CmoCh04G020780 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020780
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCmo_Chr04 : 11892204 .. 11893663 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGATTGAAGATTATCTGTACCAGAAAGATCTTCACGAACCTCTATTGGGGGTGAAGCCGGATACCATGACCACGGAACAGTGGAAGCTTAAGGATCGAAAAGCCTTAGGGATGATCCAGTTGTCGCTATCCAGAAACGTGGCGTTCAACATTATCAAGGAGAAGACAACGTCAGATCTAATGAAGGCGCTGTCGAATATGTACGAAAAACCGTCGGCTATGAACAAGTGTATTTGATGCGTAGATTGTTCAATCTACAGATGTCTGAAGGTGGACGTGTTGTTGATCATATAAATGAATTCAATATGATCATAAGTCAATTGAGTTCGGTGGAAATTAATTTCGAAGATGAAATTAAAGCGTTGATTTTGATGTCATCCTTCCCCGAGTCATGGGATACTATTGTTGTCGCAATCAGCAGTTCCCGAGGATCTGATAAACTGAAGTTTGGTGAAATTCGAGATGTAGTTCTCAGCGAAAGTATTCACAAACGAGAAACTGGAGATTCATCAGGCAATGCTCTCAGTGTTGATCGAAGGGGAAGAAGTAAGCCGAAGGGCCCAAACAAAGGGCGATCAAAATCAAAGAGCCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGTGGAGAAAAAGGTCACTTTCGGACAGGTTGTACAAGACCAAAGAGAAAGCAGAATCACAAATCTGGAGATGATGATGATTCTATAAATTCAGCAGAAGACATTGGGGATGCTCTAATCCTCAGCGTGGACAGTTCGATTGAATCCTGGATTTTGGATTCAGGTGCATCTTTTCATTCGTCTCCAAATAAAGAGTTGTTCCAAAATTTCAAGTCTGGAAATTTCGAGAAGGTGTATCTTGCCGACAACAAAGATTTGGAGATTAAAGGAAAAGGAGATGTCTGCATAAAAACTCCGGCAGGAAATCGGTGGACATTAAAGGATATCAGATATATTCCTGCTCTCAAAAGGAACCTGATCTCTATTGGTCAATTGGATAGCACTAGTTATGCAACAAAGTTAGGGAAGGGTTCGTGGAAGATTATGAAGGGTGCTACGGTGGTAGCACGTGGCTCAAAATCTGGAACCCTAGACACCACTACAGGGTGTATGAACATAGCTGCTGTTGCTGAGAGTGCTTCAAATTCAAGTCTACGGCACAATAGACTTGAACCTATGAGCGCGAAAGGAATGAAGAGGCTGGCTGCGAAAGGAGTTTTAGAAGGTCTGAAATCTGTTGATGTGGGTCGTTGTGAGAACTACGTTATGAGCAAGCAGAAACGAGTTAGCTTCACAAGGACCGCCAGAGAAGTGAAGAAAGTGCGGTTGGAAATGGAACCAGATGTGGAGCAAGGTTCCAAGACCACGAAACAAGTGGGAGTTGAACAAGTGGGAGTTGAACTTGAAGATTCTACCCCTACTCCTTCTCTCTCACAGGCCCGATAA

mRNA sequence

ATGCAGATTGAAGATTATCTGTACCAGAAAGATCTTCACGAACCTCTATTGGGGGTGAAGCCGGATACCATGACCACGGAACAGTGGAAGCTTAAGGATCGAAAAGCCTTAGGGATGATCCAGTTGTCGCTATCCAGAAACGTGGCGTTCAACATTATCAAGGAGAAGACAACGTCAGATCTAATGAAGGCGCTGTCGAATATTTCCCGAGGATCTGATAAACTGAAGTTTGGTGAAATTCGAGATGTAGTTCTCAGCGAAAGTATTCACAAACGAGAAACTGGAGATTCATCAGGCAATGCTCTCAGTGTTGATCGAAGGGGAAGAAGTAAGCCGAAGGGCCCAAACAAAGGGCGATCAAAATCAAAGAGCCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGTGGAGAAAAAGGTCACTTTCGGACAGGTTGTACAAGACCAAAGAGAAAGCAGAATCACAAATCTGGAGATGATGATGATTCTATAAATTCAGCAGAAGACATTGGGGATGCTCTAATCCTCAGCGTGGACAGTTCGATTGAATCCTGGATTTTGGATTCAGGTGCATCTTTTCATTCGTCTCCAAATAAAGAGTTGTTCCAAAATTTCAAGTCTGGAAATTTCGAGAAGGTGTATCTTGCCGACAACAAAGATTTGGAGATTAAAGGAAAAGGAGATGTCTGCATAAAAACTCCGGCAGGAAATCGGTGGACATTAAAGGATATCAGATATATTCCTGCTCTCAAAAGGAACCTGATCTCTATTGGTCAATTGGATAGCACTAGTTATGCAACAAAGTTAGGGAAGGGTTCGTGGAAGATTATGAAGGGTGCTACGGTGGTAGCACGTGGCTCAAAATCTGGAACCCTAGACACCACTACAGGGTGTATGAACATAGCTGCTGTTGCTGAGAGTGCTTCAAATTCAAGTCTACGGCACAATAGACTTGAACCTATGAGCGCGAAAGGAATGAAGAGGCTGGCTGCGAAAGGAGTTTTAGAAGGTCTGAAATCTGTTGATGTGGGTCGTTGTGAGAACTACGTTATGAGCAAGCAGAAACGAGTTAGCTTCACAAGGACCGCCAGAGAAGTGAAGAAAGTGCGGTTGGAAATGGAACCAGATGTGGAGCAAGGTTCCAAGACCACGAAACAAGTGGGAGTTGAACAAGTGGGAGTTGAACTTGAAGATTCTACCCCTACTCCTTCTCTCTCACAGGCCCGATAA

Coding sequence (CDS)

ATGCAGATTGAAGATTATCTGTACCAGAAAGATCTTCACGAACCTCTATTGGGGGTGAAGCCGGATACCATGACCACGGAACAGTGGAAGCTTAAGGATCGAAAAGCCTTAGGGATGATCCAGTTGTCGCTATCCAGAAACGTGGCGTTCAACATTATCAAGGAGAAGACAACGTCAGATCTAATGAAGGCGCTGTCGAATATTTCCCGAGGATCTGATAAACTGAAGTTTGGTGAAATTCGAGATGTAGTTCTCAGCGAAAGTATTCACAAACGAGAAACTGGAGATTCATCAGGCAATGCTCTCAGTGTTGATCGAAGGGGAAGAAGTAAGCCGAAGGGCCCAAACAAAGGGCGATCAAAATCAAAGAGCCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGTGGAGAAAAAGGTCACTTTCGGACAGGTTGTACAAGACCAAAGAGAAAGCAGAATCACAAATCTGGAGATGATGATGATTCTATAAATTCAGCAGAAGACATTGGGGATGCTCTAATCCTCAGCGTGGACAGTTCGATTGAATCCTGGATTTTGGATTCAGGTGCATCTTTTCATTCGTCTCCAAATAAAGAGTTGTTCCAAAATTTCAAGTCTGGAAATTTCGAGAAGGTGTATCTTGCCGACAACAAAGATTTGGAGATTAAAGGAAAAGGAGATGTCTGCATAAAAACTCCGGCAGGAAATCGGTGGACATTAAAGGATATCAGATATATTCCTGCTCTCAAAAGGAACCTGATCTCTATTGGTCAATTGGATAGCACTAGTTATGCAACAAAGTTAGGGAAGGGTTCGTGGAAGATTATGAAGGGTGCTACGGTGGTAGCACGTGGCTCAAAATCTGGAACCCTAGACACCACTACAGGGTGTATGAACATAGCTGCTGTTGCTGAGAGTGCTTCAAATTCAAGTCTACGGCACAATAGACTTGAACCTATGAGCGCGAAAGGAATGAAGAGGCTGGCTGCGAAAGGAGTTTTAGAAGGTCTGAAATCTGTTGATGTGGGTCGTTGTGAGAACTACGTTATGAGCAAGCAGAAACGAGTTAGCTTCACAAGGACCGCCAGAGAAGTGAAGAAAGTGCGGTTGGAAATGGAACCAGATGTGGAGCAAGGTTCCAAGACCACGAAACAAGTGGGAGTTGAACAAGTGGGAGTTGAACTTGAAGATTCTACCCCTACTCCTTCTCTCTCACAGGCCCGATAA
Homology
[Close]
BLAST of CmoCh04G020780 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-33
Identity = 106/338 (31.36%), Postives = 172/338 (50.89%), Query Frame = 1 

Query: 47  NVAFNIIKEKTTSDLMKALSNISRGSDKLKFGEIRDVVLSESIHKRETGDSSGNALSVDR 106
           N+A  I+  KTT +L    S +               +L+E + K+   ++ G AL  + 
Sbjct: 158 NLATTILHGKTTIELKDVTSAL---------------LLNEKMRKKP--ENQGQALITEG 217

Query: 107 RGRSKPKGPNK-GRSKSKSREKSPNRPNV-TCWNCGEKGHFRTGCTRPKRKQNHKSGD-D 166
           RGRS  +  N  GRS ++ + K+ ++  V  C+NC + GHF+  C  P++ +   SG  +
Sbjct: 218 RGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKN 277

Query: 167 DDSINSAEDIGDALILSVDSSIE---------SWILDSGASFHSSPNKELFQNFKSGNFE 226
           DD+  +     D ++L ++   E          W++D+ AS H++P ++LF  + +G+F 
Sbjct: 278 DDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFG 337

Query: 227 KVYLADNKDLEIKGKGDVCIKTPAGNRWTLKDIRYIPALKRNLISIGQLDSTSYATKLGK 286
            V + +    +I G GD+CIKT  G    LKD+R++P L+ NLIS   LD   Y +    
Sbjct: 338 TVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFAN 397

Query: 287 GSWKIMKGATVVARGSKSGTLDTTTG--CMNIAAVAESASNSSLRHNRLEPMSAKGMKRL 346
             W++ KG+ V+A+G   GTL  T    C      A+   +  L H R+  MS KG++ L
Sbjct: 398 QKWRLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQIL 457

Query: 347 AAKGVLEGLKSVDVGRCENYVMSKQKRVSFTRTAREVK 371
           A K ++   K   V  C+  +  KQ RVSF +T+ E K
Sbjct: 458 AKKSLISYAKGTTVKPCDYCLFGKQHRVSF-QTSSERK 477

[Close]
BLAST of CmoCh04G020780 vs. TrEMBL
Match: K4BJ49_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 7.7e-96
Identity = 195/307 (63.52%), Postives = 221/307 (71.99%), Query Frame = 1 

Query: 1   MQIEDYLYQKDLHEPLLGVKPDTMTTEQWKLKDRKALGMIQLSLSRNVAFNIIKEKTTSD 60
           MQIEDYLYQKDLHEPL GVKP++MT E+WKLKDR+ALG+I+L+LSRNVAFNI+KEKTTS 
Sbjct: 1   MQIEDYLYQKDLHEPLTGVKPESMTEEKWKLKDRQALGLIRLTLSRNVAFNIVKEKTTSG 60

Query: 61  LMKALSNI------------------------------SRGSDKLKFGEIRDVVLSESIH 120
           L+KALSN+                              SRGS+KLKF EI DVVLSESIH
Sbjct: 61  LLKALSNMYEKPSAMNKVFILMASLPESWDTVVAEISSSRGSEKLKFDEICDVVLSESIH 120

Query: 121 KRETGDSSGNALSVDRRGRSKPKGPNK-GRSKSKSREKSPNRPNVTCWNCGEKGHFRTGC 180
           KRE GDSSG+ALSVDRRG SK KG N+  RSKSK+R KS NR NVTCWNCGEKGHFRT C
Sbjct: 121 KREVGDSSGSALSVDRRGISKTKGQNQHSRSKSKNRGKSLNRSNVTCWNCGEKGHFRTNC 180

Query: 181 TRPKRKQNHKSGDDDDSINSAEDIGDALILSVDSSIESWILDSGASFHSSPNKELFQNFK 240
           T P                                +ESWILDSGASFHSSP+KELFQNFK
Sbjct: 181 TNP--------------------------------VESWILDSGASFHSSPSKELFQNFK 240

Query: 241 SGNFEKVYLADNKDLEIKGKGDVCIKTPAGNRWTLKDIRYIPALKRNLISIGQLDSTSYA 277
           SG+F KVYLADNK LEI+GKGDVCIKT +GN+WTL+D+RYIP +K+NLIS+GQLDS  YA
Sbjct: 241 SGDFGKVYLADNKTLEIEGKGDVCIKTTSGNQWTLEDVRYIPRIKKNLISVGQLDSKGYA 275

[Close]
BLAST of CmoCh04G020780 vs. TrEMBL
Match: A5BPB3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034935 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 4.4e-91
Identity = 191/412 (46.36%), Postives = 274/412 (66.50%), Query Frame = 1 

Query: 1   MQIEDYLYQKDLHEPLLGVKPDTMTTEQWKLKDRKALGMIQLSLSRNVAFNIIKEKTTSD 60
           MQIEDYLY + LH PLLG KP++M  E+W L DR+ LG+I+L+LSR+VA N++KEKTT+D
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83

Query: 61  LM-----------------------------KALSNISRGSDKLKFGEIRDVVLSESIHK 120
           LM                              A+SN S G +KLK+ +IRD++L+E I +
Sbjct: 84  LMKALSEIDFDDEIRALIVLASLPNSWEAMRMAVSN-STGKEKLKYNDIRDLILAEEIRR 143

Query: 121 RETGDSSGN--ALSVDRRGRSKPKGPNKGRSKSKS----REKSPNRPNVTCWNCGEKGHF 180
           R+ G++SG+  AL+++ RGR   +  N+GRS S++    R KS +   V CWNCG+ GHF
Sbjct: 144 RDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHF 203

Query: 181 RTGCTRPKRKQNHKSGDDDDSINS-AEDIGDALILSVDSSIESWILDSGASFHSSPNKEL 240
           +  C  PK+K      ++DDS N+  E++ DAL+L+VDS ++ W+LDSGASFH++P++E+
Sbjct: 204 KRQCKSPKKK------NEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHREI 263

Query: 241 FQNFKSGNFEKVYLADNKDLEIKGKGDVCIKTPAGNRWTLKDIRYIPALKRNLISIGQLD 300
            QN+ +G+F KVYLAD   L++ G GDV I  P G+ W L+ +R+IP L+RNLIS+GQLD
Sbjct: 264 IQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLD 323

Query: 301 STSYATKLGKGSWKIMKGATVVARGSKSGTLDTTTGCMNIAAVAESASNSSLRHNRLEPM 360
              +A     G+WK+ KGA V+ARG K+GTL  T+   +  AVA++++++SL H RL  M
Sbjct: 324 DEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM 383

Query: 361 SAKGMKRLAAKGVLEGLKSVDVGRCENYVMSKQKRVSFTRTAREVKKVRLEM 377
           S KGMK L +KG L  LKS+D   CE+ ++ KQK+VSF +T R  K  +LE+
Sbjct: 384 SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLEL 428

[Close]
BLAST of CmoCh04G020780 vs. TrEMBL
Match: A5B0E4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022906 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 2.7e-80
Identity = 171/384 (44.53%), Postives = 247/384 (64.32%), Query Frame = 1 

Query: 1   MQIEDYLYQKDLHEPLLGVKPDTMTTEQWKLKDRKALGMIQLSLSRNVAFNIIKEKTTSD 60
           MQIEDYLY++ LH PLLG KP++M  E+W L D++ L +I+L+LSR+VA N++KEKTT+D
Sbjct: 24  MQIEDYLYRRKLHLPLLGTKPESMKAEEWALLDKQVLEVIRLTLSRSVAHNVVKEKTTTD 83

Query: 61  LMKALSNISR-------GSDKLKFGEIRDVVLSESIHKRETGDSSGNALSVDRRGRSKPK 120
           LMKALS   R       G +KLK+ +IRD++L E I +R+ G++S +  +++ + R K  
Sbjct: 84  LMKALSEAMRMVVSNSTGKEKLKYNDIRDLILVEEIRRRDAGETSRSGSALNLKTRGK-- 143

Query: 121 GPNKGRSKSKSREKSPNRPNVTCWNCGEKGHFRTGCTRPKRKQNHKSGDDDDSINS-AED 180
                                        GHF+  C  PK+K      ++DDS N+  E+
Sbjct: 144 -----------------------------GHFKRQCKNPKKK------NEDDSANAVTEE 203

Query: 181 IGDALILSVDSSIESWILDSGASFHSSPNKELFQNFKSGNFEKVYLADNKDLEIKGKGDV 240
           + DAL+L+VDS ++ W+LDSG SFH+ P++E+ QN+ +G+F KVYLAD   L++ G GDV
Sbjct: 204 VQDALLLTVDSPLDDWVLDSGTSFHTIPHREIIQNYIAGDFGKVYLADGSALDVVGLGDV 263

Query: 241 CIKTPAGNRWTLKDIRYIPALKRNLISIGQLDSTSYATKLGKGSWKIMKGATVVARGSKS 300
            I  P G+ W L+ +R+IP L+RNLISIGQLD   +A     G+WK+ KGA V+ARG K+
Sbjct: 264 RISLPNGSVWLLEKVRHIPDLRRNLISIGQLDDEGHAILFVGGTWKVTKGARVLARGKKT 323

Query: 301 GTLDTTTGCMNIAAVAESASNSSLRHNRLEPMSAKGMKRLAAKGVLEGLKSVDVGRCENY 360
           GTL  T+   +  AVA+++ ++S+ H RL  MS KGMK L +KG L  LKS+D   CE+ 
Sbjct: 324 GTLYMTSCPRDTIAVADASIDTSIWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESC 370

Query: 361 VMSKQKRVSFTRTAREVKKVRLEM 377
           ++ KQK+VSF +T R  K  +LE+
Sbjct: 384 ILGKQKKVSFLKTGRTPKAEKLEL 370

[Close]
BLAST of CmoCh04G020780 vs. TrEMBL
Match: A5CBM1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001479 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 7.3e-78
Identity = 177/429 (41.26%), Postives = 263/429 (61.31%), Query Frame = 1 

Query: 1   MQIEDYLYQKDLHEPLLGVKPDTMTTEQW-------------------KLKDRKALGMIQ 60
           MQIEDYLY + LH PLLG KP++M  E+W                   K+   K L  ++
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQALSGMYEKPSANNKVHLMKKLFNLK 83

Query: 61  LSLSRNVA-----FNIIKEKTTS----------------------DLMKALSNISRGSDK 120
           ++ + +VA     FN I  + +S                      + M+   + S G +K
Sbjct: 84  MAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEK 143

Query: 121 LKFGEIRDVVLSESIHKRETGDSSGN--ALSVDRRGRSKPKGPNKGRSKSKS----REKS 180
           LK+ +IRD++L+E I +R+ G++SG+  AL+++ RGR   +  N+GRS S++    R KS
Sbjct: 144 LKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKS 203

Query: 181 PNRPNVTCWNCGEKGHFRTGCTRPKRKQNHKSGDDDDSINS-AEDIGDALILSVDSSIES 240
            +   V CWNCG+ GHF+  C  PK+K      ++DDS N+  E++ DAL+L+VDS ++ 
Sbjct: 204 RSGQQVQCWNCGKTGHFKRQCKSPKKK------NEDDSANAVTEEVQDALLLAVDSPLDD 263

Query: 241 WILDSGASFHSSPNKELFQNFKSGNFEKVYLADNKDLEIKGKGDVCIKTPAGNRWTLKDI 300
           W+LDSGASFH++P++E+ QN+ +G+F KVYLAD   L++ G GDV I  P G+ W L+ +
Sbjct: 264 WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 323

Query: 301 RYIPALKRNLISIGQLDSTSYATKLGKGSWKIMKGATVVARGSKSGTLDTTTGCMNIAAV 360
           R+IP L+RNLIS+GQLD   +A     G+WK+ KGA V+ARG K+GTL  T+   +  AV
Sbjct: 324 RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAV 383

Query: 361 AESASNSSLRHNRLEPMSAKGMKRLAAKGVLEGLKSVDVGRCENYVMSKQKRVSFTRTAR 377
           A++++++SL H RL  MS KGMK L +KG L  LKS+D   CE+ ++ KQK+VSF +T R
Sbjct: 384 ADASTDTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGR 443

[Close]
BLAST of CmoCh04G020780 vs. TrEMBL
Match: A5BHR8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015274 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 9.5e-78
Identity = 176/410 (42.93%), Postives = 249/410 (60.73%), Query Frame = 1 

Query: 1   MQIEDYLYQKDLHEPLLGVKPDTMTTEQWKLKDRKALGMIQLSLSRNVAFNIIKEKTTSD 60
           MQIEDYLY + LH PLLG KP+ M  E+W L DR+ LG+I+L+LSR+VA N++KEKTT+D
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPENMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTTD 83

Query: 61  LMKALSNI----------------------------SRGSDKLKFGEIRDVVLSESIHKR 120
           LMKALS I                            S G +KLK+ +IRD++L+E I +R
Sbjct: 84  LMKALSEIDFDDEIRALIILDSLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRQR 143

Query: 121 ETGDSSGN--ALSVDRRGRSKPKGPNKGRSKS----KSREKSPNRPNVTCWNCGEKGHFR 180
           + G++SG+  AL+++ RGR   +  N+GRSKS    ++  KS     V CWNCG+ GHF+
Sbjct: 144 DAGETSGSGSALNLETRGRGNDRNSNRGRSKSINSNRNISKSRLSQQVQCWNCGKTGHFK 203

Query: 181 TGCTRPKRKQNHKSGDDDDSINSAEDIGDALILSVDSSIESWILDSGASFHSSPNKELFQ 240
             C  PK+K      ++DDS N                +   +LDS ASFH++ ++E+ Q
Sbjct: 204 RQCKSPKKK------NEDDSANV---------------VTEEVLDSRASFHTTSHREIIQ 263

Query: 241 NFKSGNFEKVYLADNKDLEIKGKGDVCIKTPAGNRWTLKDIRYIPALKRNLISIGQLDST 300
           N+  G+F KVYLAD   L++ G GDV I  P G+ W L+ +++I  L+RNLIS+GQLD  
Sbjct: 264 NYVVGDFGKVYLADGSTLDVVGLGDVRISLPNGSVWLLEKVQHISDLRRNLISVGQLDDE 323

Query: 301 SYATKLGKGSWKIMKGATVVARGSKSGTLDTTTGCMNIAAVAESASNSSLRHNRLEPMSA 360
            +A     G+WK+  GA V+ARG K+ TL  T+   +  AVA++++ +SL H RL  MS 
Sbjct: 324 GHAIPFVGGTWKVTNGARVLARGKKTSTLYMTSCPRDTIAVADASTGTSLWHRRLGHMSE 383

Query: 361 KGMKRLAAKGVLEGLKSVDVGRCENYVMSKQKRVSFTRTAREVKKVRLEM 377
           K MK L +KG L  LKS+D   CE+ ++ KQK+VSF  T +  K  +LE+
Sbjct: 384 KWMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLITGKTPKAEKLEL 412

[Close]
BLAST of CmoCh04G020780 vs. TAIR10
Match: AT3G29785.1 (AT3G29785.1 unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 2.8e-12
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 1 

Query: 1  MQIEDYLYQKDLHEPLLGVKPDTMTTEQWKLKDRKALGMIQLSLSRNVAFNIIKEKTTSD 60
          M+IEDYLY K LH+PL G K +TM+ + W +  R+ L +I+L++S+N+A N+ KEK+   
Sbjct: 19 MKIEDYLYGKKLHQPL-GKKVETMSQDDWNILYRQVLDVIRLTISKNIAHNVAKEKSPDG 78

Query: 61 LMKALSNI 69
          LMK LS+I
Sbjct: 79 LMKVLSDI 85

[Close]
BLAST of CmoCh04G020780 vs. NCBI nr
Match: gi|147798867|emb|CAN65867.1| (hypothetical protein VITISV_034935 [Vitis vinifera])

HSP 1 Score: 343.2 bits (879), Expect = 6.3e-91
Identity = 191/412 (46.36%), Postives = 274/412 (66.50%), Query Frame = 1 

Query: 1   MQIEDYLYQKDLHEPLLGVKPDTMTTEQWKLKDRKALGMIQLSLSRNVAFNIIKEKTTSD 60
           MQIEDYLY + LH PLLG KP++M  E+W L DR+ LG+I+L+LSR+VA N++KEKTT+D
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83

Query: 61  LM-----------------------------KALSNISRGSDKLKFGEIRDVVLSESIHK 120
           LM                              A+SN S G +KLK+ +IRD++L+E I +
Sbjct: 84  LMKALSEIDFDDEIRALIVLASLPNSWEAMRMAVSN-STGKEKLKYNDIRDLILAEEIRR 143

Query: 121 RETGDSSGN--ALSVDRRGRSKPKGPNKGRSKSKS----REKSPNRPNVTCWNCGEKGHF 180
           R+ G++SG+  AL+++ RGR   +  N+GRS S++    R KS +   V CWNCG+ GHF
Sbjct: 144 RDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHF 203

Query: 181 RTGCTRPKRKQNHKSGDDDDSINS-AEDIGDALILSVDSSIESWILDSGASFHSSPNKEL 240
           +  C  PK+K      ++DDS N+  E++ DAL+L+VDS ++ W+LDSGASFH++P++E+
Sbjct: 204 KRQCKSPKKK------NEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHREI 263

Query: 241 FQNFKSGNFEKVYLADNKDLEIKGKGDVCIKTPAGNRWTLKDIRYIPALKRNLISIGQLD 300
            QN+ +G+F KVYLAD   L++ G GDV I  P G+ W L+ +R+IP L+RNLIS+GQLD
Sbjct: 264 IQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLD 323

Query: 301 STSYATKLGKGSWKIMKGATVVARGSKSGTLDTTTGCMNIAAVAESASNSSLRHNRLEPM 360
              +A     G+WK+ KGA V+ARG K+GTL  T+   +  AVA++++++SL H RL  M
Sbjct: 324 DEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHM 383

Query: 361 SAKGMKRLAAKGVLEGLKSVDVGRCENYVMSKQKRVSFTRTAREVKKVRLEM 377
           S KGMK L +KG L  LKS+D   CE+ ++ KQK+VSF +T R  K  +LE+
Sbjct: 384 SEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLEL 428

[Close]
BLAST of CmoCh04G020780 vs. NCBI nr
Match: gi|147852577|emb|CAN80650.1| (hypothetical protein VITISV_022906 [Vitis vinifera])

HSP 1 Score: 307.4 bits (786), Expect = 3.8e-80
Identity = 171/384 (44.53%), Postives = 247/384 (64.32%), Query Frame = 1 

Query: 1   MQIEDYLYQKDLHEPLLGVKPDTMTTEQWKLKDRKALGMIQLSLSRNVAFNIIKEKTTSD 60
           MQIEDYLY++ LH PLLG KP++M  E+W L D++ L +I+L+LSR+VA N++KEKTT+D
Sbjct: 24  MQIEDYLYRRKLHLPLLGTKPESMKAEEWALLDKQVLEVIRLTLSRSVAHNVVKEKTTTD 83

Query: 61  LMKALSNISR-------GSDKLKFGEIRDVVLSESIHKRETGDSSGNALSVDRRGRSKPK 120
           LMKALS   R       G +KLK+ +IRD++L E I +R+ G++S +  +++ + R K  
Sbjct: 84  LMKALSEAMRMVVSNSTGKEKLKYNDIRDLILVEEIRRRDAGETSRSGSALNLKTRGK-- 143

Query: 121 GPNKGRSKSKSREKSPNRPNVTCWNCGEKGHFRTGCTRPKRKQNHKSGDDDDSINS-AED 180
                                        GHF+  C  PK+K      ++DDS N+  E+
Sbjct: 144 -----------------------------GHFKRQCKNPKKK------NEDDSANAVTEE 203

Query: 181 IGDALILSVDSSIESWILDSGASFHSSPNKELFQNFKSGNFEKVYLADNKDLEIKGKGDV 240
           + DAL+L+VDS ++ W+LDSG SFH+ P++E+ QN+ +G+F KVYLAD   L++ G GDV
Sbjct: 204 VQDALLLTVDSPLDDWVLDSGTSFHTIPHREIIQNYIAGDFGKVYLADGSALDVVGLGDV 263

Query: 241 CIKTPAGNRWTLKDIRYIPALKRNLISIGQLDSTSYATKLGKGSWKIMKGATVVARGSKS 300
            I  P G+ W L+ +R+IP L+RNLISIGQLD   +A     G+WK+ KGA V+ARG K+
Sbjct: 264 RISLPNGSVWLLEKVRHIPDLRRNLISIGQLDDEGHAILFVGGTWKVTKGARVLARGKKT 323

Query: 301 GTLDTTTGCMNIAAVAESASNSSLRHNRLEPMSAKGMKRLAAKGVLEGLKSVDVGRCENY 360
           GTL  T+   +  AVA+++ ++S+ H RL  MS KGMK L +KG L  LKS+D   CE+ 
Sbjct: 324 GTLYMTSCPRDTIAVADASIDTSIWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESC 370

Query: 361 VMSKQKRVSFTRTAREVKKVRLEM 377
           ++ KQK+VSF +T R  K  +LE+
Sbjct: 384 ILGKQKKVSFLKTGRTPKAEKLEL 370

[Close]
BLAST of CmoCh04G020780 vs. NCBI nr
Match: gi|147828211|emb|CAN71109.1| (hypothetical protein VITISV_001479 [Vitis vinifera])

HSP 1 Score: 299.3 bits (765), Expect = 1.0e-77
Identity = 177/429 (41.26%), Postives = 263/429 (61.31%), Query Frame = 1 

Query: 1   MQIEDYLYQKDLHEPLLGVKPDTMTTEQW-------------------KLKDRKALGMIQ 60
           MQIEDYLY + LH PLLG KP++M  E+W                   K+   K L  ++
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQALSGMYEKPSANNKVHLMKKLFNLK 83

Query: 61  LSLSRNVA-----FNIIKEKTTS----------------------DLMKALSNISRGSDK 120
           ++ + +VA     FN I  + +S                      + M+   + S G +K
Sbjct: 84  MAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEK 143

Query: 121 LKFGEIRDVVLSESIHKRETGDSSGN--ALSVDRRGRSKPKGPNKGRSKSKS----REKS 180
           LK+ +IRD++L+E I +R+ G++SG+  AL+++ RGR   +  N+GRS S++    R KS
Sbjct: 144 LKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKS 203

Query: 181 PNRPNVTCWNCGEKGHFRTGCTRPKRKQNHKSGDDDDSINS-AEDIGDALILSVDSSIES 240
            +   V CWNCG+ GHF+  C  PK+K      ++DDS N+  E++ DAL+L+VDS ++ 
Sbjct: 204 RSGQQVQCWNCGKTGHFKRQCKSPKKK------NEDDSANAVTEEVQDALLLAVDSPLDD 263

Query: 241 WILDSGASFHSSPNKELFQNFKSGNFEKVYLADNKDLEIKGKGDVCIKTPAGNRWTLKDI 300
           W+LDSGASFH++P++E+ QN+ +G+F KVYLAD   L++ G GDV I  P G+ W L+ +
Sbjct: 264 WVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 323

Query: 301 RYIPALKRNLISIGQLDSTSYATKLGKGSWKIMKGATVVARGSKSGTLDTTTGCMNIAAV 360
           R+IP L+RNLIS+GQLD   +A     G+WK+ KGA V+ARG K+GTL  T+   +  AV
Sbjct: 324 RHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAV 383

Query: 361 AESASNSSLRHNRLEPMSAKGMKRLAAKGVLEGLKSVDVGRCENYVMSKQKRVSFTRTAR 377
           A++++++SL H RL  MS KGMK L +KG L  LKS+D   CE+ ++ KQK+VSF +T R
Sbjct: 384 ADASTDTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGR 443

[Close]
BLAST of CmoCh04G020780 vs. NCBI nr
Match: gi|147865775|emb|CAN78986.1| (hypothetical protein VITISV_015274 [Vitis vinifera])

HSP 1 Score: 298.9 bits (764), Expect = 1.4e-77
Identity = 176/410 (42.93%), Postives = 249/410 (60.73%), Query Frame = 1 

Query: 1   MQIEDYLYQKDLHEPLLGVKPDTMTTEQWKLKDRKALGMIQLSLSRNVAFNIIKEKTTSD 60
           MQIEDYLY + LH PLLG KP+ M  E+W L DR+ LG+I+L+LSR+VA N++KEKTT+D
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPENMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTTD 83

Query: 61  LMKALSNI----------------------------SRGSDKLKFGEIRDVVLSESIHKR 120
           LMKALS I                            S G +KLK+ +IRD++L+E I +R
Sbjct: 84  LMKALSEIDFDDEIRALIILDSLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRQR 143

Query: 121 ETGDSSGN--ALSVDRRGRSKPKGPNKGRSKS----KSREKSPNRPNVTCWNCGEKGHFR 180
           + G++SG+  AL+++ RGR   +  N+GRSKS    ++  KS     V CWNCG+ GHF+
Sbjct: 144 DAGETSGSGSALNLETRGRGNDRNSNRGRSKSINSNRNISKSRLSQQVQCWNCGKTGHFK 203

Query: 181 TGCTRPKRKQNHKSGDDDDSINSAEDIGDALILSVDSSIESWILDSGASFHSSPNKELFQ 240
             C  PK+K      ++DDS N                +   +LDS ASFH++ ++E+ Q
Sbjct: 204 RQCKSPKKK------NEDDSANV---------------VTEEVLDSRASFHTTSHREIIQ 263

Query: 241 NFKSGNFEKVYLADNKDLEIKGKGDVCIKTPAGNRWTLKDIRYIPALKRNLISIGQLDST 300
           N+  G+F KVYLAD   L++ G GDV I  P G+ W L+ +++I  L+RNLIS+GQLD  
Sbjct: 264 NYVVGDFGKVYLADGSTLDVVGLGDVRISLPNGSVWLLEKVQHISDLRRNLISVGQLDDE 323

Query: 301 SYATKLGKGSWKIMKGATVVARGSKSGTLDTTTGCMNIAAVAESASNSSLRHNRLEPMSA 360
            +A     G+WK+  GA V+ARG K+ TL  T+   +  AVA++++ +SL H RL  MS 
Sbjct: 324 GHAIPFVGGTWKVTNGARVLARGKKTSTLYMTSCPRDTIAVADASTGTSLWHRRLGHMSE 383

Query: 361 KGMKRLAAKGVLEGLKSVDVGRCENYVMSKQKRVSFTRTAREVKKVRLEM 377
           K MK L +KG L  LKS+D   CE+ ++ KQK+VSF  T +  K  +LE+
Sbjct: 384 KWMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLITGKTPKAEKLEL 412

[Close]
BLAST of CmoCh04G020780 vs. NCBI nr
Match: gi|1012357422|gb|KYP68607.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 298.1 bits (762), Expect = 2.3e-77
Identity = 165/334 (49.40%), Postives = 229/334 (68.56%), Query Frame = 1 

Query: 64  ALSNISRGSDKLKFGEIRDVVLSESIHKRETGD----SSGNALSVDRRGRSKPKGPN-KG 123
           A+S+ +R  +KLK  +IRD++LSE + +R++ +    +S +AL+ + RGR+  KG N +G
Sbjct: 139 AVSSSAR-DNKLKLNDIRDLILSEDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNSRG 198

Query: 124 RSKSKSREKSPNRPNVTCWNCGEKGHFRTGCTRPKRKQNHKSGDDDDSINSAED-IGDAL 183
           RSKS+++ +   R ++ CWNC ++GHF   C  PK+ +NHK  DDD+S N+A D I DAL
Sbjct: 199 RSKSRAKGQPKFRNDIVCWNCDKRGHFTNQCKAPKKNKNHKKRDDDESANAATDEIDDAL 258

Query: 184 ILSVDSSIESWILDSGASFHSSPNKELFQNFKSGNFEKVYLADNKDLEIKGKGDVCIKTP 243
           I S+DS IESWI+DSGASFH++P+ EL  N+ SG F KVYLAD K L I GKGD+ I+T 
Sbjct: 259 ICSLDSPIESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAIRTS 318

Query: 244 AGNRWTLKDIRYIPALKRNLISIGQLDSTSYATKLGKGSWKIMKGATVVARGSKSGTLDT 303
           +G+ WTLK++R+IPALKRNLIS+GQLD   + T  G G+WK+ KG  +VARG K G+L  
Sbjct: 319 SGSHWTLKNVRHIPALKRNLISVGQLDDEGHETTFGDGAWKVKKGNLIVARGKKRGSLYM 378

Query: 304 TTGCMNIAAVAESASNSSLRHNRLEPMSAKGMKRLAAKGVLEGLKSVDVGRCENYVMSKQ 363
                N+ AV E+A+NS L H RL  MS KGMK +A KG L  LK VDVG CE+ ++ KQ
Sbjct: 379 VAD-ENMIAVTEAANNSFLWHQRLGHMSEKGMKLMATKGKLSKLKHVDVGTCEHCILGKQ 438

Query: 364 KRVSFTRTAREVKKVRLEMEPDVEQGSKTTKQVG 392
           +++SF+R  + +K  RLE+      G    K +G
Sbjct: 439 RKISFSRQGKTLKTERLELVHTDVWGPAPVKSLG 470

The following BLAST results are available for this feature:
BLAST of CmoCh04G020780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC1.2e-3331.36Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of CmoCh04G020780 vs. TrEMBL
Match NameE-valueIdentityDescription
K4BJ49_SOLLC7.7e-9663.52Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A5BPB3_VITVI4.4e-9146.36Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034935 PE=4 SV=1[more]
A5B0E4_VITVI2.7e-8044.53Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022906 PE=4 SV=1[more]
A5CBM1_VITVI7.3e-7841.26Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001479 PE=4 SV=1[more]
A5BHR8_VITVI9.5e-7842.93Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015274 PE=4 SV=1[more]
BLAST of CmoCh04G020780 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G29785.12.8e-1250.00 unknown protein[more]
BLAST of CmoCh04G020780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147798867|emb|CAN65867.1|6.3e-9146.36hypothetical protein VITISV_034935 [Vitis vinifera][more]
gi|147852577|emb|CAN80650.1|3.8e-8044.53hypothetical protein VITISV_022906 [Vitis vinifera][more]
gi|147828211|emb|CAN71109.1|1.0e-7741.26hypothetical protein VITISV_001479 [Vitis vinifera][more]
gi|147865775|emb|CAN78986.1|1.4e-7742.93hypothetical protein VITISV_015274 [Vitis vinifera][more]
gi|1012357422|gb|KYP68607.1|2.3e-7749.40Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020780.1CmoCh04G020780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 134..154
score: 6.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 136..151
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 118..157
score: 1.3
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 105..376
score: 4.4E-51coord: 24..35
score: 4.4
NoneNo IPR availablePANTHERPTHR11439:SF127SUBFAMILY NOT NAMEDcoord: 24..35
score: 4.4E-51coord: 105..376
score: 4.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020780Watermelon (97103) v2cmowmbB699
CmoCh04G020780Wax gourdcmowgoB0902
CmoCh04G020780Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G020780Cucurbita maxima (Rimu)cmacmoB741
CmoCh04G020780Watermelon (Charleston Gray)cmowcgB623
CmoCh04G020780Watermelon (97103) v1cmowmB733
CmoCh04G020780Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020780Cucurbita pepo (Zucchini)cmocpeB680
CmoCh04G020780Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G020780Bottle gourd (USVL1VR-Ls)cmolsiB623