CmoCh04G020740 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionATP synthase subunit a
LocationCmo_Chr04 : 11868409 .. 11871813 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCTTGGTCACGACCAGCTAAAGCTAAAGTTCCATTAAAGAGCGTTTCCACGAGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCTTGAGCCACCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTAGTATAGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACGTAGGTTCAGGGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTACAAATAACATAAAGAAAAGCTACATCTAGTACCGGACCAATGATTTGAGCGATACGTCCCAAGTTGTTTTTTTCAAGCGTGGAAACTTCAGAACCAGAAGTAGTAGGATTTGTTCTCATATGAAAGACAAAGTCAAGGGAGAAGTCGGCCCCTGAAAGAATACCTATGCTTAAAAAGATAAACCCTAGACTAATAATACGATAACTCCAATGATCTAATTGTTGAATCAGTTGAGACTTATAATAATTATTATAAGAAAAAAATAAGTGTTTCTTAAAACATTGTTCTCTTCGTTCATGTATTGGATCTCATCAAAGGAAAATAACGCATTTAATAAATGTTTTTTTTTACCAAAAATTCTTAGAGTTTTGAAATGTAATCACTATAAGAGCTACTGAAAATAATGATCCACATAAAAGAGATGCATAACCCAATACCCTCATACTTACTTGCATCATTAACCAATGAGATTGGAGAGCGGGAACTAATAGTGGGGATTGATGCATTTCAGTTAAAAAACCTGAAGTAGCAAAACCTTGGGTAAAAATAGTACTTGGTGCAGTTAAAAAACCTGAAGTAGCAAAACCTGAATGGTTTTATATTTTTTAAAATACGTAAATAGATGAATAATGGAGAAACTCCATGGAAGAAATAGTAATGATTCATATAAATCACTTAATGGTAAATGCCTCAAATAAATCCAACGAGTAACTAATAATCCTGTTATACAGAAAAAAGTAGCTATCATGCCCTTTTCTAACGAAGCATAGAGTCCTACGGTTTCATCGACTAATAAGGTTATCAAATTAATTTCAATATCTCTAAGCCACACATCAATCTAAGAAACCAGAGCGGGCTACTAGCGTTGACCTTGTCGAGCTAACAAGCAATGATCAGCCAGCCCCTTGGGCAAAAAGATCACTGATAGGCATGGAGATGGCTATTTGGAGTCTGAGTTTAGAGTTCACTATCTGAAATTCAATATCCCTATCTCCCGTAAAGACTAATCACTTTCTTGAGTGGCTACTTGAATCTCAGCTTACCACCATCCTGTCAAGTGAAGAAAGATCAGACTAGAGACCAAGCGCATTAGTATACCAACTAACATACAGAGAAGAAAAGAAGTCAATCCAGTACCAACTAACATACAGATAGGAAATACAGTAACATACAGACAGAGAAGAAGGACAGACAGTAGGAACATACAGAGAAGAAGGAAGTACAGTAACATACATACAGAGGTTCACCGCAGGGAATGAATCAATAGAGTTTATTAATCAGTACACAGACAGAAAGGTAATGCAGAATGGAAGTAGGAAAAGGAGGGAAGAAGTCCAAGTAGTGAGTGCAGTAGTTAGTTCTTCCATTATAGTAGAGCCAGCTAGGAGGAAGTTAAAGTAGAGGCAGGAAGTAGTAAGTTCTTACAGAGTAGTAGGAAGTGGAAGAGTTCGAAGTTCAGTTCTGTAGCTAGCTTTATGGCTTGACTTGGTCCTTCCAACCAAGTAAGCAAAAGAAAGGAGAAGTGCCCTCAGTAGCTTAGCATCATAAACAGTACTAGGTTAGGATCATAAACAGGACTAGGTCAAGATCATATACTAGTTTAACAGCATAACACAGTAAAGAGGTTAGGATCATTAGGTCAGGAGTAGAACACAGTAAGAGTTCAGGATCATAGACTAACTAGTTTAATAGCGAGTAGGAGTGAAACAGCTCGACCAAAGGGAGAGGAGTGAGGGATCAGAAACTACTTTAACAGCATAAACAGTAGGAGTGAAACAGCTCGACCAAAGGGAGAGGAGTGAGGGATCAGAGACTAGTTTAACAGTATAAAGAGTAGGAGTGAAACAACTCGACCAAAGGGAGAGGAGTGAGGGATCAAAAAGTAGTTTAACAGCGAGTAGGAGTGAGCGAGAATTAGGTCAGGAGCATAAACAATAGTAATAATGATTTGATTTGCACTCCTCAGGGCTTACTTACTGCTTGTGCATCGGGATTTCTCACTGACTTGTACAAGTCAGGAACGAAGTGCGAGACCGGAAGGGAGAGGAACAAAGTCATGATTCAACTCGGAACAAGGTATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCTATTCATGGGGGGGGGGGGTTGGAGTATCACAGGAGGGAGTATAACGAATTCGAGTATTTGGAGTTACGAAGGTGTGGCCGGCACCATAATATCTGATTGGGGAGGAAGATTAGAATTAGAGATTGATATGGGGCGTTCTAATCGAAGGGTCATACTTCTCGGCCCTATTACGGTAAGGCCAATGCACCAGCCAGCCGGTGTGGTGGCGAACAGGCTGTGCTGTAAGCTAAGCTGTTCCCCTTGTAGACGGAGGAGATAAAAGTGTGCCGTGCTTTCTTCATAAGATTCTATAGTAGCACTAGTATCTTATTTGATTTCACTTAGCTTGCCCCTCCCATCCCATGCCTTTCTTTGTTGAACCAACCCAACAGGCGATTTCCGACAAGTCTTTCTTCATTTTGCGAGCAAGAAGGGAAACTACAGGGATGAAATGAAAAGTGTTTCTTACGATTACACCCAACAGCCCACTTGAGCAATTTTCCATTCTCCCATTGCTTCCTATGAATATAGGTAACTTTTATTTCTCATTCACAAATCCCTCTTTCTTTATGCTGCTAACTCTCAGCTTGGTCCTACTTCTGGTTTATTTTGTTACTAAAAACGGAGGAGGAAATTCAGTACCAAATGCTTGGCAATCCTTGATAGAGCTTATTTATGATTTCGTGTCGAACCTGGTAAACGAACAAATAGGTGGTCTTTCCGAATCAAAAAATGTGAAACAAAAGTTTTTCCCTCGCATCTCAGTCACTTTTGACTTTTTCGTTATTTCGTAATCCCCAGGGTATGATACCTTATAGCTTCACAGTTACAAGTCATTTTTTCATTACTTTGGGTCTCTCATTTTCTCTTTTTATTGGTATTACTATAGTGGGATTTCAAAGAAATGGGCGTTAGAATTAGAGGATTCCGTCCCGCCCAGTATAAATTCTCACTTTTTGAAGATCCTCAGTGCCAAATCCATCCAACAAAAGATGGCTTGAATTGGACTCCTTTTGGCAAATTTCATTGA

mRNA sequence

ATGGTTTCTTGGTCACGACCAGCTAAAGCTAAAGTTCCATTAAAGAGCGTTTCCACGAGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACGTAGGTTCAGGGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGGCTTACTTACTGCTTGTGCATCGGGATTTCTCACTGACTTGTACAAGTCAGGAACGAAGTGCGAGACCGGAAGGGAGAGGAACAAAGTCATGATTCAACTCGGAACAAGGAATAACCTATTCATGGGGGGGGGGGGTTGGAGTATCACAGGAGGGAGTATAACGAATTCGAGTATTTGGAGTTACGAAGGTGTGGCCGGCACCATAATATCTGATTGGGGAGGAAGATTAGAATTAGAGATTGATATGGGGCGTTCTAATCGAAGGGTCATACTTCTCGGCCCTATTACGGTAAGGCCAATGCACCAGCCAGCCGGTAACTTTTATTTCTCATTCACAAATCCCTCTTTCTTTATGCTGCTAACTCTCAGCTTGGTCCTACTTCTGGTTTATTTTGTTACTAAAAACGGAGGAGGAAATTCAGTACCAAATGCTTGGCAATCCTTGATAGAGCTTATTTATGATTTCGTGTCGAACCTGGTAAACGAACAAATAGGTGGTCTTTCCGAATCAAAAAATGTGAAACAAAAGTTTTTCCCTCGCATCTCAGTCACTTTTGACTTTTTCTGGGATTTCAAAGAAATGGGCGTTAGAATTAGAGGATTCCGTCCCGCCCAGTATAAATTCTCACTTTTTGAAGATCCTCAGTGCCAAATCCATCCAACAAAAGATGGCTTGAATTGGACTCCTTTTGGCAAATTTCATTGA

Coding sequence (CDS)

ATGGTTTCTTGGTCACGACCAGCTAAAGCTAAAGTTCCATTAAAGAGCGTTTCCACGAGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACGTAGGTTCAGGGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGGCTTACTTACTGCTTGTGCATCGGGATTTCTCACTGACTTGTACAAGTCAGGAACGAAGTGCGAGACCGGAAGGGAGAGGAACAAAGTCATGATTCAACTCGGAACAAGGAATAACCTATTCATGGGGGGGGGGGGTTGGAGTATCACAGGAGGGAGTATAACGAATTCGAGTATTTGGAGTTACGAAGGTGTGGCCGGCACCATAATATCTGATTGGGGAGGAAGATTAGAATTAGAGATTGATATGGGGCGTTCTAATCGAAGGGTCATACTTCTCGGCCCTATTACGGTAAGGCCAATGCACCAGCCAGCCGGTAACTTTTATTTCTCATTCACAAATCCCTCTTTCTTTATGCTGCTAACTCTCAGCTTGGTCCTACTTCTGGTTTATTTTGTTACTAAAAACGGAGGAGGAAATTCAGTACCAAATGCTTGGCAATCCTTGATAGAGCTTATTTATGATTTCGTGTCGAACCTGGTAAACGAACAAATAGGTGGTCTTTCCGAATCAAAAAATGTGAAACAAAAGTTTTTCCCTCGCATCTCAGTCACTTTTGACTTTTTCTGGGATTTCAAAGAAATGGGCGTTAGAATTAGAGGATTCCGTCCCGCCCAGTATAAATTCTCACTTTTTGAAGATCCTCAGTGCCAAATCCATCCAACAAAAGATGGCTTGAATTGGACTCCTTTTGGCAAATTTCATTGA
Homology
[Close]
BLAST of CmoCh04G020740 vs. Swiss-Prot
Match: ATP6_TOBAC (ATP synthase subunit a OS=Nicotiana tabacum GN=ATP6 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.8e-32
Identity = 72/83 (86.75%), Postives = 73/83 (87.95%), Query Frame = 1 

Query: 165 GNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSNLVNEQI 224
           GN YFSFTNPS FMLLTLSLVLLLVYFVTK GGGNSVPNAWQSL+ELIYDFV N VNEQI
Sbjct: 147 GNLYFSFTNPSLFMLLTLSLVLLLVYFVTKKGGGNSVPNAWQSLVELIYDFVLNPVNEQI 206

Query: 225 GGLSESKNVKQKFFPRISVTFDF 248
           GGL  S NVKQKF PRISVTF F
Sbjct: 207 GGL--SGNVKQKFSPRISVTFTF 227

[Close]
BLAST of CmoCh04G020740 vs. Swiss-Prot
Match: ATP6_VICFA (ATP synthase subunit a OS=Vicia faba GN=ATP6 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.4e-30
Identity = 68/83 (81.93%), Postives = 72/83 (86.75%), Query Frame = 1 

Query: 165 GNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSNLVNEQI 224
           G+ YFSFTNPS FMLLTLSLVLLLV+FVTK GGG SVPNAWQSL+ELIYDFV NLVNEQI
Sbjct: 47  GDLYFSFTNPSLFMLLTLSLVLLLVHFVTKKGGGKSVPNAWQSLVELIYDFVPNLVNEQI 106

Query: 225 GGLSESKNVKQKFFPRISVTFDF 248
           GGL  S NVKQ+FFP I VTF F
Sbjct: 107 GGL--SGNVKQQFFPCIFVTFTF 127

[Close]
BLAST of CmoCh04G020740 vs. Swiss-Prot
Match: ATP6_OENBE (ATP synthase subunit a OS=Oenothera berteroana GN=ATP6 PE=2 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 9.9e-30
Identity = 69/83 (83.13%), Postives = 70/83 (84.34%), Query Frame = 1 

Query: 165 GNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSNLVNEQI 224
           GN YFSFTN S FMLLTLSLVLLLV FVTK GGGN VPNAWQSL+ELIYDFV NLVNEQI
Sbjct: 46  GNLYFSFTNSSLFMLLTLSLVLLLVNFVTKKGGGNLVPNAWQSLVELIYDFVLNLVNEQI 105

Query: 225 GGLSESKNVKQKFFPRISVTFDF 248
           GGL  S NVKQKFFP I VTF F
Sbjct: 106 GGL--SGNVKQKFFPCILVTFTF 126

[Close]
BLAST of CmoCh04G020740 vs. Swiss-Prot
Match: ATP61_ARATH (ATP synthase subunit a-1 OS=Arabidopsis thaliana GN=ATP6-1 PE=2 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-28
Identity = 67/89 (75.28%), Postives = 71/89 (79.78%), Query Frame = 1 

Query: 159 PMHQPAGNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSN 218
           PMH   GNFYFSFTN S FMLLTLS  LLL++FVTK GGGN VPNAWQSL+EL+YDFV N
Sbjct: 146 PMH--IGNFYFSFTNSSLFMLLTLSFFLLLIHFVTKKGGGNLVPNAWQSLVELLYDFVLN 205

Query: 219 LVNEQIGGLSESKNVKQKFFPRISVTFDF 248
           LV EQIGGL  S NVKQ FFP I VTF F
Sbjct: 206 LVKEQIGGL--SGNVKQMFFPCILVTFLF 230

[Close]
BLAST of CmoCh04G020740 vs. Swiss-Prot
Match: ATP62_ARATH (ATP synthase subunit a-2 OS=Arabidopsis thaliana GN=ATP6-2 PE=2 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-28
Identity = 67/89 (75.28%), Postives = 71/89 (79.78%), Query Frame = 1 

Query: 159 PMHQPAGNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSN 218
           PMH   GNFYFSFTN S FMLLTLS  LLL++FVTK GGGN VPNAWQSL+EL+YDFV N
Sbjct: 110 PMH--IGNFYFSFTNSSLFMLLTLSFFLLLIHFVTKKGGGNLVPNAWQSLVELLYDFVLN 169

Query: 219 LVNEQIGGLSESKNVKQKFFPRISVTFDF 248
           LV EQIGGL  S NVKQ FFP I VTF F
Sbjct: 170 LVKEQIGGL--SGNVKQMFFPCILVTFLF 194

[Close]
BLAST of CmoCh04G020740 vs. TrEMBL
Match: G3EU41_CUCME (ATP synthase subunit a OS=Cucumis melo subsp. melo GN=atp6 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 76/89 (85.39%), Postives = 79/89 (88.76%), Query Frame = 1 

Query: 159 PMHQPAGNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSN 218
           PMH   GNFYFSFTNPS FMLLTLSLVLLL++FVTKNGGGNSVPNAWQSL+ELIYDFV N
Sbjct: 25  PMH--IGNFYFSFTNPSLFMLLTLSLVLLLLHFVTKNGGGNSVPNAWQSLVELIYDFVPN 84

Query: 219 LVNEQIGGLSESKNVKQKFFPRISVTFDF 248
           LVNEQIGGL  S NVKQKFFPRISVT  F
Sbjct: 85  LVNEQIGGL--SGNVKQKFFPRISVTLTF 109

[Close]
BLAST of CmoCh04G020740 vs. TrEMBL
Match: A0A142BZ05_ZIZJJ (ATP synthase subunit a OS=Ziziphus jujuba GN=atp6 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 1 

Query: 165 GNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSNLVNEQI 224
           GN YFSFTNPS FMLLTLSLVLLLV+FVTKNGGGNSVPNAWQSL+ELIYDFV NLVNEQI
Sbjct: 22  GNLYFSFTNPSLFMLLTLSLVLLLVHFVTKNGGGNSVPNAWQSLVELIYDFVPNLVNEQI 81

Query: 225 GGLSESKNVKQKFFPRISVTFDF 248
           GGL  S NVKQKFFPRISVTF F
Sbjct: 82  GGL--SGNVKQKFFPRISVTFTF 102

[Close]
BLAST of CmoCh04G020740 vs. TrEMBL
Match: D5I3D9_CUCPE (ATP synthase subunit a OS=Cucurbita pepo GN=atp6 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.6e-32
Identity = 73/83 (87.95%), Postives = 74/83 (89.16%), Query Frame = 1 

Query: 165 GNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSNLVNEQI 224
           GNFYFSFTN SFFMLLTLSLVLLLVYFVTKNGGGN VPNAWQSL+ELIYDFV NLVNEQI
Sbjct: 22  GNFYFSFTNSSFFMLLTLSLVLLLVYFVTKNGGGNLVPNAWQSLVELIYDFVLNLVNEQI 81

Query: 225 GGLSESKNVKQKFFPRISVTFDF 248
           GGLS S NVKQKFFP I VT  F
Sbjct: 82  GGLSGSGNVKQKFFPCILVTLTF 104

[Close]
BLAST of CmoCh04G020740 vs. TrEMBL
Match: G3EIZ6_CUCSA (ATP synthase subunit a OS=Cucumis sativus GN=atp6 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-31
Identity = 74/89 (83.15%), Postives = 78/89 (87.64%), Query Frame = 1 

Query: 159 PMHQPAGNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSN 218
           PMH   GN+YFSFTNPS FMLLTLSLVLLL++FVTKNGGGNSVPNAWQSL+ELIYDFV N
Sbjct: 16  PMH--IGNYYFSFTNPSLFMLLTLSLVLLLLHFVTKNGGGNSVPNAWQSLVELIYDFVPN 75

Query: 219 LVNEQIGGLSESKNVKQKFFPRISVTFDF 248
           LVNEQIGGL  S NVKQKFFPRI VT  F
Sbjct: 76  LVNEQIGGL--SGNVKQKFFPRILVTLTF 100

[Close]
BLAST of CmoCh04G020740 vs. TrEMBL
Match: J7MR45_MALDO (ATP synthase subunit a OS=Malus domestica GN=atp6 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.8e-31
Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 

Query: 165 GNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSNLVNEQI 224
           GN YFSFTNPS FMLLTLSLVLLLV+FVTKNGGGNSVPNAWQS +ELIYDFV NLVNEQ+
Sbjct: 69  GNLYFSFTNPSLFMLLTLSLVLLLVHFVTKNGGGNSVPNAWQSSVELIYDFVLNLVNEQM 128

Query: 225 GGLSESKNVKQKFFPRISVTFDF 248
           GGL  S NVKQKFFPRISVTF F
Sbjct: 129 GGL--SGNVKQKFFPRISVTFTF 149

[Close]
BLAST of CmoCh04G020740 vs. TAIR10
Match: AT2G07741.1 (AT2G07741.1 ATPase, F0 complex, subunit A protein)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-30
Identity = 68/89 (76.40%), Postives = 72/89 (80.90%), Query Frame = 1 

Query: 159 PMHQPAGNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSN 218
           PMH   GNFYFSFTNPS FMLLTLS  LLL++FVTK GGGN VPNAWQSL+EL+YDFV N
Sbjct: 146 PMH--IGNFYFSFTNPSLFMLLTLSFFLLLIHFVTKKGGGNLVPNAWQSLVELLYDFVLN 205

Query: 219 LVNEQIGGLSESKNVKQKFFPRISVTFDF 248
           LV EQIGGL  S NVKQ FFP I VTF F
Sbjct: 206 LVKEQIGGL--SGNVKQMFFPCILVTFLF 230

[Close]
BLAST of CmoCh04G020740 vs. TAIR10
Match: ATMG01170.1 (ATMG01170.1 ATPase, F0 complex, subunit A protein)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-30
Identity = 68/89 (76.40%), Postives = 72/89 (80.90%), Query Frame = 1 

Query: 159 PMHQPAGNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSN 218
           PMH   GNFYFSFTNPS FMLLTLS  LLL++FVTK GGGN VPNAWQSL+EL+YDFV N
Sbjct: 110 PMH--IGNFYFSFTNPSLFMLLTLSFFLLLIHFVTKKGGGNLVPNAWQSLVELLYDFVLN 169

Query: 219 LVNEQIGGLSESKNVKQKFFPRISVTFDF 248
           LV EQIGGL  S NVKQ FFP I VTF F
Sbjct: 170 LVKEQIGGL--SGNVKQMFFPCILVTFLF 194

[Close]
BLAST of CmoCh04G020740 vs. TAIR10
Match: ATMG00410.1 (ATMG00410.1 ATPase subunit 6-1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-30
Identity = 68/89 (76.40%), Postives = 72/89 (80.90%), Query Frame = 1 

Query: 159 PMHQPAGNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSN 218
           PMH   GNFYFSFTNPS FMLLTLS  LLL++FVTK GGGN VPNAWQSL+EL+YDFV N
Sbjct: 146 PMH--IGNFYFSFTNPSLFMLLTLSFFLLLIHFVTKKGGGNLVPNAWQSLVELLYDFVLN 205

Query: 219 LVNEQIGGLSESKNVKQKFFPRISVTFDF 248
           LV EQIGGL  S NVKQ FFP I VTF F
Sbjct: 206 LVKEQIGGL--SGNVKQMFFPCILVTFLF 230

[Close]
BLAST of CmoCh04G020740 vs. TAIR10
Match: ATCG00680.1 (ATCG00680.1 photosystem II reaction center protein B)

HSP 1 Score: 49.7 bits (117), Expect = 3.6e-06
Identity = 36/100 (36.00%), Postives = 47/100 (47.00%), Query Frame = 1 

Query: 31  GFPEKRSHRHVGSGPDQLLQEHSSINQLL-GLLTACASGFLTDLYKSGTKCETGRERNKV 90
           G P  R H  V + P +LL  H     L+ G   + A   L     S    +    +   
Sbjct: 2   GLPWYRVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMF 61

Query: 91  MIQLGTRNNLFMGGGGWSITGGSITNSSIWSYEGVAGTII 130
           +I   TR  +    GGW+ITGG+ITN  +WSYEGVAG  I
Sbjct: 62  VIPFMTRLGITNSWGGWNITGGTITNPGLWSYEGVAGAHI 101

[Close]
BLAST of CmoCh04G020740 vs. NCBI nr
Match: gi|345034445|gb|AEN56130.1| (ATPase subunit 6 [Cucumis melo subsp. melo])

HSP 1 Score: 148.3 bits (373), Expect = 2.1e-32
Identity = 76/89 (85.39%), Postives = 79/89 (88.76%), Query Frame = 1 

Query: 159 PMHQPAGNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSN 218
           PMH   GNFYFSFTNPS FMLLTLSLVLLL++FVTKNGGGNSVPNAWQSL+ELIYDFV N
Sbjct: 25  PMH--IGNFYFSFTNPSLFMLLTLSLVLLLLHFVTKNGGGNSVPNAWQSLVELIYDFVPN 84

Query: 219 LVNEQIGGLSESKNVKQKFFPRISVTFDF 248
           LVNEQIGGL  S NVKQKFFPRISVT  F
Sbjct: 85  LVNEQIGGL--SGNVKQKFFPRISVTLTF 109

[Close]
BLAST of CmoCh04G020740 vs. NCBI nr
Match: gi|1016470805|ref|YP_009241666.1| (ATPase subunit 6 (mitochondrion) [Ziziphus jujuba])

HSP 1 Score: 147.1 bits (370), Expect = 4.7e-32
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 1 

Query: 165 GNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSNLVNEQI 224
           GN YFSFTNPS FMLLTLSLVLLLV+FVTKNGGGNSVPNAWQSL+ELIYDFV NLVNEQI
Sbjct: 22  GNLYFSFTNPSLFMLLTLSLVLLLVHFVTKNGGGNSVPNAWQSLVELIYDFVPNLVNEQI 81

Query: 225 GGLSESKNVKQKFFPRISVTFDF 248
           GGL  S NVKQKFFPRISVTF F
Sbjct: 82  GGL--SGNVKQKFFPRISVTFTF 102

[Close]
BLAST of CmoCh04G020740 vs. NCBI nr
Match: gi|295311675|ref|YP_003587353.1| (ATPase subunit 6 [Cucurbita pepo])

HSP 1 Score: 146.4 bits (368), Expect = 8.1e-32
Identity = 73/83 (87.95%), Postives = 74/83 (89.16%), Query Frame = 1 

Query: 165 GNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSNLVNEQI 224
           GNFYFSFTN SFFMLLTLSLVLLLVYFVTKNGGGN VPNAWQSL+ELIYDFV NLVNEQI
Sbjct: 22  GNFYFSFTNSSFFMLLTLSLVLLLVYFVTKNGGGNLVPNAWQSLVELIYDFVLNLVNEQI 81

Query: 225 GGLSESKNVKQKFFPRISVTFDF 248
           GGLS S NVKQKFFP I VT  F
Sbjct: 82  GGLSGSGNVKQKFFPCILVTLTF 104

[Close]
BLAST of CmoCh04G020740 vs. NCBI nr
Match: gi|1021022983|gb|KZM80792.1| (hypothetical protein DCAR_031658 [Daucus carota subsp. sativus])

HSP 1 Score: 146.4 bits (368), Expect = 8.1e-32
Identity = 79/113 (69.91%), Postives = 87/113 (76.99%), Query Frame = 1 

Query: 165 GNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSNLVNEQI 224
           G+ YFSFTNPS FMLLTLSLVLLLV+FVTKNGGGNSVPNAWQSL+ELIYDFV N VNEQI
Sbjct: 140 GHLYFSFTNPSLFMLLTLSLVLLLVHFVTKNGGGNSVPNAWQSLVELIYDFVPNPVNEQI 199

Query: 225 GGLSESKNVKQKFFPRISVTFDFFWDFKEMGVRIRGFRPAQYKFSLFEDPQCQ 278
           GGL  S NVKQKF PRISVTF F + F+   V   G  P++ KF +  D   Q
Sbjct: 200 GGL--SGNVKQKFSPRISVTFTFSF-FRNPQVTDTGASPSRSKFHVSLDSNSQ 249

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BLAST of CmoCh04G020740 vs. NCBI nr
Match: gi|723754740|ref|XP_004253484.2| (PREDICTED: ATP synthase subunit a, partial [Solanum lycopersicum])

HSP 1 Score: 145.2 bits (365), Expect = 1.8e-31
Identity = 74/83 (89.16%), Postives = 75/83 (90.36%), Query Frame = 1 

Query: 165 GNFYFSFTNPSFFMLLTLSLVLLLVYFVTKNGGGNSVPNAWQSLIELIYDFVSNLVNEQI 224
           GNFYFSFTNPSFFMLLTLSLVLLLVYFVTK GGGNSVPNAWQSL+ELIYDFV N VNEQI
Sbjct: 198 GNFYFSFTNPSFFMLLTLSLVLLLVYFVTKKGGGNSVPNAWQSLVELIYDFVLNPVNEQI 257

Query: 225 GGLSESKNVKQKFFPRISVTFDF 248
           GGL  S NVKQKF PRISVTF F
Sbjct: 258 GGL--SGNVKQKFSPRISVTFTF 278

The following BLAST results are available for this feature:
BLAST of CmoCh04G020740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATP6_TOBAC2.8e-3286.75ATP synthase subunit a OS=Nicotiana tabacum GN=ATP6 PE=3 SV=1[more]
ATP6_VICFA3.4e-3081.93ATP synthase subunit a OS=Vicia faba GN=ATP6 PE=3 SV=1[more]
ATP6_OENBE9.9e-3083.13ATP synthase subunit a OS=Oenothera berteroana GN=ATP6 PE=2 SV=2[more]
ATP61_ARATH1.9e-2875.28ATP synthase subunit a-1 OS=Arabidopsis thaliana GN=ATP6-1 PE=2 SV=2[more]
ATP62_ARATH1.9e-2875.28ATP synthase subunit a-2 OS=Arabidopsis thaliana GN=ATP6-2 PE=2 SV=2[more]
BLAST of CmoCh04G020740 vs. TrEMBL
Match NameE-valueIdentityDescription
G3EU41_CUCME1.5e-3285.39ATP synthase subunit a OS=Cucumis melo subsp. melo GN=atp6 PE=3 SV=1[more]
A0A142BZ05_ZIZJJ3.3e-3289.16ATP synthase subunit a OS=Ziziphus jujuba GN=atp6 PE=3 SV=1[more]
D5I3D9_CUCPE5.6e-3287.95ATP synthase subunit a OS=Cucurbita pepo GN=atp6 PE=3 SV=1[more]
G3EIZ6_CUCSA1.6e-3183.15ATP synthase subunit a OS=Cucumis sativus GN=atp6 PE=3 SV=1[more]
J7MR45_MALDO4.8e-3186.75ATP synthase subunit a OS=Malus domestica GN=atp6 PE=3 SV=1[more]
BLAST of CmoCh04G020740 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07741.11.2e-3076.40 ATPase, F0 complex, subunit A protein[more]
ATMG01170.11.2e-3076.40ATMG01170.1 ATPase, F0 complex, subunit A protein[more]
ATMG00410.11.2e-3076.40ATMG00410.1 ATPase subunit 6-1[more]
ATCG00680.13.6e-0636.00ATCG00680.1 photosystem II reaction center protein B[more]
BLAST of CmoCh04G020740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|345034445|gb|AEN56130.1|2.1e-3285.39ATPase subunit 6 [Cucumis melo subsp. melo][more]
gi|1016470805|ref|YP_009241666.1|4.7e-3289.16ATPase subunit 6 (mitochondrion) [Ziziphus jujuba][more]
gi|295311675|ref|YP_003587353.1|8.1e-3287.95ATPase subunit 6 [Cucurbita pepo][more]
gi|1021022983|gb|KZM80792.1|8.1e-3269.91hypothetical protein DCAR_031658 [Daucus carota subsp. sativus][more]
gi|723754740|ref|XP_004253484.2|1.8e-3189.16PREDICTED: ATP synthase subunit a, partial [Solanum lycopersicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000568ATP_synth_F0_asu
Vocabulary: Molecular Function
TermDefinition
GO:0015078hydrogen ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0005743 mitochondrial inner membrane
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020740.1CmoCh04G020740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000568ATPase, F0 complex, subunit APANTHERPTHR11410ATP SYNTHASE SUBUNIT Acoord: 165..247
score: 1.3
IPR000568ATPase, F0 complex, subunit APFAMPF00119ATP-synt_Acoord: 176..252
score: 2.
NoneNo IPR availablePANTHERPTHR11410:SF0ATP SYNTHASE SUBUNIT Acoord: 165..247
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020740Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G020740Cucurbita maxima (Rimu)cmacmoB741
CmoCh04G020740Watermelon (Charleston Gray)cmowcgB623
CmoCh04G020740Watermelon (97103) v1cmowmB733
CmoCh04G020740Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020740Cucurbita pepo (Zucchini)cmocpeB680
CmoCh04G020740Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G020740Bottle gourd (USVL1VR-Ls)cmolsiB623
CmoCh04G020740Watermelon (97103) v2cmowmbB699
CmoCh04G020740Wax gourdcmowgoB0902