CmoCh04G020970 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
LocationCmo_Chr04 : 13114417 .. 13115004 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCACGCTCAAATTCTTGTCAGCCCTCCAACGGAAGGTCAACCCGAAGGAGATAATAGAGAAAGGGCTCATATTTGTGGATGCGACAATAAACTCTCAACCGAGCAAGAGTACTTTGATAGACTCAGGAGCGACTCACAACTTCATCACCGATCAAGAAGCCCGAAGATTGGGACTCACCATAGGAAAAGACCCTGGAAAAATGAAAGCTGTCAACTTCGAGGCCTTGCCTATTGTGGGAGTTTCCAAAAGAGTCCCCTTCAAATTAGGGGCTTGGATAGGAGAGCTGGACCTTGTCATAGTTCGCATGGATGACTTTGACGTGGTACTTGGGAGGGAGTTCCTCCTAGAACATAAAGTTATCCCAATGCCACTGGTGAAATGCTTGGTGATCACCGACCGCAATCCCACAGTAATACCTGCAAGCATCAAGCAGCCAGGTAATCTTAGAATGATCTCGGCCATACGATTGAAAAGAGAACTCGCACGAGAGGAACCTACATTTATGGCTATACCACTGATGGAAGAAGTGACTACTGAGGAAACTTTCCCAGACGAAATCAAGGAGGTACCACCATCGCTTTGA

mRNA sequence

ATGGGCACGCTCAAATTCTTGTCAGCCCTCCAACGGAAGGTCAACCCGAAGGAGATAATAGAGAAAGGGCTCATATTTGTGGATGCGACAATAAACTCTCAACCGAGCAAGAGTACTTTGATAGACTCAGGAGCGACTCACAACTTCATCACCGATCAAGAAGCCCGAAGATTGGGACTCACCATAGGAAAAGACCCTGGAAAAATGAAAGCTGTCAACTTCGAGGCCTTGCCTATTGTGGGAGTTTCCAAAAGAGTCCCCTTCAAATTAGGGGCTTGGATAGGAGAGCTGGACCTTGTCATAGTTCGCATGGATGACTTTGACGTGGTACTTGGGAGGGAGTTCCTCCTAGAACATAAAGTTATCCCAATGCCACTGGTGAAATGCTTGGTGATCACCGACCGCAATCCCACAGTAATACCTGCAAGCATCAAGCAGCCAGGTAATCTTAGAATGATCTCGGCCATACGATTGAAAAGAGAACTCGCACGAGAGGAACCTACATTTATGGCTATACCACTGATGGAAGAAGTGACTACTGAGGAAACTTTCCCAGACGAAATCAAGGAGGTACCACCATCGCTTTGA

Coding sequence (CDS)

ATGGGCACGCTCAAATTCTTGTCAGCCCTCCAACGGAAGGTCAACCCGAAGGAGATAATAGAGAAAGGGCTCATATTTGTGGATGCGACAATAAACTCTCAACCGAGCAAGAGTACTTTGATAGACTCAGGAGCGACTCACAACTTCATCACCGATCAAGAAGCCCGAAGATTGGGACTCACCATAGGAAAAGACCCTGGAAAAATGAAAGCTGTCAACTTCGAGGCCTTGCCTATTGTGGGAGTTTCCAAAAGAGTCCCCTTCAAATTAGGGGCTTGGATAGGAGAGCTGGACCTTGTCATAGTTCGCATGGATGACTTTGACGTGGTACTTGGGAGGGAGTTCCTCCTAGAACATAAAGTTATCCCAATGCCACTGGTGAAATGCTTGGTGATCACCGACCGCAATCCCACAGTAATACCTGCAAGCATCAAGCAGCCAGGTAATCTTAGAATGATCTCGGCCATACGATTGAAAAGAGAACTCGCACGAGAGGAACCTACATTTATGGCTATACCACTGATGGAAGAAGTGACTACTGAGGAAACTTTCCCAGACGAAATCAAGGAGGTACCACCATCGCTTTGA
Homology
[Close]
BLAST of CmoCh04G020970 vs. TrEMBL
Match: A5B4X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020318 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-29
Identity = 77/208 (37.02%), Postives = 127/208 (61.06%), Query Frame = 1 

Query: 1   MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGL 60
           MG+L+ L+AL+ K  PK    KGL++V+A +N + +K+ L+D+GATHNF++  EARRL L
Sbjct: 328 MGSLQLLNALKAKPMPKMPQSKGLMYVEALVNGKATKA-LVDTGATHNFVSKDEARRLEL 387

Query: 61  TIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRMDDFDVVLGREFLLEHK 120
              K+ G +KAVN  A P  GV++ V   +G+W G +D  +  MDDF +VLG +FL +  
Sbjct: 388 QASKEGGWLKAVNSAAKPSHGVAREVTMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVX 447

Query: 121 VIPMPLVKCL-VITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAI------- 180
            +P+P ++ + ++ +  P ++P   +      M+SA+++K+ L REE T++A        
Sbjct: 448 AVPLPFLRSMAILEEEKPCMVPTVTEGTPKTPMLSAMQVKKGLKREEVTYLATLKEEKDD 507

Query: 181 ----PLMEEVTTEETFPDEIKEV-PPSL 196
               P+++E+   +   DE K+V PP L
Sbjct: 508 GSGEPMLKEI---KRVLDEFKDVMPPEL 531

[Close]
BLAST of CmoCh04G020970 vs. TrEMBL
Match: A5AQF1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014071 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28
Identity = 81/212 (38.21%), Postives = 127/212 (59.91%), Query Frame = 1 

Query: 1   MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGL 60
           +G+L+ L+AL+ K  PK    KGL++V+A +N + +K+ L+D+GATHNF+++ EARRL L
Sbjct: 111 VGSLQLLNALKAKPIPKTPQSKGLMYVEAIVNGKATKA-LVDTGATHNFVSEDEARRLEL 170

Query: 61  TIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRMDDFDVVLGREFLLEHK 120
              K+ G +KAVN  A P  GV++ V   +G+W G +D  +  MDDF +VLG +FL + K
Sbjct: 171 QASKEGGWLKAVNSTAKPSHGVARGVTMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVK 230

Query: 121 VIPMPLVKCLVITDRN-----PTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAI--- 180
            +P+P ++ +   +       PTV   ++K P    M+SA+++K  L REE T++A    
Sbjct: 231 AVPLPFLRSMAFLEEEKSCMVPTVTEGTLKTP----MLSAMQVKNGLKREEVTYLATLKE 290

Query: 181 --------PLMEEVTTEETFPDEIKEV-PPSL 196
                   P+ +E+   E   DE K+V PP L
Sbjct: 291 EKDEGSGEPMPKEI---EGVLDEFKDVMPPEL 314

[Close]
BLAST of CmoCh04G020970 vs. TrEMBL
Match: A5BX03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.5e-28
Identity = 76/194 (39.18%), Postives = 119/194 (61.34%), Query Frame = 1 

Query: 1   MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGL 60
           MG+L  L AL+ K  PK    K L++V+  +N + +K+ L+D+GATHNF+++ EARRL L
Sbjct: 407 MGSLXLLXALKAKXMPKTPQSKXLMYVETLVNGKATKA-LVDTGATHNFVSEDEARRLEL 466

Query: 61  TIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRMDDFDVVLGREFLLEHK 120
              K+ G +KAVN  A P  GV++ V   +G W G +D  +  MDDF +VLG +FL + K
Sbjct: 467 QASKEGGWLKAVNSAAKPSHGVARGVTMHIGLWEGRVDFTVAPMDDFKMVLGMDFLQKVK 526

Query: 121 VIPMPLVKCL-VITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVT 180
            +P+P ++ + ++ +  P ++P   +      M+SA+++K+ L REE T++A  L EE  
Sbjct: 527 AVPLPFLRSMAILEEEKPCMVPTVTEGTPKTPMLSAMQVKKGLKREEVTYLA-TLKEEKD 586

Query: 181 --TEETFPDEIKEV 192
             + E  P EIK V
Sbjct: 587 DGSGEPMPKEIKGV 598

[Close]
BLAST of CmoCh04G020970 vs. TrEMBL
Match: A5B1A3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028082 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-27
Identity = 71/176 (40.34%), Postives = 113/176 (64.20%), Query Frame = 1 

Query: 1   MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGL 60
           MG+L+ L+AL+ K  PK    KGL++V+A +N + +K+ L+D+GATHNF+++++ARRL L
Sbjct: 385 MGSLQLLNALKAKPMPKTPQSKGLMYVEALVNGKVTKA-LVDTGATHNFVSEEKARRLEL 444

Query: 61  TIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRMDDFDVVLGREFLLEHK 120
              K+ G +KAVN  A P   V+  V   +G+W G +D  +  MDDF +VLG +FL + K
Sbjct: 445 QASKEGGWLKAVNSAAKPSHEVACGVTMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVK 504

Query: 121 VIPMPLVKCLVITDRN-----PTVIPASIKQPGNLRMISAIRLKRELAREEPTFMA 172
            +P+P ++ + I +       PTV    +K P    M+SA+++K+ L REE T++A
Sbjct: 505 AVPLPFLRSMAILEEEKPCMVPTVTEGMLKTP----MLSAMQVKKGLKREEVTYLA 555

[Close]
BLAST of CmoCh04G020970 vs. TrEMBL
Match: A5AXU2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031912 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-27
Identity = 75/195 (38.46%), Postives = 121/195 (62.05%), Query Frame = 1 

Query: 1   MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGL 60
           +G+L+ L+AL+ K  PK    KGLI+V+A +N + +K+ L+D+GAT+NF+++ EA+RL L
Sbjct: 190 VGSLQLLNALKVKSMPKTPQSKGLIYVEALVNGKATKA-LMDTGATYNFVSEDEAKRLEL 249

Query: 61  TIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRMDDFDVVLGREFLLEHK 120
              K+   +KAVN  A P  GV+++V   +G+W G +D  +  MDDF +VLG +FL + K
Sbjct: 250 QASKEGAWLKAVNSAAKPSHGVARKVTMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVK 309

Query: 121 VIPMPLVKCLVITDRNP--TVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEV 180
            +P+P +  + I +      V+P   +      M+SA+++K+ L R+E T++A  L EE 
Sbjct: 310 AVPLPFLPSMAILEEEKLCMVVPTVTESTPKTSMLSAMQVKKRLKRKEVTYLA-TLKEER 369

Query: 181 T--TEETFPDEIKEV 192
              + E  P EIK V
Sbjct: 370 DDGSREPMPKEIKGV 382

[Close]
BLAST of CmoCh04G020970 vs. NCBI nr
Match: gi|1009161831|ref|XP_015899105.1| (PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba])

HSP 1 Score: 179.9 bits (455), Expect = 4.4e-42
Identity = 88/186 (47.31%), Postives = 132/186 (70.97%), Query Frame = 1 

Query: 1   MGTLKFLSALQRKV-NPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLG 60
           +G L+FL+AL  +V   ++  EKGL+FVDATIN + +KS ++D+GATHNF ++ EARRLG
Sbjct: 232 VGALRFLNALNGQVVQARKTNEKGLMFVDATINGKAAKSVMVDTGATHNFCSESEARRLG 291

Query: 61  LTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRMDDFDVVLGREFLLEH 120
           L + KD G+MKAVN +ALP VG++K+VP KLG W   +DL++V MDDFDV+LG +FL++ 
Sbjct: 292 LRLQKDAGQMKAVNSKALPTVGLAKQVPLKLGTWEDRVDLIVVPMDDFDVILGMDFLVKK 351

Query: 121 KVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVT 180
           K IP+P    L++      V+P   KQ  N +++SA + K+ + R+EP+++A+ +  E  
Sbjct: 352 KAIPIPAANSLLMMGEQTGVVPVQRKQLNNPKLLSAFQFKKGVRRKEPSYIALVVAREGE 411

Query: 181 TEETFP 186
            +ET P
Sbjct: 412 DDETTP 417

[Close]
BLAST of CmoCh04G020970 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 177.9 bits (450), Expect = 1.7e-41
Identity = 88/186 (47.31%), Postives = 132/186 (70.97%), Query Frame = 1 

Query: 1   MGTLKFLSALQRKV-NPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLG 60
           +G L+FL+AL  +V   ++  EKGL+FVDA IN + +KS ++D+GATHNF ++ EARRLG
Sbjct: 590 VGALRFLNALNGQVVQARKTNEKGLMFVDAAINGKAAKSVMVDTGATHNFCSEIEARRLG 649

Query: 61  LTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRMDDFDVVLGREFLLEH 120
           L + KD G+MKAVN +ALP VG++K+VP KLG W   +DL++V MDDFDV+LG +FL++ 
Sbjct: 650 LRLQKDAGQMKAVNSKALPTVGLAKQVPLKLGTWEDRVDLIVVPMDDFDVILGMDFLVKK 709

Query: 121 KVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVT 180
           K IP+P    L++      VIP   KQ  N +++SA++ K+ + R+EP+++A+ +  E  
Sbjct: 710 KAIPIPAANSLLMMGEQTGVIPVQRKQLNNPKLLSALQFKKGVRRKEPSYIALVVAREGE 769

Query: 181 TEETFP 186
            +ET P
Sbjct: 770 DDETTP 775

[Close]
BLAST of CmoCh04G020970 vs. NCBI nr
Match: gi|1009181571|ref|XP_015872243.1| (PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba])

HSP 1 Score: 177.2 bits (448), Expect = 2.8e-41
Identity = 87/186 (46.77%), Postives = 131/186 (70.43%), Query Frame = 1 

Query: 1   MGTLKFLSALQRKV-NPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLG 60
           +G L+FL+AL  +V   ++  EKGL+FVDA IN + +KS ++D+GATHNF ++ EARRLG
Sbjct: 303 VGALRFLNALNGQVVQARKTNEKGLMFVDAAINGKAAKSVMVDTGATHNFCSEIEARRLG 362

Query: 61  LTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRMDDFDVVLGREFLLEH 120
           L + KD G+MKAVN +ALP VG++K+VP KLG W   +DL++V MDDFDV+LG +FL++ 
Sbjct: 363 LRLQKDAGQMKAVNSKALPTVGLAKQVPLKLGTWEDRVDLIVVPMDDFDVILGMDFLVKK 422

Query: 121 KVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVT 180
           K IP+P    L++      V+P   KQ  N +++SA++ K+ + R EP+++A+ +  E  
Sbjct: 423 KAIPIPAANSLLMMGEQTGVVPVQRKQLNNPKLLSALQFKKGVRRNEPSYIALVVAREGE 482

Query: 181 TEETFP 186
            +ET P
Sbjct: 483 DDETTP 488

[Close]
BLAST of CmoCh04G020970 vs. NCBI nr
Match: gi|1009180560|ref|XP_015871689.1| (PREDICTED: uncharacterized protein LOC107408784 [Ziziphus jujuba])

HSP 1 Score: 174.9 bits (442), Expect = 1.4e-40
Identity = 85/186 (45.70%), Postives = 131/186 (70.43%), Query Frame = 1 

Query: 1   MGTLKFLSALQRKV-NPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLG 60
           +G L+FL+AL  +V   ++  EKGL+FVDA IN + +KS ++D+GATHNF ++ EARRLG
Sbjct: 256 VGALRFLNALNGQVVQARKTNEKGLMFVDAAINGKAAKSVMVDTGATHNFCSETEARRLG 315

Query: 61  LTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRMDDFDVVLGREFLLEH 120
           L + KD G+MKA+N +ALP VG++K+VP KLG W   +DL++V MDDFDV+LG +FL++ 
Sbjct: 316 LCLQKDAGQMKAINSKALPTVGLAKQVPLKLGTWEDRVDLIVVPMDDFDVILGMDFLVKK 375

Query: 121 KVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVT 180
           K IP+P    L++      V+P   KQ  N +++SA++ K+ +  +EP+++A+ +  E  
Sbjct: 376 KAIPIPAANSLLMMGEQTGVVPVQRKQLNNPKLLSALQFKKGVRCKEPSYIALVVAREGE 435

Query: 181 TEETFP 186
            +ET P
Sbjct: 436 DDETTP 441

[Close]
BLAST of CmoCh04G020970 vs. NCBI nr
Match: gi|1009165187|ref|XP_015900908.1| (PREDICTED: uncharacterized protein LOC107434012 [Ziziphus jujuba])

HSP 1 Score: 167.9 bits (424), Expect = 1.7e-38
Identity = 82/186 (44.09%), Postives = 128/186 (68.82%), Query Frame = 1 

Query: 1   MGTLKFLSALQRKV-NPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLG 60
           +G L+FL+AL  +V   ++  EKGL+ +DA IN + +KS ++D+GATHNF ++ E  RLG
Sbjct: 408 VGALRFLNALNGQVVQARKTNEKGLMLMDAAINGKAAKSVMVDTGATHNFCSEIEIERLG 467

Query: 61  LTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRMDDFDVVLGREFLLEH 120
           L + KD G+MKAVN +ALP VG++K+VP KLG W   +DL++V MDDFDV+LG +FL++ 
Sbjct: 468 LRLQKDAGQMKAVNSKALPTVGLAKQVPLKLGTWEDRVDLIVVPMDDFDVILGMDFLVKK 527

Query: 121 KVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVT 180
           K IP+P    L++       +P   KQ  N +++SA++ K+ + R+EP+++A+ +  E  
Sbjct: 528 KAIPIPAANSLLMMGEQTGEVPVQRKQLNNPKLLSALQFKKGVRRKEPSYIALVVAREGE 587

Query: 181 TEETFP 186
            +ET P
Sbjct: 588 DDETTP 593

The following BLAST results are available for this feature:
BLAST of CmoCh04G020970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G020970 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B4X8_VITVI5.0e-2937.02Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020318 PE=4 SV=1[more]
A5AQF1_VITVI1.1e-2838.21Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014071 PE=4 SV=1[more]
A5BX03_VITVI2.5e-2839.18Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1[more]
A5B1A3_VITVI1.2e-2740.34Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028082 PE=4 SV=1[more]
A5AXU2_VITVI2.1e-2738.46Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031912 PE=4 SV=1[more]
BLAST of CmoCh04G020970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G020970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1009161831|ref|XP_015899105.1|4.4e-4247.31PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba][more]
gi|1009175511|ref|XP_015868924.1|1.7e-4147.31PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba][more]
gi|1009181571|ref|XP_015872243.1|2.8e-4146.77PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba][more]
gi|1009180560|ref|XP_015871689.1|1.4e-4045.70PREDICTED: uncharacterized protein LOC107408784 [Ziziphus jujuba][more]
gi|1009165187|ref|XP_015900908.1|1.7e-3844.09PREDICTED: uncharacterized protein LOC107434012 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020970.1CmoCh04G020970.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domainunknownSSF50630Acid proteasescoord: 20..121
score: 1.1
NoneNo IPR availablePFAMPF13975gag-asp_proteascoord: 27..116
score: 4.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020970Cucurbita maxima (Rimu)cmacmoB741
CmoCh04G020970Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020970Cucurbita pepo (Zucchini)cmocpeB680
CmoCh04G020970Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G020970Cucurbita pepo (Zucchini)cmocpeB685