CmoCh04G021010 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G021010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Retrovirus-related Pol polyprotein from transposon TNT 1-94) (3.1.13.-)
LocationCmo_Chr04 : 13173060 .. 13175246 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGATTGAAGATTATCTGTACCAGAAAAATATTCACGAACCCCTATTGGAGGTTAAGCTGGATACTATGACCACGGAACAATGGAAGCTCAAGGATCAACAGGTCTTAGGGTTGATCCTGGTGACGCTGTCCAGAAACGTGGCGTTCAACATTATCAAAGAGAAGACAACGTTAGGTATGTTGAAGGCGTTGTCGAATTTCTATGAAAAACCATCGACTATAAACAAGGTGTATTTGATGCAGAGATTGTTCAATCTACAAATGTCTGAAGGTGGATCTGTTGCTAATCATATAAATGAATTCAATATGATTGTAAGAAAACCGAGTTCGGTGGAAATTAATTTTGAAGATGAAATTAAAGCATTGATTTTGATGTCATCTTTACCCGAGTCATGGGATACTGTTATTGCCGCGACTAGTAGTTTCCAAGGATCTGAGAAACTCAAGTTCAATGAAATCCAAGATATAGTTATTAGTGAGAGTATTCCCAAACGAGAAATTGAGGATTCATCTGGTAGAGATCCTAGTGTTGACCAAAGGGGAAAAAGTAAATCGAAGGGTCCAAACAAATGCCGATCAAAATAAAAAAAAAACCGTAAAAATTTTCCAAATAGACCAAACATGACGTGTTGAAGTTGTGGAAAAAATGGTCACTTTCAGACAGATTGTACAAGACCAAAGAGGAAGCAAAATCACAAGTTAGAGGATGACGATGATTCTATAAATTCAGCAGAAGATATTGAGGATGCTCTAATCCTTAGTGTGGACAATCCGATTGAATCCTAGATTTTGGAATCAGGTGTATCTTTTCATTCGTCTCCAAATAAAGAGTTGTTTTAGAATTTCAAGTCTGAAAATTTCGAGATGACATACCTTGCCGACAACAAAATCTTGAATATTGAAGGAAAATGGTATGTCTATATAAAAACTCAGGTAGAAAATCAGTGAACATTAAAGGATGTCAGAAATATGTTCTTGGTCTCAAGAAGAACTAGATCTCTATTAGTCAGTTGGATAGCACATGTTGTGCAATAGAATTTGGGAAGAGTTCGTGGAAGATTGTGAAGGGTGCTATGGTGGTAGCACGTGGCACAAAATTTAGAACCCCATACACCACTTTAGGGTGTATGAACATGGCTGCTGTTGCTAAGAGTGATTCAAATTCAAGTTTATGGCACAATAGACTTGAACATACGAGCGTCAAAGGAATGAAGATGCTGGTTGTGGAAGTAGTTTTGGAAGGTTTGAAATCTATTGATATGAGTACTTGTGAGAACTGCGTTATGAGCAAACAGAAACTAGTTAGCTTCACAAAGGCTGCCAAATAATTAAAGAAAGTGCGGTTGGAAATGGTCAATACAGACGTTTGGGGACCATCTTCAATTCCATCACTTGGCGGATCAAAGTTCTACTTCACCTTTATCGATGATTTTAGTAGGAAGGTGTGGATTTATTTCTTGAAACACAAGTCAGATGTGTTTGCCACCTTCAAGAAGTGAAAAGCTGAAGTTCAAAATCAGACCGGCTTGAATATCAAATGCTTGAGGTCTGACAATGAAGGAGAGTATGACAAGTCAGAATTCAAAGCATTTTGTGAAGCTGAAGAAATTTGATTAATGAGGACAATTCTCGGTAAAGCAAGACAAAATGGATTTGCTGAAACGATGAATAAAACATTGAATGAGCGACAAAGAGTAAGAGGTTTCATTCTAGATTGCCAAAAATATTTTGGGTTGATGCTATAATACAGCAGTCTACTTGATCAATAGAGAGCCGTTAGTACCCTTGGAGTTCAAGTTGCCAGAAGAAACATGGACAAAAAAAGAACTCAAGTACTCTCACTTGAGAACTTTTGGTTGCACTGCGTATGTTCGTATTGATCCAGAGAAGAGTGACTAGCTTTACGCTGAGGCTGTGAAGCGCTATTTCATAGGCTATAGGTCTGACATGTCCGAGTACTTGTTTTGGGATGATAAGAACATAAAAGTCCTAAGACATTGTGACGTGACCTTTGATGAAAATTTCATGTACAAGAACAAAAAGAAGAAAGGAGAGAAGAAAGGTTCCAAGACAATGAAGCAATTGGGAGTTGAGGTTAAGTTGTTGAAAGATTCACCTAGTGATGTTGTAGCAAATACTCAAGAAACTCTTGAGACTATTGCTGAGGAACCAGAGGTGGAGTAA

mRNA sequence

ATGCAGATTGAAGATTATCTGTACCAGAAAAATATTCACGAACCCCTATTGGAGGTTAAGCTGGATACTATGACCACGGAACAATGGAAGCTCAAGGATCAACAGGTCTTAGGGTTGATCCTGGTGACGCTGTCCAGAAACGTGGCGTTCAACATTATCAAAGAGAAGACAACGTTAGGTATGTTGAAGGCGTTGTCGAATTTCTATGAAAAACCATCGACTATAAACAAGGTGTATTTGATGCAGAGATTGTTCAATCTACAAATGTCTGAAGGTGGATCTGTTGCTAATCATATAAATGAATTCAATATGATTGTAAGAAAACCGAGTTCGGTGGAAATTAATTTTGAAGATGAAATTAAAGCATTGATTTTGATGTCATCTTTACCCGAGTCATGGGATACTGTTATTGCCGCGACTAGTAGTTTCCAAGGATCTGAGAAACTCAAGTTCAATGAAATCCAAGATATAGTTATTAGTGAGAGTATTCCCAAACGAGAAATTGAGGATTCATCTGGTAGAGATCCTAGTGTTGACCAAAGGGGAAAAAAATTTGGGAAGAGTTCGTGGAAGATTGTGAAGGGTGCTATGGTGGTAGCACGTGGCACAAAATTTAGAACCCCATACACCACTTTAGGGTGTATGAACATGGCTGCTGTTGCTAAGAGTGATTCAAATTCAAGTTTATGGCACAATAGACTTGAACATACGAGCGTCAAAGGAATGAAGATGCTGGTTGTGGAAGTAGTTTTGGAAGGCTATAGGTCTGACATGTCCGAGTACTTGTTTTGGGATGATAAGAACATAAAAGTCCTAAGACATTGTGACGTGACCTTTGATGAAAATTTCATGTACAAGAACAAAAAGAAGAAAGGAGAGAAGAAAGGTTCCAAGACAATGAAGCAATTGGGAGTTGAGGTTAAGTTGTTGAAAGATTCACCTAGTGATGTTGTAGCAAATACTCAAGAAACTCTTGAGACTATTGCTGAGGAACCAGAGGTGGAGTAA

Coding sequence (CDS)

ATGCAGATTGAAGATTATCTGTACCAGAAAAATATTCACGAACCCCTATTGGAGGTTAAGCTGGATACTATGACCACGGAACAATGGAAGCTCAAGGATCAACAGGTCTTAGGGTTGATCCTGGTGACGCTGTCCAGAAACGTGGCGTTCAACATTATCAAAGAGAAGACAACGTTAGGTATGTTGAAGGCGTTGTCGAATTTCTATGAAAAACCATCGACTATAAACAAGGTGTATTTGATGCAGAGATTGTTCAATCTACAAATGTCTGAAGGTGGATCTGTTGCTAATCATATAAATGAATTCAATATGATTGTAAGAAAACCGAGTTCGGTGGAAATTAATTTTGAAGATGAAATTAAAGCATTGATTTTGATGTCATCTTTACCCGAGTCATGGGATACTGTTATTGCCGCGACTAGTAGTTTCCAAGGATCTGAGAAACTCAAGTTCAATGAAATCCAAGATATAGTTATTAGTGAGAGTATTCCCAAACGAGAAATTGAGGATTCATCTGGTAGAGATCCTAGTGTTGACCAAAGGGGAAAAAAATTTGGGAAGAGTTCGTGGAAGATTGTGAAGGGTGCTATGGTGGTAGCACGTGGCACAAAATTTAGAACCCCATACACCACTTTAGGGTGTATGAACATGGCTGCTGTTGCTAAGAGTGATTCAAATTCAAGTTTATGGCACAATAGACTTGAACATACGAGCGTCAAAGGAATGAAGATGCTGGTTGTGGAAGTAGTTTTGGAAGGCTATAGGTCTGACATGTCCGAGTACTTGTTTTGGGATGATAAGAACATAAAAGTCCTAAGACATTGTGACGTGACCTTTGATGAAAATTTCATGTACAAGAACAAAAAGAAGAAAGGAGAGAAGAAAGGTTCCAAGACAATGAAGCAATTGGGAGTTGAGGTTAAGTTGTTGAAAGATTCACCTAGTGATGTTGTAGCAAATACTCAAGAAACTCTTGAGACTATTGCTGAGGAACCAGAGGTGGAGTAA
Homology
[Close]
BLAST of CmoCh04G021010 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.9e-18
Identity = 59/192 (30.73%), Postives = 112/192 (58.33%), Query Frame = 1 

Query: 2   QIEDYLYQKNIHEPLLEV---KLDTMTTEQWKLKDQQVLGLILVTLSRNVAFNIIKEKTT 61
           ++ D L Q+ +H+ +L+V   K DTM  E W   D++    I + LS +V  NII E T 
Sbjct: 23  RMRDLLIQQGLHK-VLDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTA 82

Query: 62  LGMLKALSNFYEKPSTINKVYLMQRLFNLQMSEGGSVANHINEFNMIVRKPSSVEINFED 121
            G+   L + Y   +  NK+YL ++L+ L MSEG +  +H+N FN ++ + +++ +  E+
Sbjct: 83  RGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEE 142

Query: 122 EIKALILMSSLPESWDTVIAATSSFQGSEKLKFNEIQD-IVISESIPKREIEDSSGRDPS 181
           E KA++L++SLP S+D +  AT+   G   ++  ++   ++++E + K+   ++ G+   
Sbjct: 143 EDKAILLLNSLPSSYDNL--ATTILHGKTTIELKDVTSALLLNEKMRKK--PENQGQALI 202

Query: 182 VDQRGKKFGKSS 190
            + RG+ + +SS
Sbjct: 203 TEGRGRSYQRSS 209

[Close]
BLAST of CmoCh04G021010 vs. TrEMBL
Match: K4BR07_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.5e-54
Identity = 113/160 (70.62%), Postives = 134/160 (83.75%), Query Frame = 1 

Query: 24  MTTEQWKLKDQQVLGLILVTLSRNVAFNIIKEKTTLGMLKALSNFYEKPSTINKVYLMQR 83
           MT E+WKLKD+Q LGLI +TL RNVAFNI+KEKTT  +LK LSN YEKPS +NKVYLM R
Sbjct: 1   MTEEKWKLKDRQTLGLIRLTLLRNVAFNIVKEKTTSDLLKTLSNMYEKPSVMNKVYLMHR 60

Query: 84  LFNLQMSEGGSVANHINEFNMIVRKPSSVEINFEDEIKALILMSSLPESWDTVIAATSSF 143
            FNLQM E GSV++H+NEFN+IV + +SV+IN EDEIKALILMSSLPESWDTV+A  SS 
Sbjct: 61  FFNLQMPENGSVSDHVNEFNIIVSQLNSVDINSEDEIKALILMSSLPESWDTVVATISSS 120

Query: 144 QGSEKLKFNEIQDIVISESIPKREIEDSSGRDPSVDQRGK 184
            GSE LKF+EI+D+V+SESI KRE+ DSSG   SVD+RG+
Sbjct: 121 HGSENLKFDEIRDVVLSESIRKREVGDSSGNALSVDRRGR 160

[Close]
BLAST of CmoCh04G021010 vs. TrEMBL
Match: A0A151S0E5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_030069 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 4.9e-48
Identity = 108/198 (54.55%), Postives = 143/198 (72.22%), Query Frame = 1 

Query: 1   MQIEDYLYQKNIHEPLLEVKLDTMTTEQWKLKDQQVLGLILVTLSRNVAFNIIKEKTTLG 60
           MQIEDYLYQK +H+PL   K + M  ++W L D+Q LG+I +TLSRNVAFNI KEKTT+G
Sbjct: 1   MQIEDYLYQKKLHQPLEGKKPEGMKDDEWVLLDRQALGVIRLTLSRNVAFNIAKEKTTMG 60

Query: 61  MLKALSNFYEKPSTINKVYLMQRLFNLQMSEGGSVANHINEFNMIVRKPSSVEINFEDEI 120
           ++ ALS+ YE PS  NKV+LM+RLFNLQM+EG SVA H+NE +++  + SSV I F+DE+
Sbjct: 61  LMTALSSMYENPSASNKVHLMRRLFNLQMTEGASVAQHLNELSIVTTQLSSVGIEFDDEV 120

Query: 121 KALILMSSLPESWDTVIAATSSFQGSEKLKFNEIQDIVISESIPKREIEDSS-------- 180
           +ALIL+SSLPESW+  + A SS  GS KLK ++++D+V+SE I +RE  +SS        
Sbjct: 121 RALILLSSLPESWNATVTAVSSSSGSNKLKSDDVRDLVLSEEIRRRESGESSTSSVLHTE 180

Query: 181 --GRDPSVDQRGKKFGKS 189
             GR P+   RG   GKS
Sbjct: 181 SRGRAPT---RGNGRGKS 195

[Close]
BLAST of CmoCh04G021010 vs. TrEMBL
Match: A0A151SEB7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_024959 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 8.3e-48
Identity = 108/198 (54.55%), Postives = 143/198 (72.22%), Query Frame = 1 

Query: 1   MQIEDYLYQKNIHEPLLEVKLDTMTTEQWKLKDQQVLGLILVTLSRNVAFNIIKEKTTLG 60
           MQIEDYLYQK +H+PL   K + M  ++W L D+Q LG+I +TLSRNVAFNI KEKTT+G
Sbjct: 1   MQIEDYLYQKKLHQPLEGKKPEGMKDDEWVLLDRQALGVIRLTLSRNVAFNIAKEKTTVG 60

Query: 61  MLKALSNFYEKPSTINKVYLMQRLFNLQMSEGGSVANHINEFNMIVRKPSSVEINFEDEI 120
           ++ ALS+ YEKPS  NKV+LM+RLFNL+M+EG SVA H+NE + +  + SSV I F+DE+
Sbjct: 61  LMTALSSMYEKPSASNKVHLMRRLFNLRMAEGASVAQHLNELSTVTTQLSSVGIEFDDEV 120

Query: 121 KALILMSSLPESWDTVIAATSSFQGSEKLKFNEIQDIVISESIPKREIEDSS-------- 180
           +ALIL+SSLPESW+  + A SS  GS KLK ++++D+V+SE I +RE  +SS        
Sbjct: 121 RALILLSSLPESWNATVTAVSSSSGSNKLKSDDVRDLVLSEEIRRRESGESSTSSVLHTE 180

Query: 181 --GRDPSVDQRGKKFGKS 189
             GR P+   RG   GKS
Sbjct: 181 SRGRAPT---RGNGRGKS 195

[Close]
BLAST of CmoCh04G021010 vs. TrEMBL
Match: A0A151RCJ0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_038330 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 98/172 (56.98%), Postives = 131/172 (76.16%), Query Frame = 1 

Query: 1   MQIEDYLYQKNIHEPLLEVKLDTMTTEQWKLKDQQVLGLILVTLSRNVAFNIIKEKTTLG 60
           MQIEDYLYQK +HEPL   K + M  ++W   D++ LG I +TLSRNVAFNI KEKTT  
Sbjct: 1   MQIEDYLYQKGLHEPLTGKKPEAMKEDEWSFLDRKALGAIRLTLSRNVAFNIAKEKTTAS 60

Query: 61  MLKALSNFYEKPSTINKVYLMQRLFNLQMSEGGSVANHINEFNMIVRKPSSVEINFEDEI 120
           ++ ALS+ YEKPS  NKV+L++RLFNL+M+EG S A HINE N I  + SSV INF++E+
Sbjct: 61  LMAALSSMYEKPSAANKVHLIRRLFNLRMTEGASTAQHINELNTITIQLSSVGINFDEEV 120

Query: 121 KALILMSSLPESWDTVIAATSSFQGSEKLKFNEIQDIVISESIPKREIEDSS 173
           +ALIL+SSLPESW+  + A SS  GS KLKF++++D+V+SE + +RE  +S+
Sbjct: 121 RALILLSSLPESWNATVTAVSSSSGSNKLKFDDVRDLVLSEEVRRRETGEST 172

[Close]
BLAST of CmoCh04G021010 vs. TrEMBL
Match: A0A151RCT9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_038328 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 98/172 (56.98%), Postives = 131/172 (76.16%), Query Frame = 1 

Query: 1   MQIEDYLYQKNIHEPLLEVKLDTMTTEQWKLKDQQVLGLILVTLSRNVAFNIIKEKTTLG 60
           MQIEDYLYQK +HEPL   K + M  ++W   D++ LG I +TLSRNVAFNI KEKTT  
Sbjct: 1   MQIEDYLYQKGLHEPLTGKKPEAMKEDEWSFLDRKALGAIRLTLSRNVAFNIAKEKTTAS 60

Query: 61  MLKALSNFYEKPSTINKVYLMQRLFNLQMSEGGSVANHINEFNMIVRKPSSVEINFEDEI 120
           ++ ALS+ YEKPS  NKV+L++RLFNL+M+EG S A HINE N I  + SSV INF++E+
Sbjct: 61  LMAALSSMYEKPSAANKVHLIRRLFNLRMTEGASTAQHINELNTITIQLSSVGINFDEEV 120

Query: 121 KALILMSSLPESWDTVIAATSSFQGSEKLKFNEIQDIVISESIPKREIEDSS 173
           +ALIL+SSLPESW+  + A SS  GS KLKF++++D+V+SE + +RE  +S+
Sbjct: 121 RALILLSSLPESWNATVTAVSSSSGSNKLKFDDVRDLVLSEEVRRRETGEST 172

[Close]
BLAST of CmoCh04G021010 vs. TAIR10
Match: AT3G29785.1 (AT3G29785.1 unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-14
Identity = 38/88 (43.18%), Postives = 63/88 (71.59%), Query Frame = 1 

Query: 1   MQIEDYLYQKNIHEPLLEVKLDTMTTEQWKLKDQQVLGLILVTLSRNVAFNIIKEKTTLG 60
           M+IEDYLY K +H+PL + K++TM+ + W +  +QVL +I +T+S+N+A N+ KEK+  G
Sbjct: 19  MKIEDYLYGKKLHQPLGK-KVETMSQDDWNILYRQVLDVIRLTISKNIAHNVAKEKSPDG 78

Query: 61  MLKALSNFYEKPSTINKVYLMQRLFNLQ 89
           ++K LS+ Y+KPST N V   +   +++
Sbjct: 79  LMKVLSDIYKKPSTNNTVISHEETISIE 105

[Close]
BLAST of CmoCh04G021010 vs. NCBI nr
Match: gi|1012336997|gb|KYP48283.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 199.9 bits (507), Expect = 7.0e-48
Identity = 108/198 (54.55%), Postives = 143/198 (72.22%), Query Frame = 1 

Query: 1   MQIEDYLYQKNIHEPLLEVKLDTMTTEQWKLKDQQVLGLILVTLSRNVAFNIIKEKTTLG 60
           MQIEDYLYQK +H+PL   K + M  ++W L D+Q LG+I +TLSRNVAFNI KEKTT+G
Sbjct: 1   MQIEDYLYQKKLHQPLEGKKPEGMKDDEWVLLDRQALGVIRLTLSRNVAFNIAKEKTTMG 60

Query: 61  MLKALSNFYEKPSTINKVYLMQRLFNLQMSEGGSVANHINEFNMIVRKPSSVEINFEDEI 120
           ++ ALS+ YE PS  NKV+LM+RLFNLQM+EG SVA H+NE +++  + SSV I F+DE+
Sbjct: 61  LMTALSSMYENPSASNKVHLMRRLFNLQMTEGASVAQHLNELSIVTTQLSSVGIEFDDEV 120

Query: 121 KALILMSSLPESWDTVIAATSSFQGSEKLKFNEIQDIVISESIPKREIEDSS-------- 180
           +ALIL+SSLPESW+  + A SS  GS KLK ++++D+V+SE I +RE  +SS        
Sbjct: 121 RALILLSSLPESWNATVTAVSSSSGSNKLKSDDVRDLVLSEEIRRRESGESSTSSVLHTE 180

Query: 181 --GRDPSVDQRGKKFGKS 189
             GR P+   RG   GKS
Sbjct: 181 SRGRAPT---RGNGRGKS 195

[Close]
BLAST of CmoCh04G021010 vs. NCBI nr
Match: gi|1012341939|gb|KYP53137.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 108/198 (54.55%), Postives = 143/198 (72.22%), Query Frame = 1 

Query: 1   MQIEDYLYQKNIHEPLLEVKLDTMTTEQWKLKDQQVLGLILVTLSRNVAFNIIKEKTTLG 60
           MQIEDYLYQK +H+PL   K + M  ++W L D+Q LG+I +TLSRNVAFNI KEKTT+G
Sbjct: 1   MQIEDYLYQKKLHQPLEGKKPEGMKDDEWVLLDRQALGVIRLTLSRNVAFNIAKEKTTVG 60

Query: 61  MLKALSNFYEKPSTINKVYLMQRLFNLQMSEGGSVANHINEFNMIVRKPSSVEINFEDEI 120
           ++ ALS+ YEKPS  NKV+LM+RLFNL+M+EG SVA H+NE + +  + SSV I F+DE+
Sbjct: 61  LMTALSSMYEKPSASNKVHLMRRLFNLRMAEGASVAQHLNELSTVTTQLSSVGIEFDDEV 120

Query: 121 KALILMSSLPESWDTVIAATSSFQGSEKLKFNEIQDIVISESIPKREIEDSS-------- 180
           +ALIL+SSLPESW+  + A SS  GS KLK ++++D+V+SE I +RE  +SS        
Sbjct: 121 RALILLSSLPESWNATVTAVSSSSGSNKLKSDDVRDLVLSEEIRRRESGESSTSSVLHTE 180

Query: 181 --GRDPSVDQRGKKFGKS 189
             GR P+   RG   GKS
Sbjct: 181 SRGRAPT---RGNGRGKS 195

[Close]
BLAST of CmoCh04G021010 vs. NCBI nr
Match: gi|1012328713|gb|KYP40338.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 198.4 bits (503), Expect = 2.0e-47
Identity = 98/172 (56.98%), Postives = 131/172 (76.16%), Query Frame = 1 

Query: 1   MQIEDYLYQKNIHEPLLEVKLDTMTTEQWKLKDQQVLGLILVTLSRNVAFNIIKEKTTLG 60
           MQIEDYLYQK +HEPL   K + M  ++W   D++ LG I +TLSRNVAFNI KEKTT  
Sbjct: 1   MQIEDYLYQKGLHEPLTGKKPEAMKEDEWSFLDRKALGAIRLTLSRNVAFNIAKEKTTAS 60

Query: 61  MLKALSNFYEKPSTINKVYLMQRLFNLQMSEGGSVANHINEFNMIVRKPSSVEINFEDEI 120
           ++ ALS+ YEKPS  NKV+L++RLFNL+M+EG S A HINE N I  + SSV INF++E+
Sbjct: 61  LMAALSSMYEKPSAANKVHLIRRLFNLRMTEGASTAQHINELNTITIQLSSVGINFDEEV 120

Query: 121 KALILMSSLPESWDTVIAATSSFQGSEKLKFNEIQDIVISESIPKREIEDSS 173
           +ALIL+SSLPESW+  + A SS  GS KLKF++++D+V+SE + +RE  +S+
Sbjct: 121 RALILLSSLPESWNATVTAVSSSSGSNKLKFDDVRDLVLSEEVRRRETGEST 172

[Close]
BLAST of CmoCh04G021010 vs. NCBI nr
Match: gi|1012328712|gb|KYP40337.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 198.4 bits (503), Expect = 2.0e-47
Identity = 98/172 (56.98%), Postives = 131/172 (76.16%), Query Frame = 1 

Query: 1   MQIEDYLYQKNIHEPLLEVKLDTMTTEQWKLKDQQVLGLILVTLSRNVAFNIIKEKTTLG 60
           MQIEDYLYQK +HEPL   K + M  ++W   D++ LG I +TLSRNVAFNI KEKTT  
Sbjct: 1   MQIEDYLYQKGLHEPLTGKKPEAMKEDEWSFLDRKALGAIRLTLSRNVAFNIAKEKTTAS 60

Query: 61  MLKALSNFYEKPSTINKVYLMQRLFNLQMSEGGSVANHINEFNMIVRKPSSVEINFEDEI 120
           ++ ALS+ YEKPS  NKV+L++RLFNL+M+EG S A HINE N I  + SSV INF++E+
Sbjct: 61  LMAALSSMYEKPSAANKVHLIRRLFNLRMTEGASTAQHINELNTITIQLSSVGINFDEEV 120

Query: 121 KALILMSSLPESWDTVIAATSSFQGSEKLKFNEIQDIVISESIPKREIEDSS 173
           +ALIL+SSLPESW+  + A SS  GS KLKF++++D+V+SE + +RE  +S+
Sbjct: 121 RALILLSSLPESWNATVTAVSSSSGSNKLKFDDVRDLVLSEEVRRRETGEST 172

[Close]
BLAST of CmoCh04G021010 vs. NCBI nr
Match: gi|1012357422|gb|KYP68607.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 197.2 bits (500), Expect = 4.5e-47
Identity = 99/191 (51.83%), Postives = 136/191 (71.20%), Query Frame = 1 

Query: 1   MQIEDYLYQKNIHEPLLEVKLDTMTTEQWKLKDQQVLGLILVTLSRNVAFNIIKEKTTLG 60
           MQIEDYLYQK +++PL+  K D M  E+W L D+Q LG+I +TL++NVAFNI+ EKTT  
Sbjct: 1   MQIEDYLYQKKLYQPLIGEKPDDMKQEEWNLLDRQALGVIRLTLAKNVAFNIVNEKTTAS 60

Query: 61  MLKALSNFYEKPSTINKVYLMQRLFNLQMSEGGSVANHINEFNMIVRKPSSVEINFEDEI 120
           ++K LS+ YEKPS  NKV++M+RLFNL+M EG  V NHIN+FN I+    SV+I FEDE+
Sbjct: 61  LMKTLSDMYEKPSAANKVHIMRRLFNLKMGEGNLVINHINDFNTILAMLESVQIKFEDEV 120

Query: 121 KALILMSSLPESWDTVIAATSSFQGSEKLKFNEIQDIVISESIPKREIEDSSGRDPSVDQ 180
           KALIL+SSLPESW   + A SS     KLK N+I+D+++SE + +R+ E+ S    S   
Sbjct: 121 KALILLSSLPESWAATVTAVSSSARDNKLKLNDIRDLILSEDVRRRDSEEPSSSTSSSAL 180

Query: 181 RGKKFGKSSWK 192
             +  G+++ K
Sbjct: 181 NTESRGRTTQK 191

The following BLAST results are available for this feature:
BLAST of CmoCh04G021010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC9.9e-1830.73Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of CmoCh04G021010 vs. TrEMBL
Match NameE-valueIdentityDescription
K4BR07_SOLLC3.5e-5470.63Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A151S0E5_CAJCA4.9e-4854.55Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151SEB7_CAJCA8.3e-4854.55Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151RCJ0_CAJCA1.4e-4756.98Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151RCT9_CAJCA1.4e-4756.98Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
BLAST of CmoCh04G021010 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G29785.11.1e-1443.18 unknown protein[more]
BLAST of CmoCh04G021010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012336997|gb|KYP48283.1|7.0e-4854.55Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012341939|gb|KYP53137.1|1.2e-4754.55Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012328713|gb|KYP40338.1|2.0e-4756.98Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012328712|gb|KYP40337.1|2.0e-4756.98Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012357422|gb|KYP68607.1|4.5e-4751.83Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G021010.1CmoCh04G021010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 1..184
score: 4.0
NoneNo IPR availablePANTHERPTHR34676:SF1SUBFAMILY NOT NAMEDcoord: 1..184
score: 4.0
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 29..165
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G021010Cucurbita maxima (Rimu)cmacmoB741
CmoCh04G021010Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G021010Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G021010Cucurbita pepo (Zucchini)cmocpeB685
CmoCh04G021010Bottle gourd (USVL1VR-Ls)cmolsiB618