CmoCh04G020720 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020720
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA-directed RNA polymerase beta'' subunit
LocationCmo_Chr04 : 11858128 .. 11859732 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTAGATCAAATAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCCTCTCCGTAAAGTGTCTTTAATTCCATTACTTGCCTGCCCCTTCACCGGGTACGATTTCGTGGGTGAAGCCCTGAGACCCGTAGGGCGAAGAGGCGAATCATCGTGGTTCTAGGATGAATCTAAGGTTCTAAGATGAAGAAATCTCTTATCCCATGGGAATAAAGTCATGATTCAACGAGATAGATCCTTGTTCTCCTGCTTGCTTTGTTGGCTTAACTGCTCTCTCTCTCTGCCTTGCCTGTTCTTTCTGTTCATTCTTCCTGCTTGCTGTCTGAATCCTTTTCCTGCCTGCGTAACCTGAATCTTCTCTGTCTGAGTTGTAAGTCTTTGTTTGATTTCAGGTAGACTCCGGAAGAAGAAGAGAATGTATTGTATACCTTTCATCTCACTTCCAATGTATTGCTCCGTTAGGCTTTCGCCCATTGCAGAAAATTCCCTACTGCTGCCTCCCATAGGAGTCTGGGCGGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCAAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAATAGGCTGATCTTCCCCAAGAGCTCACATCGACGAGAAGGTTTGGCACCTCGATATCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACATGAGCTGGGTTCAGAACATCGTGAGACAGTTCTGTCCATATCCGGTGTGGGCATTAGAGCATTGAGAGGACCTTTTTCATTCTATAAATAAAGGTGAAGAAGCTCAGGGAAGGGAATTCTTTCGTTTTCACTACTCTCATCTTGTCTTGCTTTACCGACAGGTGTTCAGGAGCGAATGAGCTTGGCATCAGGGAGAGGAGGGAAATCTGGGTTCAGGGTAAGGAGCTAGCTTTAGGGAATATAAGGGGAAGTCACTTCTCTTTCTTGACTTCCTTAATGCAATAACTTCCAGTCAGGGTTTCATTCAGTAGCTCCGGCAATGGAATTGCTTTACCGACTGAAATGGCCAATAGGGAATATCGGGCCAGAAGTAGCTCAGGGAATTGTTCATTTGCTTCTCTGTCTTTCCTTCCTATTCCGGAGAAAGAAGAGAAAGAGGTTACGGCCGGAGTTCAGTTCGTTCATTCGCTGA

mRNA sequence

ATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTAGATCAAATAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGCTGATCTTCCCCAAGAGCTCACATCGACGAGAAGGTTTGGCACCTCGATATCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACATGAGCTGGGTTCAGAACATCGTGAGACAGTTCTGTCCATATCCGGTGTTCAGGAGCGAATGAGCTTGGCATCAGGGAGAGGAGGGAAATCTGGGTTCAGGTCAGGGTTTCATTCAGTAGCTCCGGCAATGGAATTGCTTTACCGACTGAAATGGCCAATAGGGAATATCGGGCCAGAAGTAGCTCAGGGAATTGTTCATTTGCTTCTCTGTCTTTCCTTCCTATTCCGGAGAAAGAAGAGAAAGAGGTTACGGCCGGAGTTCAGTTCGTTCATTCGCTGA

Coding sequence (CDS)

ATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTAGATCAAATAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGCTGATCTTCCCCAAGAGCTCACATCGACGAGAAGGTTTGGCACCTCGATATCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACATGAGCTGGGTTCAGAACATCGTGAGACAGTTCTGTCCATATCCGGTGTTCAGGAGCGAATGAGCTTGGCATCAGGGAGAGGAGGGAAATCTGGGTTCAGGTCAGGGTTTCATTCAGTAGCTCCGGCAATGGAATTGCTTTACCGACTGAAATGGCCAATAGGGAATATCGGGCCAGAAGTAGCTCAGGGAATTGTTCATTTGCTTCTCTGTCTTTCCTTCCTATTCCGGAGAAAGAAGAGAAAGAGGTTACGGCCGGAGTTCAGTTCGTTCATTCGCTGA
Homology
[Close]
BLAST of CmoCh04G020720 vs. Swiss-Prot
Match: RPOC2_CUCSA (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.0e-84
Identity = 159/184 (86.41%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

[Close]
BLAST of CmoCh04G020720 vs. Swiss-Prot
Match: RPOC2_DRANE (DNA-directed RNA polymerase subunit beta'' OS=Draba nemorosa GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 6.7e-84
Identity = 157/184 (85.33%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVH+MSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 121 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

[Close]
BLAST of CmoCh04G020720 vs. Swiss-Prot
Match: RPOC2_AETCO (DNA-directed RNA polymerase subunit beta'' OS=Aethionema cordifolium GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 6.7e-84
Identity = 157/184 (85.33%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVH+MSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 121 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

[Close]
BLAST of CmoCh04G020720 vs. Swiss-Prot
Match: RPOC2_ARAHI (DNA-directed RNA polymerase subunit beta'' OS=Arabis hirsuta GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 6.7e-84
Identity = 157/184 (85.33%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVH+MSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 121 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

[Close]
BLAST of CmoCh04G020720 vs. Swiss-Prot
Match: RPOC2_LEPVR (DNA-directed RNA polymerase subunit beta'' OS=Lepidium virginicum GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 6.7e-84
Identity = 157/184 (85.33%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVH+MSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 121 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

[Close]
BLAST of CmoCh04G020720 vs. TrEMBL
Match: A0A0S2IH42_CUCPE (DNA-directed RNA polymerase subunit OS=Cucurbita pepo var. ozarkana GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 6.8e-83
Identity = 160/184 (86.96%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

[Close]
BLAST of CmoCh04G020720 vs. TrEMBL
Match: A0A0S2IFJ4_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita okeechobeensis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 6.8e-83
Identity = 160/184 (86.96%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

[Close]
BLAST of CmoCh04G020720 vs. TrEMBL
Match: A0A0S2IFH3_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita foetidissima GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 6.8e-83
Identity = 160/184 (86.96%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

[Close]
BLAST of CmoCh04G020720 vs. TrEMBL
Match: A0A0S2IEZ1_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita lundelliana GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 6.8e-83
Identity = 160/184 (86.96%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

[Close]
BLAST of CmoCh04G020720 vs. TrEMBL
Match: A0A0S2IFZ6_CUCPE (DNA-directed RNA polymerase subunit OS=Cucurbita pepo subsp. fraterna GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 6.8e-83
Identity = 160/184 (86.96%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

[Close]
BLAST of CmoCh04G020720 vs. TAIR10
Match: ATCG00170.1 (ATCG00170.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-84
Identity = 156/184 (84.78%), Postives = 165/184 (89.67%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61  DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVH+MSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 121 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180

[Close]
BLAST of CmoCh04G020720 vs. NCBI nr
Match: gi|952955219|gb|ALO22570.1| (RpoC2 (plastid) [Cucurbita pepo subsp. fraterna])

HSP 1 Score: 315.5 bits (807), Expect = 9.7e-83
Identity = 160/184 (86.96%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

[Close]
BLAST of CmoCh04G020720 vs. NCBI nr
Match: gi|952955030|gb|ALO22384.1| (RpoC2 (plastid) [Cucurbita moschata])

HSP 1 Score: 315.5 bits (807), Expect = 9.7e-83
Identity = 160/184 (86.96%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

[Close]
BLAST of CmoCh04G020720 vs. NCBI nr
Match: gi|952954354|gb|ALO21718.1| (RpoC2 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 315.5 bits (807), Expect = 9.7e-83
Identity = 160/184 (86.96%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

[Close]
BLAST of CmoCh04G020720 vs. NCBI nr
Match: gi|952954561|gb|ALO21922.1| (RpoC2 (plastid) [Cucurbita cordata])

HSP 1 Score: 315.5 bits (807), Expect = 9.7e-83
Identity = 160/184 (86.96%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

[Close]
BLAST of CmoCh04G020720 vs. NCBI nr
Match: gi|952954722|gb|ALO22081.1| (RpoC2 (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 315.5 bits (807), Expect = 9.7e-83
Identity = 160/184 (86.96%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 60
           MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID
Sbjct: 5   MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGID 64

Query: 61  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
           DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65  DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124

Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL-------MLIFPKSSHRREGLAPRYRLF 178
           MTDPFNPVHIMSFSGARGNASQVHQLVGMRGL       M+  P  S+ REGL+    + 
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184

The following BLAST results are available for this feature:
BLAST of CmoCh04G020720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOC2_CUCSA1.0e-8486.41DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1[more]
RPOC2_DRANE6.7e-8485.33DNA-directed RNA polymerase subunit beta'' OS=Draba nemorosa GN=rpoC2 PE=3 SV=1[more]
RPOC2_AETCO6.7e-8485.33DNA-directed RNA polymerase subunit beta'' OS=Aethionema cordifolium GN=rpoC2 PE... [more]
RPOC2_ARAHI6.7e-8485.33DNA-directed RNA polymerase subunit beta'' OS=Arabis hirsuta GN=rpoC2 PE=3 SV=1[more]
RPOC2_LEPVR6.7e-8485.33DNA-directed RNA polymerase subunit beta'' OS=Lepidium virginicum GN=rpoC2 PE=3 ... [more]
BLAST of CmoCh04G020720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IH42_CUCPE6.8e-8386.96DNA-directed RNA polymerase subunit OS=Cucurbita pepo var. ozarkana GN=rpoC2 PE=... [more]
A0A0S2IFJ4_9ROSI6.8e-8386.96DNA-directed RNA polymerase subunit OS=Cucurbita okeechobeensis GN=rpoC2 PE=3 SV... [more]
A0A0S2IFH3_9ROSI6.8e-8386.96DNA-directed RNA polymerase subunit OS=Cucurbita foetidissima GN=rpoC2 PE=3 SV=1[more]
A0A0S2IEZ1_9ROSI6.8e-8386.96DNA-directed RNA polymerase subunit OS=Cucurbita lundelliana GN=rpoC2 PE=3 SV=1[more]
A0A0S2IFZ6_CUCPE6.8e-8386.96DNA-directed RNA polymerase subunit OS=Cucurbita pepo subsp. fraterna GN=rpoC2 P... [more]
BLAST of CmoCh04G020720 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00170.11.9e-8484.78ATCG00170.1 DNA-directed RNA polymerase family protein[more]
BLAST of CmoCh04G020720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|952955219|gb|ALO22570.1|9.7e-8386.96RpoC2 (plastid) [Cucurbita pepo subsp. fraterna][more]
gi|952955030|gb|ALO22384.1|9.7e-8386.96RpoC2 (plastid) [Cucurbita moschata][more]
gi|952954354|gb|ALO21718.1|9.7e-8386.96RpoC2 (plastid) [Cucurbita argyrosperma][more]
gi|952954561|gb|ALO21922.1|9.7e-8386.96RpoC2 (plastid) [Cucurbita cordata][more]
gi|952954722|gb|ALO22081.1|9.7e-8386.96RpoC2 (plastid) [Cucurbita ecuadorensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007066RNA_pol_Rpb1_3
IPR007083RNA_pol_Rpb1_4
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020720.1CmoCh04G020720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 10..62
score: 8.
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 95..155
score: 5.6
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..153
score: 1.0E
NoneNo IPR availablePANTHERPTHR19376:SF38DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''coord: 1..153
score: 1.0E
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 9..155
score: 4.35

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020720Watermelon (97103) v2cmowmbB699
CmoCh04G020720Wax gourdcmowgoB0902
CmoCh04G020720Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G020720Cucurbita maxima (Rimu)cmacmoB741
CmoCh04G020720Watermelon (Charleston Gray)cmowcgB623
CmoCh04G020720Watermelon (97103) v1cmowmB733
CmoCh04G020720Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020720Cucurbita pepo (Zucchini)cmocpeB680
CmoCh04G020720Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G020720Bottle gourd (USVL1VR-Ls)cmolsiB623