CmoCh04G020730 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G020730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionATP synthase subunit c, chloroplastic
LocationCmo_Chr04 : 11864495 .. 11864740 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGATTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAA

mRNA sequence

ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGATTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAA

Coding sequence (CDS)

ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGATTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAA
BLAST of CmoCh04G020730 vs. Swiss-Prot
Match: ATPH_ADICA (ATP synthase subunit c, chloroplastic OS=Adiantum capillus-veneris GN=atpH PE=2 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 4.5e-33
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. Swiss-Prot
Match: ATPH_ILLOL (ATP synthase subunit c, chloroplastic OS=Illicium oligandrum GN=atpH PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.5e-33
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. Swiss-Prot
Match: ATPH_JASNU (ATP synthase subunit c, chloroplastic OS=Jasminum nudiflorum GN=atpH PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.5e-33
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. Swiss-Prot
Match: ATPH_LACSA (ATP synthase subunit c, chloroplastic OS=Lactuca sativa GN=atpH PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.5e-33
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. Swiss-Prot
Match: ATPH_LEMMI (ATP synthase subunit c, chloroplastic OS=Lemna minor GN=atpH PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.5e-33
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. TrEMBL
Match: A0A168RBZ2_SOLME (ATP synthase CF0 subunit III OS=Solanum melongena GN=atpH PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.0e-31
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. TrEMBL
Match: A0A0S2IFT3_9ROSI (AtpH OS=Cucurbita okeechobeensis GN=atpH PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.0e-31
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. TrEMBL
Match: E3T2M6_9TRAC (ATP synthase subunit c, chloroplastic OS=Isoetes flaccida GN=atpH PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.0e-31
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. TrEMBL
Match: D3WBV9_9MAGN (ATP synthase subunit c, chloroplastic OS=Meliosma aff. cuneifolia Moore 333 GN=atpH PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.0e-31
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. TrEMBL
Match: H2F562_9ASPA (ATP synthase subunit c, chloroplastic OS=Triteleia hyacinthina GN=atpH PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.0e-31
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. TAIR10
Match: ATCG00140.1 (ATCG00140.1 ATP synthase subunit C family protein)

HSP 1 Score: 141.0 bits (354), Expect = 3.3e-34
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPL+SAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. NCBI nr
Match: gi|927371887|ref|YP_009164185.1| (ATP synthase CF0 subunit III (chloroplast) [Viscum minimum])

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-31
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. NCBI nr
Match: gi|757609166|ref|WP_042854983.1| (ATP F0F1 synthase subunit C [Staphylococcus aureus])

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-31
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. NCBI nr
Match: gi|953244968|ref|YP_009180095.1| (ATP synthase CF0 subunit III (chloroplast) [Polygonatum cyrtonema])

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-31
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 2  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 61

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 62 EALTIYGLVVALALLFANPFV 82

BLAST of CmoCh04G020730 vs. NCBI nr
Match: gi|546352760|gb|AGW96663.1| (ATP synthase CF0 subunit III (chloroplast) [Argyreia nervosa])

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-31
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
          MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFANPFV 82
          EALTIYGLVVALALLFANPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

BLAST of CmoCh04G020730 vs. NCBI nr
Match: gi|944542073|ref|YP_009175992.1| (ATP synthase CF0 subunit III (chloroplast) [Ficus racemosa])

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-31
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query: 1   MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60
           MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 24  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 83

Query: 61  EALTIYGLVVALALLFANPFV 82
           EALTIYGLVVALALLFANPFV
Sbjct: 84  EALTIYGLVVALALLFANPFV 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATPH_ADICA4.5e-33100.00ATP synthase subunit c, chloroplastic OS=Adiantum capillus-veneris GN=atpH PE=2 ... [more]
ATPH_ILLOL4.5e-33100.00ATP synthase subunit c, chloroplastic OS=Illicium oligandrum GN=atpH PE=3 SV=1[more]
ATPH_JASNU4.5e-33100.00ATP synthase subunit c, chloroplastic OS=Jasminum nudiflorum GN=atpH PE=3 SV=1[more]
ATPH_LACSA4.5e-33100.00ATP synthase subunit c, chloroplastic OS=Lactuca sativa GN=atpH PE=3 SV=1[more]
ATPH_LEMMI4.5e-33100.00ATP synthase subunit c, chloroplastic OS=Lemna minor GN=atpH PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A168RBZ2_SOLME5.0e-31100.00ATP synthase CF0 subunit III OS=Solanum melongena GN=atpH PE=4 SV=1[more]
A0A0S2IFT3_9ROSI5.0e-31100.00AtpH OS=Cucurbita okeechobeensis GN=atpH PE=3 SV=1[more]
E3T2M6_9TRAC5.0e-31100.00ATP synthase subunit c, chloroplastic OS=Isoetes flaccida GN=atpH PE=3 SV=1[more]
D3WBV9_9MAGN5.0e-31100.00ATP synthase subunit c, chloroplastic OS=Meliosma aff. cuneifolia Moore 333 GN=a... [more]
H2F562_9ASPA5.0e-31100.00ATP synthase subunit c, chloroplastic OS=Triteleia hyacinthina GN=atpH PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00140.13.3e-3498.77ATCG00140.1 ATP synthase subunit C family protein[more]
Match NameE-valueIdentityDescription
gi|927371887|ref|YP_009164185.1|7.2e-31100.00ATP synthase CF0 subunit III (chloroplast) [Viscum minimum][more]
gi|757609166|ref|WP_042854983.1|7.2e-31100.00ATP F0F1 synthase subunit C [Staphylococcus aureus][more]
gi|953244968|ref|YP_009180095.1|7.2e-31100.00ATP synthase CF0 subunit III (chloroplast) [Polygonatum cyrtonema][more]
gi|546352760|gb|AGW96663.1|7.2e-31100.00ATP synthase CF0 subunit III (chloroplast) [Argyreia nervosa][more]
gi|944542073|ref|YP_009175992.1|7.2e-31100.00ATP synthase CF0 subunit III (chloroplast) [Ficus racemosa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000454ATP_synth_F0_csu
IPR002379ATPase_proteolipid_c-like_dom
IPR005953ATP_synth_csu_bac/chlpt
IPR020537ATP_synth_F0_csu_DDCD_BS
Vocabulary: Cellular Component
TermDefinition
GO:0045263proton-transporting ATP synthase complex, coupling factor F(o)
GO:0033177proton-transporting two-sector ATPase complex, proton-transporting domain
Vocabulary: Molecular Function
TermDefinition
GO:0015078hydrogen ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
GO:0015991ATP hydrolysis coupled proton transport
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0042170 plastid membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity
molecular_function GO:0008289 lipid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020730.1CmoCh04G020730.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000454ATPase, F0 complex, subunit CPRINTSPR00124ATPASECcoord: 33..48
score: 1.6E-23coord: 50..75
score: 1.6E-23coord: 12..31
score: 1.6
IPR000454ATPase, F0 complex, subunit CGENE3DG3DSA:1.20.20.10coord: 3..78
score: 1.8
IPR002379V-ATPase proteolipid subunit C-like domainPFAMPF00137ATP-synt_Ccoord: 11..73
score: 4.7
IPR002379V-ATPase proteolipid subunit C-like domainunknownSSF81333F1F0 ATP synthase subunit Ccoord: 3..79
score: 1.96
IPR005953ATPase, F0 complex, subunit C, bacterial/chloroplastTIGRFAMsTIGR01260TIGR01260coord: 20..77
score: 1.2
IPR020537ATPase, F0 complex, subunit C, DCCD-binding sitePROSITEPS00605ATPASE_Ccoord: 40..61
scor
NoneNo IPR availableHAMAPMF_01396ATP_synth_c_bactcoord: 9..77
score: 18
NoneNo IPR availablePANTHERPTHR10031ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIALcoord: 1..78
score: 8.7

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None