTPSLPPVFPPPPVTPPPLPPPPATPPPLPPPLPAPQISPTP 120
           PS +PTIPPPQ   + PVSTPSLPP           LPPPPATPPPLPPPLP PQ+SPTP
Sbjct: 61  PSTSPTIPPPQ---SSPVSTPSLPPA----------LPPPPATPPPLPPPLPPPQVSPTP 120

Query: 121 LQV----------APLPTPPTPVPSPPMLAPVAVPELAPAPAPGKHKHRRRHKHKKHQAP 180
           L             PLPTPPTP PSPP  APVA PE +PAPAPGKHKHRRRHKHKKHQAP
Sbjct: 121 LPTPPVLAPTLAPLPLPTPPTPTPSPPTPAPVAAPEPSPAPAPGKHKHRRRHKHKKHQAP 180

Query: 181 APAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARVVLGFIIVVASTAF 227
           APAP VPSPPAPPTVVDSQ DSTAPAPSP+LNGGDP+K KVGRW++V LGFI +VA+T F
Sbjct: 181 APAPTVPSPPAPPTVVDSQ-DSTAPAPSPDLNGGDPVKRKVGRWSKVGLGFIFLVATTGF 227

[Close]
BLAST of CmoCh04G021220 vs. NCBI nr
Match: gi|700206281|gb|KGN61400.1| (hypothetical protein Csa_2G115750 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 3.0e-66
Identity = 168/241 (69.71%), Postives = 183/241 (75.93%), Query Frame = 1 

Query: 1   MASKSCHLLVICLAFLFPLAISQAPAQPPSLPTATPPPSTPPPTITI-----TPPPNVAA 60
           MASKS    VICLAFLF  + +QAPAQPPSLPT +PPP+TPPPT+       TPPP V A
Sbjct: 15  MASKSWSFFVICLAFLFSSSFAQAPAQPPSLPTVSPPPTTPPPTVATSPPLSTPPPTVVA 74

Query: 61  PSIAPTIPPPQPPQTPPVSTPSLPPVFPPPPVTPPPLPPPPATPPPLPPPLPAPQISPTP 120
           PS +PTIPPPQ   + PVSTPSLPP           LPPPPATPPPLPPPLP PQ+SPTP
Sbjct: 75  PSTSPTIPPPQ---SSPVSTPSLPPA----------LPPPPATPPPLPPPLPPPQVSPTP 134

Query: 121 LQV----------APLPTPPTPVPSPPMLAPVAVPELAPAPAPGKHKHRRRHKHKKHQAP 180
           L             PLPTPPTP PSPP  APVA PE +PAPAPGKHKHRRRHKHKKHQAP
Sbjct: 135 LPTPPVLAPTLAPLPLPTPPTPTPSPPTPAPVAAPEPSPAPAPGKHKHRRRHKHKKHQAP 194

Query: 181 APAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARVVLGFIIVVASTAF 227
           APAP VPSPPAPPTVVDSQ DSTAPAPSP+LNGGDP+K KVGRW++V LGFI +VA+T F
Sbjct: 195 APAPTVPSPPAPPTVVDSQ-DSTAPAPSPDLNGGDPVKRKVGRWSKVGLGFIFLVATTGF 241

[Close]
BLAST of CmoCh04G021220 vs. NCBI nr
Match: gi|659114696|ref|XP_008457186.1| (PREDICTED: lysine-rich arabinogalactan protein 19 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 5.2e-63
Identity = 166/241 (68.88%), Postives = 178/241 (73.86%), Query Frame = 1 

Query: 1   MASKSCHLLVICLAFLFPLAISQAPAQPPSLPTATPPPSTPPPTITI-----TPPPNVAA 60
           MASK     VICLAFLF  AI+QAPAQPPSLPT +PPPSTPPPT+       TPPP V A
Sbjct: 15  MASKLWSFSVICLAFLFSSAIAQAPAQPPSLPTVSPPPSTPPPTVPTPPPLSTPPPTVVA 74

Query: 61  PSIAPTIPPPQPPQTPPVSTPSLPPVFPPPPVTPPPLPPPPATPPPLPPPLPAPQISPTP 120
           PS +P IPPPQ   + PVSTPSLPP FP          PPPATPPPLPPPLP PQ+SP P
Sbjct: 75  PSTSPAIPPPQ---SSPVSTPSLPPAFP----------PPPATPPPLPPPLPPPQVSPIP 134

Query: 121 LQV----------APLPTPPTPVPSPPMLAPVAVPELAPAPAPGKHKHRRRHKHKKHQAP 180
           L             PLPT PTP PSPP  APVA PEL+PAPAPGKHKHRRRHKHKKHQAP
Sbjct: 135 LPTPPVLAPTLAPLPLPTSPTPTPSPPTPAPVASPELSPAPAPGKHKHRRRHKHKKHQAP 194

Query: 181 APAPAVPSPPAPPTVVDSQDDSTAPAPSPNLNGGDPMKEKVGRWARVVLGFIIVVASTAF 227
           APAP VPSPPAPPTVVDSQ DSTAPAPSP+L+ GDPMK KVG W +V LGFI +VA+T F
Sbjct: 195 APAPTVPSPPAPPTVVDSQ-DSTAPAPSPDLSRGDPMKGKVGTWTKVGLGFIFLVATTGF 241

[Close]
BLAST of CmoCh04G021220 vs. NCBI nr
Match: gi|641851274|gb|KDO70145.1| (hypothetical protein CISIN_1g023867mg [Citrus sinensis])

HSP 1 Score: 136.0 bits (341), Expect = 8.4e-29
Identity = 128/269 (47.58%), Postives = 157/269 (58.36%), Query Frame = 1 

Query: 8   LLVICLAFLFPLAISQAPAQPPS-LPTATPPPST---PPPTIT----------------- 67
           L+++C  F   +  +Q PA  PS LPT TPPP+T   PPPT T                 
Sbjct: 8   LILVCSIFPIAITNAQTPAASPSNLPTTTPPPTTAAAPPPTTTPPPTTTAPPPTTTPPPS 67

Query: 68  -------------ITPPPNVA-------APSIAPTIPPPQPPQTPPVSTPSLPPVFPPPP 127
                         TPPP          AP+ +P++PPPQPPQ+PP+STPS PP  PPPP
Sbjct: 68  TTPTAPTQPPVSAATPPPATTPASSPKVAPATSPSVPPPQPPQSPPISTPSQPPALPPPP 127

Query: 128 VTPPP-LPPPPATPPPL-PPPLPAPQISPTPLQVAPLPTPPTPVPSP------PMLAPVA 187
            TPPP LPPP  +P P   PP PAP  +P     AP+  PPTP P+P      P  APV+
Sbjct: 128 ATPPPALPPPQVSPTPAQAPPAPAPAKAPPTPAPAPVKAPPTPAPAPVKAPPTPAPAPVS 187

Query: 188 VPELAPAPAPGKHKHRRRHKHKK-HQAPAPAPAVPSPPAPPTVVDSQDDSTAPAPSPNLN 224
           +P  APAPAP KHK +R+HKHK+ H APAPAP VPSPPAPPTV DS+D + APAPS NLN
Sbjct: 188 LPP-APAPAPPKHKKKRKHKHKRHHHAPAPAPTVPSPPAPPTVPDSEDTTPAPAPSLNLN 247

[Close]
BLAST of CmoCh04G021220 vs. NCBI nr
Match: gi|568861793|ref|XP_006484384.1| (PREDICTED: lysine-rich arabinogalactan protein 19 [Citrus sinensis])

HSP 1 Score: 132.5 bits (332), Expect = 9.3e-28
Identity = 127/276 (46.01%), Postives = 156/276 (56.52%), Query Frame = 1 

Query: 8   LLVICLAFLFPLAISQAPAQPPS-LPTATPPPST---PPPTITI---------------- 67
           L+++C  F   +  +Q PA  PS LPT TPPP+T   PPPT T                 
Sbjct: 8   LILVCSIFPIAITNAQTPAASPSNLPTTTPPPTTAAAPPPTTTAPPPTTTPPPTTTAPPP 67

Query: 68  ---------------------TPPPNVA-------APSIAPTIPPPQPPQTPPVSTPSLP 127
                                TPPP          AP+ +P++PPPQPPQ+PP+STPS P
Sbjct: 68  MTTPPPSTTPTAPTQPPVSAATPPPATTPVSSPKVAPATSPSVPPPQPPQSPPISTPSQP 127

Query: 128 PVFPPPPVTPPP-LPPPPATPPPL-PPPLPAPQISPTPLQVAPLPTPPTPVPSP------ 187
           P  PPPP TPPP LPPP  +P P   PP PAP  +P     AP+  PPTP P+P      
Sbjct: 128 PALPPPPATPPPALPPPQVSPTPAQAPPAPAPAKAPPTPAPAPVKAPPTPAPAPVKAPPT 187

Query: 188 PMLAPVAVPELAPAPAPGKHKHRRRHKHKK-HQAPAPAPAVPSPPAPPTVVDSQDDSTAP 224
           P  AP+ +P  APAPAP KHK +R+HKHK+ H APAPAP VPSPPAPPTV DS+D + AP
Sbjct: 188 PAPAPITLPP-APAPAPPKHKKKRKHKHKRHHHAPAPAPTVPSPPAPPTVPDSEDTTPAP 247

The following BLAST results are available for this feature:
BLAST of CmoCh04G021220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP19_ARATH4.5e-2250.74Lysine-rich arabinogalactan protein 19 OS=Arabidopsis thaliana GN=AGP19 PE=2 SV=... [more]
BLAST of CmoCh04G021220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHJ4_CUCSA2.1e-6669.71Uncharacterized protein OS=Cucumis sativus GN=Csa_2G115750 PE=4 SV=1[more]
A0A067FVG5_CITSI5.9e-2947.58Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023867mg PE=4 SV=1[more]
A0A061ECT3_THECC1.6e-2644.44Uncharacterized protein OS=Theobroma cacao GN=TCM_011899 PE=4 SV=1[more]
K4BXI2_SOLLC3.3e-2451.74Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A9PG83_POPTR1.3e-2347.08Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14250g PE=2 SV=1[more]
BLAST of CmoCh04G021220 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68725.12.5e-2350.74 arabinogalactan protein 19[more]
BLAST of CmoCh04G021220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778668213|ref|XP_011649058.1|3.0e-6669.71PREDICTED: lysine-rich arabinogalactan protein 19-like [Cucumis sativus][more]
gi|700206281|gb|KGN61400.1|3.0e-6669.71hypothetical protein Csa_2G115750 [Cucumis sativus][more]
gi|659114696|ref|XP_008457186.1|5.2e-6368.88PREDICTED: lysine-rich arabinogalactan protein 19 [Cucumis melo][more]
gi|641851274|gb|KDO70145.1|8.4e-2947.58hypothetical protein CISIN_1g023867mg [Citrus sinensis][more]
gi|568861793|ref|XP_006484384.1|9.3e-2846.01PREDICTED: lysine-rich arabinogalactan protein 19 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G021220.1CmoCh04G021220.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 38..54
score: 3.3E-10coord: 16..37
score: 3.3E-10coord: 75..100
score: 3.3E-10coord: 55..72
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G021220CmaCh04G020010Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G021220Carg27166Silver-seed gourdcarcmoB0683
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G021220Melon (DHL92) v3.6.1cmomedB719
CmoCh04G021220Watermelon (97103) v2cmowmbB680
CmoCh04G021220Watermelon (97103) v2cmowmbB740
CmoCh04G021220Wax gourdcmowgoB0827
CmoCh04G021220Wax gourdcmowgoB0909
CmoCh04G021220Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G021220Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G021220Cucurbita pepo (Zucchini)cmocpeB685
CmoCh04G021220Bottle gourd (USVL1VR-Ls)cmolsiB613
CmoCh04G021220Bottle gourd (USVL1VR-Ls)cmolsiB618
CmoCh04G021220Cucumber (Gy14) v2cgybcmoB637