CmoCh04G021110 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G021110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
Location	Cmo_Chr04 : 13579804 .. 13580483 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGTCAACTTACAAGCACAAGGCATGTGGGATGTCATCGAGTATGGTGATGTTGAGGAGCGTAAGGATAAGATGGCTCTTGCCGCCATCTACCAAACAGTCTCGAAGGACGTTCTTCTCATGTTGACAGAGAAGGACTCGACAAAGGCAGCATGGGAGACGCTGCAAACAATGCATGTAGGTGTGGAACGTGTCAAGGAAGCAAAGGTGTAGACCTTGAAGAGTGAGTTTGAGGCTATCCGCATGAAGGACTGTGAGTCAATAGACGACTTTTGCAAAAAGAGCTTGAAGTCATTGAGAAGAACTAGACATGGACATTAACTAACTTACCGTCAGGATAGAAGCCCATCTATTTGAAGTGGGTGTTTAAGTTGAAGAAGAATAGTGAAGGAAATGTCATCAAACATAAAGCAAGACTCATGGAAAAGGGATACGTGCAACAACAAGGAGTTAATTTTGAGGAGGTTTTCGCGCCTGTTGCTAAACTAGGCACCGTAAGGTTGATTCTTGCTCTCGCAGCTCAACACAAATGGGAGGTCCCTCACTTGGACATCAAAACAACATTCCTAAATGGTGACCTCCAAGAAGAAGTGTATGTTGCCCAACCTGAAGGGTTCGTCATTAAAGCCGAAGAACACAAAGTGTACAAGTTGTCAAAGACCCTGTATGGTCTATAG

mRNA sequence

ATGCGTGTCAACTTACAAGCACAAGGCATGTGGGATGTCATCGAGTATGGTGATGTTGAGGAGCGTAAGGATAAGATGGCTCTTGCCGCCATCTACCAAACAGTCTCGAAGGACGTTCTTCTCATGTTGACAGAGAAGGACTCGACAAAGGCAGCATGGGAGACGCTGCAAACAATGCATTTGAAGAAGAATAGTGAAGGAAATGTCATCAAACATAAAGCAAGACTCATGGAAAAGGGATACGTGCAACAACAAGGAGTTAATTTTGAGGAGGTTTTCGCGCCTGTTGCTAAACTAGGCACCGTAAGGTTGATTCTTGCTCTCGCAGCTCAACACAAATGGGAGGTCCCTCACTTGGACATCAAAACAACATTCCTAAATGGTGACCTCCAAGAAGAAGTGTATGTTGCCCAACCTGAAGGGTTCGTCATTAAAGCCGAAGAACACAAAGTGTACAAGTTGTCAAAGACCCTGTATGGTCTATAG

Coding sequence (CDS)

ATGCGTGTCAACTTACAAGCACAAGGCATGTGGGATGTCATCGAGTATGGTGATGTTGAGGAGCGTAAGGATAAGATGGCTCTTGCCGCCATCTACCAAACAGTCTCGAAGGACGTTCTTCTCATGTTGACAGAGAAGGACTCGACAAAGGCAGCATGGGAGACGCTGCAAACAATGCATTTGAAGAAGAATAGTGAAGGAAATGTCATCAAACATAAAGCAAGACTCATGGAAAAGGGATACGTGCAACAACAAGGAGTTAATTTTGAGGAGGTTTTCGCGCCTGTTGCTAAACTAGGCACCGTAAGGTTGATTCTTGCTCTCGCAGCTCAACACAAATGGGAGGTCCCTCACTTGGACATCAAAACAACATTCCTAAATGGTGACCTCCAAGAAGAAGTGTATGTTGCCCAACCTGAAGGGTTCGTCATTAAAGCCGAAGAACACAAAGTGTACAAGTTGTCAAAGACCCTGTATGGTCTATAG

Homology

[Close]

BLAST of CmoCh04G021110 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.2e-25
Identity = 57/142 (40.14%), Postives = 94/142 (66.20%), Query Frame = 1


Query: 20  EERKDKMALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEK 79
           E+ +   A+    +++ K+    L E    K   +      LKK+ +  ++++KARL+ K
Sbjct: 822 EKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVK 881

Query: 80  GYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQP 139
           G+ Q++G++F+E+F+PV K+ ++R IL+LAA    EV  LD+KT FL+GDL+EE+Y+ QP
Sbjct: 882 GFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQP 941

Query: 140 EGFVIKAEEHKVYKLSKTLYGL 162
           EGF +  ++H V KL+K+LYGL
Sbjct: 942 EGFEVAGKKHMVCKLNKSLYGL 963

[Close]

BLAST of CmoCh04G021110 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-19
Identity = 47/119 (39.50%), Postives = 76/119 (63.87%), Query Frame = 1


Query: 43   LTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTV 102
            +T++   K   ++     +K N  GN I++KARL+ +G+ Q+  +++EE FAPVA++ + 
Sbjct: 925  ITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSF 984

Query: 103  RLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYKLSKTLYGL 162
            R IL+L  Q+  +V  +D+KT FLNG L+EE+Y+  P+G  I      V KL+K +YGL
Sbjct: 985  RFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGL 1041

[Close]

BLAST of CmoCh04G021110 vs. TrEMBL
Match: Q0J8A6_ORYSJ (Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-35
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 1


Query: 27   ALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQG 86
            A+A   Q + K+    LT   +            LKKN+ G VIKHKARL+ KGYVQ+QG
Sbjct: 930  AMAQELQAIEKNSTWALTALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQG 989

Query: 87   VNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKA 146
            V+FEEVFAPVA+L TVR+ILA+AA  +WEV HLD+K+ FLNGDL+EEVYVAQPEGFV + 
Sbjct: 990  VDFEEVFAPVARLDTVRVILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRG 1049

Query: 147  EEHKVYKLSKTLYGL 162
            EEH V +LSK LYGL
Sbjct: 1050 EEHLVLRLSKALYGL 1064

[Close]

BLAST of CmoCh04G021110 vs. TrEMBL
Match: B8BDZ6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-35
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 1


Query: 27   ALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQG 86
            A+A   Q + K+    LT   +            LKKN+ G VIKHKARL+ KGYVQ+QG
Sbjct: 930  AMAQELQAIEKNSTWALTALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQG 989

Query: 87   VNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKA 146
            V+FEEVFAPVA+L TVR+ILA+AA  +WEV HLD+K+ FLNGDL+EEVYVAQPEGFV + 
Sbjct: 990  VDFEEVFAPVARLDTVRVILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRG 1049

Query: 147  EEHKVYKLSKTLYGL 162
            EEH V +LSK LYGL
Sbjct: 1050 EEHLVLRLSKALYGL 1064

[Close]

BLAST of CmoCh04G021110 vs. TrEMBL
Match: Q84SW8_ORYSJ (Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.3e-34
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 1


Query: 61   LKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLD 120
            LKKN+ G VIKHKARL+ KGYVQ+QGV+F+EVFAPVA+L TVR IL +A   +W+V HLD
Sbjct: 919  LKKNTAGEVIKHKARLVAKGYVQRQGVDFDEVFAPVARLDTVRAILPVAVDRRWQVHHLD 978

Query: 121  IKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYKLSKTLYGL 162
            +K+ FLNGDL+EEVYV+QPEGFV K +EH VYKLSK LYGL
Sbjct: 979  VKSAFLNGDLEEEVYVSQPEGFVEKGKEHLVYKLSKALYGL 1019

[Close]

BLAST of CmoCh04G021110 vs. TrEMBL
Match: W5I9Q0_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 69/101 (68.32%), Postives = 87/101 (86.14%), Query Frame = 1


Query: 61  LKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLD 120
           LKK+S  NV+KHKARL+ KGYVQ+QG++F+EVFAPVA++ TVRL+LALAA   WE+ H+D
Sbjct: 63  LKKDSSRNVVKHKARLVAKGYVQRQGIDFDEVFAPVARMETVRLLLALAANEGWEIHHMD 122

Query: 121 IKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYKLSKTLYGL 162
           +K+ FLNG+L+EEVYVAQP GFV++ EEHKV KL K LYGL
Sbjct: 123 VKSAFLNGELEEEVYVAQPSGFVVEGEEHKVLKLHKALYGL 163

[Close]

BLAST of CmoCh04G021110 vs. TrEMBL
Match: W5ER45_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 69/101 (68.32%), Postives = 87/101 (86.14%), Query Frame = 1


Query: 61  LKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLD 120
           LKK+S  NV+KHKARL+ KGYVQ+QG++F+EVFAPVA++ TVRL+LALAA   WE+ H+D
Sbjct: 63  LKKDSSRNVVKHKARLVAKGYVQRQGIDFDEVFAPVARMETVRLLLALAANEGWEIHHMD 122

Query: 121 IKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYKLSKTLYGL 162
           +K+ FLNG+L+EEVYVAQP GFV++ EEHKV KL K LYGL
Sbjct: 123 VKSAFLNGELEEEVYVAQPSGFVVEGEEHKVLKLHKALYGL 163

[Close]

BLAST of CmoCh04G021110 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-20
Identity = 47/105 (44.76%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 61  LKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLD 120
           +K NS+G + ++KARL+ KGY QQ+G++F E F+PV KL +V+LILA++A + + +  LD
Sbjct: 135 IKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLD 194

Query: 121 IKTTFLNGDLQEEVYVAQPEGFVIKAEE----HKVYKLSKTLYGL 162
           I   FLNGDL EE+Y+  P G+  +  +    + V  L K++YGL
Sbjct: 195 ISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGL 239

[Close]

BLAST of CmoCh04G021110 vs. NCBI nr
Match: gi|113622864|dbj|BAF22809.1| (Os08g0125300 [Oryza sativa Japonica Group])

HSP 1 Score: 155.6 bits (392), Expect = 7.3e-35
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 1


Query: 27   ALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQG 86
            A+A   Q + K+    LT   +            LKKN+ G VIKHKARL+ KGYVQ+QG
Sbjct: 930  AMAQELQAIEKNSTWALTALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQG 989

Query: 87   VNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKA 146
            V+FEEVFAPVA+L TVR+ILA+AA  +WEV HLD+K+ FLNGDL+EEVYVAQPEGFV + 
Sbjct: 990  VDFEEVFAPVARLDTVRVILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRG 1049

Query: 147  EEHKVYKLSKTLYGL 162
            EEH V +LSK LYGL
Sbjct: 1050 EEHLVLRLSKALYGL 1064

[Close]

BLAST of CmoCh04G021110 vs. NCBI nr
Match: gi|218201855|gb|EEC84282.1| (hypothetical protein OsI_30754 [Oryza sativa Indica Group])

HSP 1 Score: 155.6 bits (392), Expect = 7.3e-35
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 1


Query: 27   ALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQG 86
            A+A   Q + K+    LT   +            LKKN+ G VIKHKARL+ KGYVQ+QG
Sbjct: 930  AMAQELQAIEKNSTWALTALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQG 989

Query: 87   VNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKA 146
            V+FEEVFAPVA+L TVR+ILA+AA  +WEV HLD+K+ FLNGDL+EEVYVAQPEGFV + 
Sbjct: 990  VDFEEVFAPVARLDTVRVILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRG 1049

Query: 147  EEHKVYKLSKTLYGL 162
            EEH V +LSK LYGL
Sbjct: 1050 EEHLVLRLSKALYGL 1064

[Close]

BLAST of CmoCh04G021110 vs. NCBI nr
Match: gi|29150404|gb|AAO72413.1| (gag-pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 1


Query: 61   LKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLD 120
            LKKN+ G VIKHKARL+ KGYVQ+QGV+F+EVFAPVA+L TVR IL +A   +W+V HLD
Sbjct: 919  LKKNTAGEVIKHKARLVAKGYVQRQGVDFDEVFAPVARLDTVRAILPVAVDRRWQVHHLD 978

Query: 121  IKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYKLSKTLYGL 162
            +K+ FLNGDL+EEVYV+QPEGFV K +EH VYKLSK LYGL
Sbjct: 979  VKSAFLNGDLEEEVYVSQPEGFVEKGKEHLVYKLSKALYGL 1019

[Close]

BLAST of CmoCh04G021110 vs. NCBI nr
Match: gi|13940610|gb|AAK50412.1|AC021891_13 (Putative retroelement [Oryza sativa Japonica Group])

HSP 1 Score: 149.4 bits (376), Expect = 5.2e-33
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 1


Query: 61  LKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLD 120
           LKKN+ G VIKHKARL+  GYVQQQGV+F+EVFAPVA+L TVR ILA+AA  +W+V HLD
Sbjct: 892 LKKNTAGEVIKHKARLVANGYVQQQGVDFDEVFAPVARLDTVRAILAVAADRRWQVHHLD 951

Query: 121 IKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYKLSKTLYGL 162
           +K+ FLNGDL+EEVYV+Q EGFV K +EH VY+LSK LYGL
Sbjct: 952 VKSAFLNGDLEEEVYVSQLEGFVEKGKEHLVYELSKALYGL 992

[Close]

BLAST of CmoCh04G021110 vs. NCBI nr
Match: gi|110289052|gb|ABB47537.2| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 149.4 bits (376), Expect = 5.2e-33
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 1


Query: 61  LKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLD 120
           LKKN+ G VIKHKARL+  GYVQQQGV+F+EVFAPVA+L TVR ILA+AA  +W+V HLD
Sbjct: 759 LKKNTAGEVIKHKARLVANGYVQQQGVDFDEVFAPVARLDTVRAILAVAADRRWQVHHLD 818

Query: 121 IKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYKLSKTLYGL 162
           +K+ FLNGDL+EEVYV+Q EGFV K +EH VY+LSK LYGL
Sbjct: 819 VKSAFLNGDLEEEVYVSQLEGFVEKGKEHLVYELSKALYGL 859

The following BLAST results are available for this feature:

BLAST of CmoCh04G021110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	5.2e-25	40.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	3.3e-19	39.50	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]

BLAST of CmoCh04G021110 vs. TrEMBL


Match Name	E-value	Identity	Description
Q0J8A6_ORYSJ	5.1e-35	60.00	Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1	[more]
B8BDZ6_ORYSI	5.1e-35	60.00	Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4...	[more]
Q84SW8_ORYSJ	7.3e-34	71.29	Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1	[more]
W5I9Q0_WHEAT	1.6e-33	68.32	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
W5ER45_WHEAT	1.6e-33	68.32	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]

BLAST of CmoCh04G021110 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	1.4e-20	44.76	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

BLAST of CmoCh04G021110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|113622864\|dbj\|BAF22809.1\|	7.3e-35	60.00	Os08g0125300 [Oryza sativa Japonica Group]	[more]
gi\|218201855\|gb\|EEC84282.1\|	7.3e-35	60.00	hypothetical protein OsI_30754 [Oryza sativa Indica Group]	[more]
gi\|29150404\|gb\|AAO72413.1\|	1.1e-33	71.29	gag-pol polyprotein [Oryza sativa Japonica Group]	[more]
gi\|13940610\|gb\|AAK50412.1\|AC021891_13	5.2e-33	71.29	Putative retroelement [Oryza sativa Japonica Group]	[more]
gi\|110289052\|gb\|ABB47537.2\|	5.2e-33	71.29	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G021110.1	CmoCh04G021110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 60..161 score: 1.0
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 61..161 score: 4.2
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 61..161 score: 4.2
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 21..69 score: 1.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G021110	Wax gourd	cmowgoB0900
CmoCh04G021110	Cucurbita moschata (Rifu)	cmocmoB338
CmoCh04G021110	Cucumber (Gy14) v1	cgycmoB0796
CmoCh04G021110	Wild cucumber (PI 183967)	cmocpiB762
CmoCh04G021110	Cucumber (Chinese Long) v2	cmocuB754
CmoCh04G021110	Melon (DHL92) v3.5.1	cmomeB642
CmoCh04G021110	Watermelon (Charleston Gray)	cmowcgB657
CmoCh04G021110	Watermelon (97103) v1	cmowmB696
CmoCh04G021110	Cucurbita pepo (Zucchini)	cmocpeB652
CmoCh04G021110	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G021110	Cucurbita pepo (Zucchini)	cmocpeB682
CmoCh04G021110	Cucurbita pepo (Zucchini)	cmocpeB685
CmoCh04G021110	Bottle gourd (USVL1VR-Ls)	cmolsiB618
CmoCh04G021110	Bottle gourd (USVL1VR-Ls)	cmolsiB665
CmoCh04G021110	Cucumber (Gy14) v2	cgybcmoB668
CmoCh04G021110	Melon (DHL92) v3.6.1	cmomedB727
CmoCh04G021110	Silver-seed gourd	carcmoB1141
CmoCh04G021110	Cucumber (Chinese Long) v3	cmocucB0889
CmoCh04G021110	Watermelon (97103) v2	cmowmbB731