CmoCh04G021100 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G021100
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, putative, unclassified
Location	Cmo_Chr04 : 13579089 .. 13579679 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTTGATAACCTAATCGTCACTAGTACAAGTGTGGAAGGTGTTAAAGAGTTTAAGCAGCAAATGATGAAAGAATTTGAGATGACTGATCTCGGGCCACTCCCGTACTACCTCGGTATTGAAGTGGACCAAAGAAAAGATTGCATAATGCTAAAGCAATCAACCTATGCTAAGAATTTGTTGCAGCAATTTAAGATGGCAGAGTGCAACCCAACCAAGTATCCCATGAAAGCGAAGTTATAACTTGGGAAAGATGTTGAAGGAAACTTGGTGAATTCCACTGAGTATATGCGTGTCATCGGAAGTCTAAGGTACTTGACTCATACTCGTCCGGGCCTTTCATATGCTATTGGAATAATGAGTAGGTACATGGAAAAGCCCATTGTGATGCATCATCAAGAGGTTAACCACATTCTCCGCTATGTGAAGGGAACCACAAGCTACCGGTTGAAGTATCAAGGAGGGCGAAGTCCTGAAGAACTAGTCGATTTTACTGATAGTGATTTAGCTAGAGATATTGACAATAGAAAAAGAACCACAGGAATGACATTTTATCTCAACAAAAATTTGATTTCTTGGCAATCTTAG

mRNA sequence

ATGTATGTTGATAACCTAATCGTCACTAGTACAAGTGTGGAAGGTGTTAAAGAGTTTAAGCAGCAAATGATGAAAGAATTTGAGATGACTGATCTCGGGCCACTCCCGTACTACCTCGGTATTGAAGTGGACCAAAGAAAAGATTGCATAATGCTAAAGCAATCAACCTATGCTAAGAATTTGTTGCAGCAATTTAAGATGGCAGAGTGCAACCCAACCAAGTACATGGAAAAGCCCATTGTGATGCATCATCAAGAGGTTAACCACATTCTCCGCTATGTGAAGGGAACCACAAGCTACCGGTTGAAGTATCAAGGAGGGCGAAGTCCTGAAGAACTAGTCGATTTTACTGATAGTGATTTAGCTAGAGATATTGACAATAGAAAAAGAACCACAGGAATGACATTTTATCTCAACAAAAATTTGATTTCTTGGCAATCTTAG

Coding sequence (CDS)

ATGTATGTTGATAACCTAATCGTCACTAGTACAAGTGTGGAAGGTGTTAAAGAGTTTAAGCAGCAAATGATGAAAGAATTTGAGATGACTGATCTCGGGCCACTCCCGTACTACCTCGGTATTGAAGTGGACCAAAGAAAAGATTGCATAATGCTAAAGCAATCAACCTATGCTAAGAATTTGTTGCAGCAATTTAAGATGGCAGAGTGCAACCCAACCAAGTACATGGAAAAGCCCATTGTGATGCATCATCAAGAGGTTAACCACATTCTCCGCTATGTGAAGGGAACCACAAGCTACCGGTTGAAGTATCAAGGAGGGCGAAGTCCTGAAGAACTAGTCGATTTTACTGATAGTGATTTAGCTAGAGATATTGACAATAGAAAAAGAACCACAGGAATGACATTTTATCTCAACAAAAATTTGATTTCTTGGCAATCTTAG

Homology

[Close]

BLAST of CmoCh04G021100 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-10
Identity = 25/71 (35.21%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 1    MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
            +YVD++++ +  +  +  FK+ +M++F MTDL  + +++GI ++ ++D I L QS Y K 
Sbjct: 1086 LYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKK 1145

Query: 61   LLQQFKMAECN 72
            +L +F M  CN
Sbjct: 1146 ILSKFNMENCN 1156

[Close]

BLAST of CmoCh04G021100 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1


Query: 73   TKYMEKPIVMHHQEVNHILRYVKGTTSYRLKYQGGRSPEELVDFTDSDLARDIDNRKRTT 132
            ++++E P   H + V  ILRY++GTT   L + GG  P  L  +TD+D+A DIDNRK +T
Sbjct: 1137 SRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-GGSDPI-LKGYTDADMAGDIDNRKSST 1196

Query: 133  GMTFYLNKNLISWQS 148
            G  F  +   ISWQS
Sbjct: 1197 GYLFTFSGGAISWQS 1209

[Close]

BLAST of CmoCh04G021100 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06
Identity = 24/72 (33.33%), Postives = 41/72 (56.94%), Query Frame = 1


Query: 1  MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
          +YVD++++T +S   +     Q+   F M DLGP+ Y+LGI++      + L Q+ YA+ 
Sbjct: 5  LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 61 LLQQFKMAECNP 73
          +L    M +C P
Sbjct: 65 ILNNAGMLDCKP 76

[Close]

BLAST of CmoCh04G021100 vs. TrEMBL
Match: Q2QYR6_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g01790 PE=4 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-29
Identity = 69/155 (44.52%), Postives = 102/155 (65.81%), Query Frame = 1


Query: 1    MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
            +YVD+L++T      +KEFK +M+++F+M+DLG L YYLGI V Q  + I L QS YA  
Sbjct: 1050 VYVDDLLITGQDAGDIKEFKLEMLQQFKMSDLGLLSYYLGIGVRQDHNGISLSQSAYALK 1109

Query: 61   LLQQFKMAECNP-------TKYMEKPIVMHHQEVNHILRYVKGTTSYRLKYQGGRSPE-E 120
            LL++  M +CNP        ++M +P   H   V HILRY+ GT  + + Y GG++ E +
Sbjct: 1110 LLEKTGMVDCNPCHAPMEANRFMAEPREDHMAAVKHILRYIAGTRDHGVSYSGGKTEELK 1169

Query: 121  LVDFTDSDLARDIDNRKRTTGMTFYLNKNLISWQS 148
            L  ++DSD+A D+D+RK TTG+ F+L +N I+WQS
Sbjct: 1170 LTGYSDSDMAGDVDDRKSTTGVLFFLAQNPITWQS 1204

[Close]

BLAST of CmoCh04G021100 vs. TrEMBL
Match: Q84SW8_ORYSJ (Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.3e-26
Identity = 68/156 (43.59%), Postives = 93/156 (59.62%), Query Frame = 1


Query: 1    MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
            +YVD+LIVT  S   +  FKQQMM EFEM+DLG L YYLGIE+ +      +  + Y + 
Sbjct: 1062 VYVDDLIVTGESPSDITAFKQQMMGEFEMSDLGLLTYYLGIELHKDAQGSTVDPTEYRRV 1121

Query: 61   LLQQFKMAECNP---------TKYMEKPIVMHHQEVNHILRYVKGTTSYRLKYQGGRSPE 120
            +     +    P         +++ME+P VMH + V  ILRY+KGT +  L + GG    
Sbjct: 1122 IGCLRYLLHTRPDLSYAVGVASRFMERPTVMHFKAVKQILRYLKGTINCGLMFSGGNGAV 1181

Query: 121  ELVDFTDSDLARDIDNRKRTTGMTFYLNKNLISWQS 148
            E+  FTDSDLA D D+R+ T+GM FY N +L+SW S
Sbjct: 1182 EITGFTDSDLAGDSDDRRSTSGMAFYFNGSLVSWSS 1217

[Close]

BLAST of CmoCh04G021100 vs. TrEMBL
Match: Q9AUM6_ORYSJ (Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0067E01.5 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-25
Identity = 67/174 (38.51%), Postives = 97/174 (55.75%), Query Frame = 1


Query: 1    MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
            +YVD+L++T T    V+ FK++M   F+M+DLG L +YLGIEV Q    I L+Q+ YAK 
Sbjct: 1421 VYVDDLVITGTKEAEVEAFKEEMKATFQMSDLGLLSFYLGIEVHQDSSGISLRQTAYAKR 1480

Query: 61   LLQQFKMAECN---------------------------PTKYMEKPIVMHHQEVNHILRY 120
            +++   +  CN                            +++M++P   H Q V  ILRY
Sbjct: 1481 IVELGGLTGCNLAYTPMEERLKLSRDSTAEEIWHSLLAVSRFMQRPTTEHQQAVKRILRY 1540

Query: 121  VKGTTSYRLKYQGGRSPEELVDFTDSDLARDIDNRKRTTGMTFYLNKNLISWQS 148
            V+GTT+Y L Y      +  + ++DSDLA D D  K T+GM F+L+K LISWQS
Sbjct: 1541 VEGTTNYGLHYPRCPGAQHFIGYSDSDLAGDSDTSKSTSGMLFFLSKCLISWQS 1594

[Close]

BLAST of CmoCh04G021100 vs. TrEMBL
Match: Q10F54_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os03g47702 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-25
Identity = 67/174 (38.51%), Postives = 97/174 (55.75%), Query Frame = 1


Query: 1    MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
            +YVD+L++T T    V+ FK++M   F+M+DLG L +YLGIEV Q    I L+Q+ YAK 
Sbjct: 1901 VYVDDLVITGTKEAEVEAFKEEMKATFQMSDLGLLSFYLGIEVHQDSSGISLRQTAYAKR 1960

Query: 61   LLQQFKMAECN---------------------------PTKYMEKPIVMHHQEVNHILRY 120
            +++   +  CN                            +++M++P   H Q V  ILRY
Sbjct: 1961 IVELGGLTGCNLAYTPMEERLKLSRDSTAEEIWHSLLAVSRFMQRPTTEHQQAVKRILRY 2020

Query: 121  VKGTTSYRLKYQGGRSPEELVDFTDSDLARDIDNRKRTTGMTFYLNKNLISWQS 148
            V+GTT+Y L Y      +  + ++DSDLA D D  K T+GM F+L+K LISWQS
Sbjct: 2021 VEGTTNYGLHYPRCPGAQHFIGYSDSDLAGDSDTSKSTSGMLFFLSKCLISWQS 2074

[Close]

BLAST of CmoCh04G021100 vs. TrEMBL
Match: C7IZC8_ORYSJ (Os03g0680566 protein OS=Oryza sativa subsp. japonica GN=Os03g0680566 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.7e-25
Identity = 68/170 (40.00%), Postives = 94/170 (55.29%), Query Frame = 1


Query: 1    MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
            +YVD+L++T T    V+ FK++M   F+M+DLG L +YLGIEV Q    I L+Q+ YAK 
Sbjct: 1400 VYVDDLVITGTKEAEVEAFKEEMKATFQMSDLGLLSFYLGIEVHQDSSGISLRQTAYAKR 1459

Query: 61   LLQQFKMAECN----------------------PTKYME-KPIVMHHQEVNHILRYVKGT 120
            +++   +  CN                       T Y   +P   H Q V  ILRYV+GT
Sbjct: 1460 IVELGGLTGCNLAYTPMEERLKLSRDSTAEEVDATPYQRIRPTTEHQQAVKRILRYVEGT 1519

Query: 121  TSYRLKYQGGRSPEELVDFTDSDLARDIDNRKRTTGMTFYLNKNLISWQS 148
            T+Y L Y      +  + ++DSDLA D D  K T+GM F+L+K LISWQS
Sbjct: 1520 TNYGLHYPRCPGAQHFIGYSDSDLAGDSDTSKSTSGMLFFLSKCLISWQS 1569

[Close]

BLAST of CmoCh04G021100 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 24/72 (33.33%), Postives = 41/72 (56.94%), Query Frame = 1


Query: 1  MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
          +YVD++++T +S   +     Q+   F M DLGP+ Y+LGI++      + L Q+ YA+ 
Sbjct: 5  LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 61 LLQQFKMAECNP 73
          +L    M +C P
Sbjct: 65 ILNNAGMLDCKP 76

[Close]

BLAST of CmoCh04G021100 vs. NCBI nr
Match: gi|108862086|gb|ABA96192.2| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-29
Identity = 69/155 (44.52%), Postives = 102/155 (65.81%), Query Frame = 1


Query: 1    MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
            +YVD+L++T      +KEFK +M+++F+M+DLG L YYLGI V Q  + I L QS YA  
Sbjct: 1050 VYVDDLLITGQDAGDIKEFKLEMLQQFKMSDLGLLSYYLGIGVRQDHNGISLSQSAYALK 1109

Query: 61   LLQQFKMAECNP-------TKYMEKPIVMHHQEVNHILRYVKGTTSYRLKYQGGRSPE-E 120
            LL++  M +CNP        ++M +P   H   V HILRY+ GT  + + Y GG++ E +
Sbjct: 1110 LLEKTGMVDCNPCHAPMEANRFMAEPREDHMAAVKHILRYIAGTRDHGVSYSGGKTEELK 1169

Query: 121  LVDFTDSDLARDIDNRKRTTGMTFYLNKNLISWQS 148
            L  ++DSD+A D+D+RK TTG+ F+L +N I+WQS
Sbjct: 1170 LTGYSDSDMAGDVDDRKSTTGVLFFLAQNPITWQS 1204

[Close]

BLAST of CmoCh04G021100 vs. NCBI nr
Match: gi|29150404|gb|AAO72413.1| (gag-pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-26
Identity = 68/156 (43.59%), Postives = 93/156 (59.62%), Query Frame = 1


Query: 1    MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
            +YVD+LIVT  S   +  FKQQMM EFEM+DLG L YYLGIE+ +      +  + Y + 
Sbjct: 1062 VYVDDLIVTGESPSDITAFKQQMMGEFEMSDLGLLTYYLGIELHKDAQGSTVDPTEYRRV 1121

Query: 61   LLQQFKMAECNP---------TKYMEKPIVMHHQEVNHILRYVKGTTSYRLKYQGGRSPE 120
            +     +    P         +++ME+P VMH + V  ILRY+KGT +  L + GG    
Sbjct: 1122 IGCLRYLLHTRPDLSYAVGVASRFMERPTVMHFKAVKQILRYLKGTINCGLMFSGGNGAV 1181

Query: 121  ELVDFTDSDLARDIDNRKRTTGMTFYLNKNLISWQS 148
            E+  FTDSDLA D D+R+ T+GM FY N +L+SW S
Sbjct: 1182 EITGFTDSDLAGDSDDRRSTSGMAFYFNGSLVSWSS 1217

[Close]

BLAST of CmoCh04G021100 vs. NCBI nr
Match: gi|108710414|gb|ABF98209.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 67/174 (38.51%), Postives = 97/174 (55.75%), Query Frame = 1


Query: 1    MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
            +YVD+L++T T    V+ FK++M   F+M+DLG L +YLGIEV Q    I L+Q+ YAK 
Sbjct: 1901 VYVDDLVITGTKEAEVEAFKEEMKATFQMSDLGLLSFYLGIEVHQDSSGISLRQTAYAKR 1960

Query: 61   LLQQFKMAECN---------------------------PTKYMEKPIVMHHQEVNHILRY 120
            +++   +  CN                            +++M++P   H Q V  ILRY
Sbjct: 1961 IVELGGLTGCNLAYTPMEERLKLSRDSTAEEIWHSLLAVSRFMQRPTTEHQQAVKRILRY 2020

Query: 121  VKGTTSYRLKYQGGRSPEELVDFTDSDLARDIDNRKRTTGMTFYLNKNLISWQS 148
            V+GTT+Y L Y      +  + ++DSDLA D D  K T+GM F+L+K LISWQS
Sbjct: 2021 VEGTTNYGLHYPRCPGAQHFIGYSDSDLAGDSDTSKSTSGMLFFLSKCLISWQS 2074

[Close]

BLAST of CmoCh04G021100 vs. NCBI nr
Match: gi|13435243|gb|AAK26118.1|AC084406_1 (putative gag-pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 67/174 (38.51%), Postives = 97/174 (55.75%), Query Frame = 1


Query: 1    MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
            +YVD+L++T T    V+ FK++M   F+M+DLG L +YLGIEV Q    I L+Q+ YAK 
Sbjct: 1421 VYVDDLVITGTKEAEVEAFKEEMKATFQMSDLGLLSFYLGIEVHQDSSGISLRQTAYAKR 1480

Query: 61   LLQQFKMAECN---------------------------PTKYMEKPIVMHHQEVNHILRY 120
            +++   +  CN                            +++M++P   H Q V  ILRY
Sbjct: 1481 IVELGGLTGCNLAYTPMEERLKLSRDSTAEEIWHSLLAVSRFMQRPTTEHQQAVKRILRY 1540

Query: 121  VKGTTSYRLKYQGGRSPEELVDFTDSDLARDIDNRKRTTGMTFYLNKNLISWQS 148
            V+GTT+Y L Y      +  + ++DSDLA D D  K T+GM F+L+K LISWQS
Sbjct: 1541 VEGTTNYGLHYPRCPGAQHFIGYSDSDLAGDSDTSKSTSGMLFFLSKCLISWQS 1594

[Close]

BLAST of CmoCh04G021100 vs. NCBI nr
Match: gi|255674783|dbj|BAH92311.1| (Os03g0680566 [Oryza sativa Japonica Group])

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 68/170 (40.00%), Postives = 94/170 (55.29%), Query Frame = 1


Query: 1    MYVDNLIVTSTSVEGVKEFKQQMMKEFEMTDLGPLPYYLGIEVDQRKDCIMLKQSTYAKN 60
            +YVD+L++T T    V+ FK++M   F+M+DLG L +YLGIEV Q    I L+Q+ YAK 
Sbjct: 1400 VYVDDLVITGTKEAEVEAFKEEMKATFQMSDLGLLSFYLGIEVHQDSSGISLRQTAYAKR 1459

Query: 61   LLQQFKMAECN----------------------PTKYME-KPIVMHHQEVNHILRYVKGT 120
            +++   +  CN                       T Y   +P   H Q V  ILRYV+GT
Sbjct: 1460 IVELGGLTGCNLAYTPMEERLKLSRDSTAEEVDATPYQRIRPTTEHQQAVKRILRYVEGT 1519

Query: 121  TSYRLKYQGGRSPEELVDFTDSDLARDIDNRKRTTGMTFYLNKNLISWQS 148
            T+Y L Y      +  + ++DSDLA D D  K T+GM F+L+K LISWQS
Sbjct: 1520 TNYGLHYPRCPGAQHFIGYSDSDLAGDSDTSKSTSGMLFFLSKCLISWQS 1569

The following BLAST results are available for this feature:

BLAST of CmoCh04G021100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COPIA_DROME	5.7e-10	35.21	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
POLX_TOBAC	1.4e-08	45.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
M810_ARATH	2.2e-06	33.33	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CmoCh04G021100 vs. TrEMBL


Match Name	E-value	Identity	Description
Q2QYR6_ORYSJ	1.7e-29	44.52	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]
Q84SW8_ORYSJ	2.3e-26	43.59	Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1	[more]
Q9AUM6_ORYSJ	1.1e-25	38.51	Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0067E01.5 ...	[more]
Q10F54_ORYSJ	1.1e-25	38.51	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]
C7IZC8_ORYSJ	9.7e-25	40.00	Os03g0680566 protein OS=Oryza sativa subsp. japonica GN=Os03g0680566 PE=4 SV=1	[more]

BLAST of CmoCh04G021100 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00810.1	1.3e-07	33.33	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CmoCh04G021100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|108862086\|gb\|ABA96192.2\|	2.5e-29	44.52	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]
gi\|29150404\|gb\|AAO72413.1\|	3.3e-26	43.59	gag-pol polyprotein [Oryza sativa Japonica Group]	[more]
gi\|108710414\|gb\|ABF98209.1\|	1.6e-25	38.51	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]
gi\|13435243\|gb\|AAK26118.1\|AC084406_1	1.6e-25	38.51	putative gag-pol polyprotein [Oryza sativa Japonica Group]	[more]
gi\|255674783\|dbj\|BAH92311.1\|	1.4e-24	40.00	Os03g0680566 [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G021100.1	CmoCh04G021100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..74 score: 1.2
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..147 score: 1.7
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 1..147 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G021100	Cucurbita moschata (Rifu)	cmocmoB338
CmoCh04G021100	Cucumber (Gy14) v1	cgycmoB0796
CmoCh04G021100	Wild cucumber (PI 183967)	cmocpiB762
CmoCh04G021100	Cucumber (Chinese Long) v2	cmocuB754
CmoCh04G021100	Melon (DHL92) v3.5.1	cmomeB642
CmoCh04G021100	Watermelon (Charleston Gray)	cmowcgB657
CmoCh04G021100	Watermelon (97103) v1	cmowmB696
CmoCh04G021100	Cucurbita pepo (Zucchini)	cmocpeB652
CmoCh04G021100	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G021100	Cucurbita pepo (Zucchini)	cmocpeB682
CmoCh04G021100	Cucurbita pepo (Zucchini)	cmocpeB685
CmoCh04G021100	Bottle gourd (USVL1VR-Ls)	cmolsiB618
CmoCh04G021100	Bottle gourd (USVL1VR-Ls)	cmolsiB665
CmoCh04G021100	Cucumber (Gy14) v2	cgybcmoB668
CmoCh04G021100	Melon (DHL92) v3.6.1	cmomedB727
CmoCh04G021100	Silver-seed gourd	carcmoB1141
CmoCh04G021100	Cucumber (Chinese Long) v3	cmocucB0889
CmoCh04G021100	Watermelon (97103) v2	cmowmbB731
CmoCh04G021100	Wax gourd	cmowgoB0900