CmoCh04G020700 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020700
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
LocationCmo_Chr04 : 11819547 .. 11828730 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGATCCTGAACCTTTATTACCATCAGTTATTGCATTAAGGTAAGGAAGGAAAGACGAAACTCAAAATGAATGAGACTTTACAGTGTAAGGGAGAATCAAACTTAACTGCTCGATATTCCATATTTTTAGGGTCATTGAACTGTAAACTCATTCGCCTCTCCCTATTTTTAGGGCCATTTCAAAGGTAATGAGGAAGAAAGGAGAAAGAGCTGTTCAGTCTCTCTCTTTCTTGCTTGCTCGCTCAGGCTCCTCTTTCTTGCTTGCTTGCTTGAACTCCTTCCCCTTCACCTTGGCTTCTCTCCTGACCCTATTATTTCTTCACTGTAAACTAAGACTCGAGATGAATTAGACTGAACTACTTCAGGAACCTTCTTTCACTCCTCTCCCTTGAACAAACTGTAAACAAAGACTCAACTCAAGATTCATTCGAGTTCACTCCTGAACCTCGATTCCTTGTAAACAAATATGAAAGAGTTTACGAACTTCACTCCGTCTGAAACCTATGGATTCTTTCTCCTTCCCCGGAACCTCTCCTGATGTTATTGTGAGTTATTACAAGGAAGTGATTGTTGGCCTCCCCCTATTTTTAGGGCCAGTTTTTAGGTAACGAGGAAGTCAAGATGAAACAAGAATGAGATTGATTCGCCTCTCCCTATTTTTTCCTTCATTGAACTCAGTAAAAGACAAAGAGAAAGGAAAGCCGCTAATGAATTTACTCTCTCTCCCGGATTGAACTGTCAAAGAAGAAAGCTCAAACCTTTTCCTTCTTTCTGTAGGTCTGTTTGCTCCTTCCCCTACATTGGATTGATTTCACTCTTTGACTTAACTGTAACAAAGATTAATGAGACTTAACTCCTTTCCTTGTACAGTTATTGCATTAAGGAAGTCAAGACGAAAGACAAAACCTAAACCGAAACCCTTCGACTTATTGAAAGAGTTTACAGTGTTTGAAAGAATAAATGAATTAGCTGCTTTTCAAGACACAACGAAAGACAAGATGAAACGAAAGCAGAATGAGATGGAACGGTGAAAGAATAAAGGGAGACGAAACAAAGACAAAGATTCCTACTTCGTTCACTCCTGATTCTGTAAAGACCAATAATTCTAAAATGCTACCCTCTCCCTAGCGGTCGAGTGGCTTCGCCCCTCTGTCTATTTTTTGTTTATGGCTATTTTTGAGCTAAAAGAGTGAAAGCAAGCAAGCCAGTTTCTTCCAACCCAACAAGCCCGAAAGAAAGGAAAGCCGAAACTCCTTATTCATTTATGATCCTGTAAAGACCATTTATTAATTAATTCTATCATCTGTCTATTTTTTGGACTATTTTTTAGGTAAAAGAGTTCTTTCGGCCCTTGCTCAAGACTAAAGGCAGACTCAAGAAAGACAAGATTCATTCGACTTAACTCCTTGTTTCGTTCGAGTTCATTATTCTTTCACTGTAAAGAAATTGAAAATGAAAGAAAGATTTGCTCCTCTTTATCTTAGCCTTTCTAGCTTCTCTCCTTCAATCCTTCTGGAACTCCCGGGTTGGTTACCTCCTCTCTGTCTTAGCTTAGCCTTTCTAGCTTTGTTTGTTTTATTCCCTTCTTTTCCTCTTTAGTACCATTTATTTGCAAATTCGAAAATCTCTTTCATTAGCTTGGCAGGGCAATTTTGAAGCATGGGTACAAGACCCTTTACATGTAAGACCTATTGCTCATGCAATTTGGGATCCTCTTTAGTACCATTTATTTGCAAATTCTATCCTTTGTCTATTTTTTTTTTTTTTTTGGCTATTTTCTTATCCTTCCCTTATTTTTTAGGCTATTTTTTAAGGTAAAAGAGGCCAAAATCCCTGATTTCCCTTAAAAGAGTTCCAAATCGGCTAAATGGGACTGATTTAACCCTTTTTCGTGTTAGGACCATTAATGAAAAAATTCTATCCTCTCTCTAGCGGTCGAGTGGCTCCGCCCCTCTGTCTATTTTTTGTTTATGGCTATTTTAGAGGTAATGTTAAAGGAAGTCAAGAGACTGAACTCAATCACTACTTCACCTCTACAACTATCAATTATAACACATGCGGAAGCAATTTGGATCTTAGGCACTTTTAGAACATCAATTATAGTAAATAACTAGCATGTTCATAAGTATTAAAACTTTATGAGTTTAAATACTAACCTTTTGTAGTTCAAACTCCTTTTTCCTCATGAACCGGTTTCGAACCACCACTAGTGTCTTCTCCACTATCCTCCGACCTTAGAACGGGATTGTGGAATCCGGTGAGTGACTAAACTTGGGAGGGATTTTGTATATGTGAAGAGAGTGTTTCTGAGAGGTTTTTCTCAAGGTTTTTCACCAAGAAGAAGAAGACCTTCCATGTACCATGATCACTCTATTTAAAGAGTCATGTTTGCATGTTCATGCAAATTTGAGATCACCAAATTTTGACACTTAAAATTCCACTCAAATGTTTGGGATTATGTGGCAAGCATGCATGTTTGAGTTAACCAAATTTTGACACTCAAAATTCCACTCAAACTTGTGGGGTTTATTTGGCAAGCATGCAAGTTTGAGTTAACCAAATTTTGACACCTCAAAATTCCACTAACATGGATTTTTCCATTAAATGAAGTCAACATTTTGACTTTCTTCATTTTAATTCAACCATTAATTTGAATAATGAATTTCAAATTAGAGTAACATTAAATGATTAATTAAACTATTTAATTAATATTTAATATTAATTCAAATGCCAATTCCAATCAATTCCGATACATAATTGATTAAGATATTTAAATCTTACTTAAATATCTCAGATTCTCTCTTCTTGATTATAATTCATAAATAAAACAAAAATGCGGTTAAATATATTGTATATATGTAGCGCATATTCCCTAATTTGAATTCAAACACTTCGAACTCACTCGTCACACTGTTCTATGGTTTAGTTTGATATGAGCTAGCAGAGAGACCTAATGGACCTATAGATCATGGGCTCCAACGATCCAAGATTAACCAGCTAAACTCATTAACCTTGTTAACCAACATTCGTTAACTACTAGGACACTCCACTATAGCCTAGTAGTTGCACTCCCCTCACTATAGATATATTTCTGTCCATTTGATATAACCATGATTAGTAAGTCGATCCTTCACAGGTTGTTCGTAACTAGAGCTGGGTCAAATTACCGTTTTACCCCTGAAGTTACCTCTTGTTCCTTATGTCTCACTGATCCTCTAATGAACAATTGGTTTGTGGTCCAACCAGTAAACCGAATCCCTCTTAGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGACCTGGAGTCAGTGCTTAAGGGAACTACCTCTCTTCTATTCCTAAAAGTGGGTAGGAGCGAATTCCATCTTGCACCCCATGTCCCCAGCCATTCACCTAGTCTTACCCCTGAAATGGGAGGCCTATTGAGTCAGCGAACTAGAGCCACTCTCAGTCATGCAAATCTAAGGATAATTCCGAATAAACAGGAGTTCATGGTTAGCTCAGGATTAAAACCGAGTTACCTAGGTTATCGAATGAAAAGAAAATCAGTCTCAAAAGTAAACGACATTATAAAGTGAGAGTGGTTTTCTTCATGGTCCGATCTTATGCAATACTCATTGCATAGGACGCCCCCACTCACATGTCTTCACATGTACAATTTAGTGATCACATTGTTTATATCATATACAAAAGTGGGCTGCATCCATAGTGTCCCAGAATAAGGTACTCAGCCTTATCTAAGTACTATAGATCATTTTGACTTTATCTTATCACTGCTTCTTTAAGAAAGTAGTTTATGGATTTAATACATTTCATTTGCTTTCTATTCCTACTAATTTCCTTCTAATATTTATGTGAGTGAAGCATGCAGATTTGATCAAAACATTTGTTAGAAAAAACTATGTTTAAATTCATAAATTATGAAAAGTCAAACGGTCAATTTGACTTATTCTTTGTAGAGATTAAAGGGAATCAGGAATAAATCCCGTCCACAAATGTCTCGAATAAATCTCGTCCACAAACATCTTTTATCGGGAGACTATAAATACCCACAATATGTTATGTAAAAGGCAGATTCGTGGATGAATGTAATTCAGATCTCAAATTGAGACGTTTTCCTTAGAAATTCGAGCATCATATTTTCCATTTCTAAGTTTCAAGCAATTCTTGTGGTAGAATTGCACCCGAGACATCAAGCCTTGATCAAGTTAGATTGTGAAGTGACTCAATTTAGAACAAGGTTTCCAAATCTTGCTTCTAGATCTTCGATCGTAAGAGGTAATCTAATTCTAGCCTTATCTCTTGGTTGATCCAAATTTCGTATAAGGAGGTGTTAATTACTTTGATTCAAGGGTTCTTACTTCAACATAAGCTTGGATCGTTGGGCTGAGGATTAGGGTTGCCTTATCATATACGATATGTATCTGTGTACTCGAACTCCTTCTAACAACCTATGCATTTTGTTATCATTTCGAATTGGATGATCCATTAATGCAACTGACAGAGGATTATAAATGGATCTCTTTTTTGGATTTTGACTGTAGATTGGGAATGGCCTTTCCATAGGACCTATTTTACTGATGGGGTTTATCACCACTTTAACTACTTTAGTGGCTTGGCCAGTTACTCGAGATTCCGGATTCTTCCATTTTCTAATGTTAGGAATGTATAGCGGTCAAATAGGATAATTTTCTGCTCGAGACCTTTGACTATTTTTTCTCATGTGGGAGTTAGAATGAATTCCCGTTTATCTACTTCTAATGATGTGGGGAGGAAAGAAACGGTTGTATTCAGCTCCAAAGTGGATTTTGTACACTGCAGGAGGTTCCATTCATTTGTTAATGGGATTTCTGGGTATCGGTTTATATGGTTCTAACTAATGAACCAACTTTTTATTTGGAAACATCAGCTAATCAATCGTATCCTATAGCACTGGAAATAATATTCTATCTATATCGGATTTCTTAATTGCTTTTGCTATCAAATCATCGATTATACCCTATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTAGCTGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATAGATTACCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCCCCCCCCCCCGCCCATTCTCTTTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGTAGCTTCAACATCTTCGGGTCAACGCAATTTCAAAACAAAGAATAGCTTATTCCTCCGTCTCTCATATATATGGGTTTCTCATTATAGGAATTTGTTCTATATATAAGCGGGGACTGAATGCAGCTATTTTATGAATAATCTCTCATGGATTTATTGGCGCTGCACTTTTCTTTTTTTCTTAGCGGGAACAAGTTATGATAGAATACGTCTTGTTTATCTCGATGAAATGGGCGAAATGGCTATTCCAATTTCAAAAGGATTCACGACTTTGAGTATCTTATCGATGGGGCTTTCCTTGCATTGCCGGGTATGAGCAGTTTTGTTGCAGAATTCATAGTCTTGGAATAATTACCCGCCAAAAATCTCTTGTAATGAGAAAAATACTAATTACTTTGGTACATGGCAATTGGAATCATATTAACTCCCATTTATTTATTATCTATGTTACGCCAGAAGTTCTATGGATACAAGCTTTTTAATGTTCAAAATTCTTCTTGATTCGGGACAACGAGAGTTCTTTGTTGCGATCTCTATCCTTATACCTGTAATAGGTATTGGTATTTATCCAGATTTGGTTTTCTCACTATCTCAGTTGACAAATTAGTCTTTTTTCTTAATCTTCAGTGAAATAAAAAAATGAATTGGACTTCCATATACATTTGGATTTTGTGAGAAGCAAGTAATGTGGTGATTCAAAGGGTTCTCGATGTCTTACACACTGTTTTCTTATCTGGACTCTCCCGTCTTTGTCTTCGTCAGACCCTTTCTTTCATTCATTCAATTAGATGTTAATGTAAATGAACCATAAGTAGCCCTATCCCTAATAGATTGACCCCAAACAAAATAGCATATCCAGATTATAAGAAAACCCATAGAGCAATTATGGTCCAAGTAATAAATGCCCAAGTTTCTTTTGGATCCCAATTCCAATACGATCCCCATGTCTCATTAGCCCATACGGCCCCTAAAAGAATACCTATGCTTAAAAAGAGAAACCCTAGACTAAGTTCTCTTTCTTCATGTATTGGAATCAAAAGGAAATAACCCATTTAATAAATGATGATTGTTTTACCAATAATTCTTATAGATAGAGTTTGGAAATGTAATCACTCTTACTTGCATCATTAACCAATGAGATTGGAGAGCAGGAACTAATAGTGGGAATTAATGCATTTCAGTTAAAAAACCTGTGAAGTAGCAAACCCTCCGGGAAAAATAGTACTTGGTGCAGTTATTGCACTTAAATAGTTTAATAATGGAGAAACCCCAGGAAAGAAATAGTAATGTTTCATATAAATCACTTAATGGTAAATGCCTCAAATAAATCCAACGAGTAACTAAGAATCCTGTTATACAGAGAAAAAAGTAGCTATCATGCCCTTCCTTTTCTGACGAAGTATAGAGTCCTAGAGTTTCATCGACTAATAAGGTTATCAAATTCATTGTTTAATGATTCGTAATGAATTTAATACAAATTAATCTGATTTTACTGGATCTACTTGTAGACTGGCTTTTTGATTGATACCAAAATGAAATAGTATTTTTTTCGTCTAATTATTCCTTCTTGCTCTATAGCGGAAAATTAGTGTAATGTACATACTATCTAATAATAATAAAGAAAATTAGCAGTTTCTATATTGGATATTCTAATTTGTTATTAACTGATTAATAAGTGTCTACCCTGCTGGAATTTGCAAAGCTAGAGGTTCTTCTAGAACCCTTGCAAAACGTTCACAGAGAAAGCTAACTTAACGGATTGATTCGAACCAAGAGCTAGTTAGAAGATGAATGACTCTTAGATCGAACTTGGAATCTATGATGGTCACACTTGGATACCAAGACAATTCACTCTAGAATTAGCTTGATCAAAACTAATTCAATGAATCGCTTTAAACATCAAACCTAAAGCAAGGTTTGAAAAAGAAGAACACCAAAAAGGTATCAAGAAAGTTTTGTTTGTATTCAACAATTCATCTTAAAATTGAATATTACATGCCTTTAAATAGACCCACAAGATAACCCTAACATAATAAAGTTCAACCACCAACTACAAATCACTAATAAATGCTATTAAATACAAATCAAAGAAAATAAGGCATTCATAAATTGTCTTAATTGGTAATTCAATTACCAATGTCAAGTCTTCTAATCACTTTCCGATGTCAGCCACTCCATTATTTTCTTGATTTGATACTTGAATCTTCTTTGTATTACTTCTTGTAATTGCTTATTTGGGTACATGGAAGTGATTAGTTATTGGATTCATATCACTAATCCTTTTGAAAAGAGATAAGAGCTGGTGAATCATTAAAATTAATTAGGAATTCAATATCATGGATGATACCTTTCATCTCACTTCCAATTCCTATCTGACTTAATAGGAGTGAGACTTCTACTTTCTTTTTCCGACCGCAACCAAAACTCTTCGACGTATGTACTCTTTTCCGAGTATTTGATTGTGAAGTATAGTTATGTTTCAGTTTATCTATCTATTGACCAACTAAATAGTAGTTATATTTAATATATGGATGGTCTTGGACTATCAATAATGCTTTTTCTTTAGAGTGGGGCTACTTGATCGATCCACTTACTTGTATTATGTCCATATTAAGAACGATGGAATTATGGTTCTTATCTTATTTATAGTGACAATTATATGTCTCACGATCAAGGATATTTGAGAGCGTATATAAGTTTGTTCAATAAGTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATCCGTCTTTCTCTTTTTTGGGAATTGGTTGGAATGTGGTCTTATCTATTAATAGGGTTTTGGTTCACCCCACCTACTGCTGCAAATGCTTGTCAAAAGGCATTTGTAACTAATTGCCTGGGGGATTTATTTGGGTTTATTTATTATTAGGGATTTGAGGTCTTTATTGGATAACAGGGTGTTTGCATTTGGGGATTGATTTATAATAATGAGGTGACTTTCTTATTTGTTACTTTGTGACCGTCTTTCCTATTAGTTGCAGGTGCAGTTGCTAAATCCGCTCAATTTCCTCTTCATCTATGGTTACCTGATGCTATGGAGGGCCCTACCCAGATTTCGGCTCTTATACATGTTGCTACGATGGTAGGGGAAGTTTTCTTGTAGCTCGGCTTCTTCCTTTATAGTAATACCTTACATCATGAATTTAATAGCTGGGGATAATAACAGTACTATTTGGAGCTACTTTAGCTCTTGCTCAAAAAGAGATTCAGAGAAGTTTAGCCAGCCTATTCTACAATGTCTCAATTTGGTTATATATATGTATGATTGATGTTTGTTAGCTACTTTGGGTATAGGGTCTTATCAAGCTGCTCTTTATTTCATTGGATTACTCATGCTTATTCTAAAGCTTTGTTGTTTTTAGGATCTGGGGCCATTCATTATTCACTCAATGGAATCGGTTGTTGGATATTCTCGAGATAAAAGTCAGAATATGGTTCTTATGGGGGTTAACCATGTGCCAATTACAACAAATGCTTTTTGATTAGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCCTGTTCCAGAGCAGGATTAACACCAGTTTATATGTTTCCTATCTACTTACTGACTTTTGAGGGACATTTAAACATTTTAAAATCGTGGAAAAACAAAGAATTCCCTCTATTCAATATCATTATGGGGTAA

mRNA sequence

ATGAATGATCCTGAACCTTTATTACCATCAGTTATTGCATTAAGTACCATTTATTTGCAAATTCGAAAATCTCTTTCATTAGCTTGGCAGGGCAATTTTGAAGCATGGGTACAAGACCCTTTACATATTGGGAATGGCCTTTCCATAGGACCTATTTTACTGATGGGGTTTATCACCACTTTAACTACTTTAGTGGCTTGGCCAGTTACTCGAGATTCCGGATTCTTCCATTTTCTAATGAGTGAGACTTCTACTTTCTTTTTCCGACCGCAACCAAAACTCTTCGACTTATATTTAATATATGGATGGTCTTGGACTATCAATAATGCTTTTTCTTTAGAGTGGGGCTACTTGATCGATCCACTTACTTGTATTATTGACAATTATATGTCTCACGATCAAGGATATTTGAGAGCGTATATAAGTTTGTTCAATAAGTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATCCGTCTTTCTCTTTTTTGGGAATTGGTTGGAATGTGGTCTTATCTATTAATAGGGTTTTGGTTCACCCCACCTACTGCTGCAAATGCTTGTGCAGTTGCTAAATCCGCTCAATTTCCTCTTCATCTATGGTTACCTGATGCTATGGAGGGCCCTACCCAGATTTCGGCTCTTATACATGTTGCTACGATGGGGAAGTTTTCTTGTAGCTCGGCTTCTTCCTTTATAGTAATACCTTACATCATGAATTTAATAGCTGGGGATAATAACAGTACTATTTGGAGCTACTTTAGCTCTTGCTCAAAAAGAGATTCAGAGAAGTTTAGCCAGCCTATTCTACAATGTCTCAATTTGGATCTGGGGCCATTCATTATTCACTCAATGGAATCGGTTGTTGGATATTCTCGAGATAAAAGTCAGAATATGGTTCTTATGGGGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCCTGTTCCAGAGCAGGATTAACACCAGTTTATATGTTTCCTATCTACTTACTGACTTTTGAGGGACATTTAAACATTTTAAAATCGTGGAAAAACAAAGAATTCCCTCTATTCAATATCATTATGGGGTAA

Coding sequence (CDS)

ATGAATGATCCTGAACCTTTATTACCATCAGTTATTGCATTAAGTACCATTTATTTGCAAATTCGAAAATCTCTTTCATTAGCTTGGCAGGGCAATTTTGAAGCATGGGTACAAGACCCTTTACATATTGGGAATGGCCTTTCCATAGGACCTATTTTACTGATGGGGTTTATCACCACTTTAACTACTTTAGTGGCTTGGCCAGTTACTCGAGATTCCGGATTCTTCCATTTTCTAATGAGTGAGACTTCTACTTTCTTTTTCCGACCGCAACCAAAACTCTTCGACTTATATTTAATATATGGATGGTCTTGGACTATCAATAATGCTTTTTCTTTAGAGTGGGGCTACTTGATCGATCCACTTACTTGTATTATTGACAATTATATGTCTCACGATCAAGGATATTTGAGAGCGTATATAAGTTTGTTCAATAAGTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATCCGTCTTTCTCTTTTTTGGGAATTGGTTGGAATGTGGTCTTATCTATTAATAGGGTTTTGGTTCACCCCACCTACTGCTGCAAATGCTTGTGCAGTTGCTAAATCCGCTCAATTTCCTCTTCATCTATGGTTACCTGATGCTATGGAGGGCCCTACCCAGATTTCGGCTCTTATACATGTTGCTACGATGGGGAAGTTTTCTTGTAGCTCGGCTTCTTCCTTTATAGTAATACCTTACATCATGAATTTAATAGCTGGGGATAATAACAGTACTATTTGGAGCTACTTTAGCTCTTGCTCAAAAAGAGATTCAGAGAAGTTTAGCCAGCCTATTCTACAATGTCTCAATTTGGATCTGGGGCCATTCATTATTCACTCAATGGAATCGGTTGTTGGATATTCTCGAGATAAAAGTCAGAATATGGTTCTTATGGGGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCCTGTTCCAGAGCAGGATTAACACCAGTTTATATGTTTCCTATCTACTTACTGACTTTTGAGGGACATTTAAACATTTTAAAATCGTGGAAAAACAAAGAATTCCCTCTATTCAATATCATTATGGGGTAA
Homology
[Close]
BLAST of CmoCh04G020700 vs. Swiss-Prot
Match: NU5C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=ndhF PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.4e-50
Identity = 128/241 (53.11%), Postives = 147/241 (61.00%), Query Frame = 1 

Query: 187 ACAVAKSAQFPLHLWLPDAMEGPTQISALIHVATM---GKFSCSS-ASSFIVIPYIMNLI 246
           A AVAKSAQFPLH+WLPDAMEGPT ISALIH ATM   G F  +     FI IPYIMNLI
Sbjct: 235 AGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIAIPYIMNLI 294

Query: 247 AGDNNSTI-WSYFSSCSKRDSEK------FSQPILQCLNLDLGPF--------------- 306
           A     T+ +    + +++D ++       SQ     L L +G +               
Sbjct: 295 ALIGIITVLFGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYQAALFHLITHAYSKA 354

Query: 307 --------IIHSMESVVGYSRDKSQNMVLMGVPFLSLCGIPPLACFWSKDEILNDSWLYS 366
                   IIHSMESVVGYS DKSQNMVLMG     L    P+    +K+  L  +    
Sbjct: 355 LLFLGSGSIIHSMESVVGYSPDKSQNMVLMG----GLTKHVPI----TKNAFLLGT---- 414

Query: 367 PIFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSRAGLTPVYMFPIYLLTFEGHLN 394
              LSLCG+PPLACFWSKDEILNDSWLYSPIFAIIACS AGLT  YMF IYLLTF+GHLN
Sbjct: 415 ---LSLCGVPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHLN 460

[Close]
BLAST of CmoCh04G020700 vs. Swiss-Prot
Match: NU5C_VITVI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Vitis vinifera GN=ndhF PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.0e-49
Identity = 130/252 (51.59%), Postives = 151/252 (59.92%), Query Frame = 1 

Query: 189 AVAKSAQFPLHLWLPDAMEGPTQISALIHVATM---GKFSCSSA-SSFIVIPYIMNLIAG 248
           AVAKSAQFPLH+WLPDAMEGPT ISALIH ATM   G F  +     FIVIPYIMNLI+ 
Sbjct: 239 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLFPLFIVIPYIMNLISL 298

Query: 249 DNNSTI-WSYFSSCSKRDSEK------FSQPILQCLNLDLGPF----------------- 308
               TI      + +++D +K       SQ     L L +G +                 
Sbjct: 299 IGIITILLGATLALAQKDIKKSLAYSTMSQLGYTMLALGMGSYRAALFHLITHAYSKALL 358

Query: 309 ------IIHSMESVVGYSRDKSQNMVLMGVPFLSLCGIPPLACFWSKDEILNDSWLYSPI 368
                 IIHSME++VGYS DKSQNMVLMG     L    P+    +K+  L  +      
Sbjct: 359 FLGSGSIIHSMEAIVGYSPDKSQNMVLMG----GLTKHVPI----TKNTFLLGT------ 418

Query: 369 FLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSRAGLTPVYMFPIYLLTFEGHLNI- 406
            LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIAC  AGLT  YMF IYLLTFEG+ N+ 
Sbjct: 419 -LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACLTAGLTAFYMFRIYLLTFEGYFNVH 475

[Close]
BLAST of CmoCh04G020700 vs. Swiss-Prot
Match: NU5C_BUXMI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Buxus microphylla GN=ndhF PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.3e-48
Identity = 127/252 (50.40%), Postives = 146/252 (57.94%), Query Frame = 1 

Query: 189 AVAKSAQFPLHLWLPDAMEGPTQISALIHVATM---GKFSCSS-ASSFIVIPYIMNLIAG 248
           AVAKSAQFPLH+WLPDAMEGPT ISALIH ATM   G F  +     F VIPYIMN+I+ 
Sbjct: 237 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFTVIPYIMNIISL 296

Query: 249 DNNSTI-WSYFSSCSKRDSEK------FSQPILQCLNLDLGPF----------------- 308
               TI      + +++D ++       SQ     L L +G +                 
Sbjct: 297 IGIITILLGATLALTQKDIKRSLAYSTMSQLGYIMLALGMGSYRAALFHLITHAYSKALL 356

Query: 309 ------IIHSMESVVGYSRDKSQNMVLMGVPFLSLCGIPPLACFWSKDEILNDSWLYSPI 368
                 IIHSMES+VGYS DKSQNM+LMG        I   A F                
Sbjct: 357 FLGSGSIIHSMESIVGYSPDKSQNMILMG-GLKKYVPITKTAFFLGT------------- 416

Query: 369 FLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSRAGLTPVYMFPIYLLTFEGHLNI- 406
            LSLCGIPPLACFWSKDEI+NDSWLYSPIFAIIACS AGLT  YMF  YLLTFEGHLN+ 
Sbjct: 417 -LSLCGIPPLACFWSKDEIINDSWLYSPIFAIIACSTAGLTAFYMFRTYLLTFEGHLNVN 473

[Close]
BLAST of CmoCh04G020700 vs. Swiss-Prot
Match: NU5C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhF PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-48
Identity = 123/241 (51.04%), Postives = 142/241 (58.92%), Query Frame = 1 

Query: 187 ACAVAKSAQFPLHLWLPDAMEGPTQISALIHVATM---GKFSCSS-ASSFIVIPYIMNLI 246
           A AVAKSAQFPLH+WLPDAMEGPT ISALIH ATM   G F  +     FI+IPYIMN I
Sbjct: 235 AGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIIIPYIMNFI 294

Query: 247 AGDNNSTI-WSYFSSCSKRDSEK------FSQPILQCLNLDLGPF--------------- 306
           +     T+      + +++D ++       SQ     L L +G +               
Sbjct: 295 SLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKA 354

Query: 307 --------IIHSMESVVGYSRDKSQNMVLMGVPFLSLCGIPPLACFWSKDEILNDSWLYS 366
                   IIHSME++VGYS DKSQNMVLMG       G+        K  +      + 
Sbjct: 355 LLFLGSGSIIHSMEAIVGYSPDKSQNMVLMG-------GL--------KKHVPITKTAFL 414

Query: 367 PIFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSRAGLTPVYMFPIYLLTFEGHLN 394
              LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACS AGLT  YMF IYLLTFEGH N
Sbjct: 415 VGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFEGHFN 460

[Close]
BLAST of CmoCh04G020700 vs. Swiss-Prot
Match: NU5C_PLAOC (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Platanus occidentalis GN=ndhF PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.0e-48
Identity = 124/239 (51.88%), Postives = 143/239 (59.83%), Query Frame = 1 

Query: 189 AVAKSAQFPLHLWLPDAMEGPTQISALIHVATM---GKFSCSSA-SSFIVIPYIMNLIAG 248
           AVAKSAQFPLH+WLPDAMEGPT ISALIH ATM   G F  +     F VIPYIMNLI+ 
Sbjct: 237 AVAKSAQFPLHIWLPDAMEGPTPISALIHAATMVAAGIFLVARLFPLFTVIPYIMNLISL 296

Query: 249 DNNSTI-WSYFSSCSKRDSEK------FSQPILQCLNLDLGPF----------------- 308
               T+      + +++D ++       SQ     L L +G +                 
Sbjct: 297 IGIITVLLGATLALAQKDIKRSLAYSTMSQLGYTMLALGMGSYRAALFHLITHAYSKALL 356

Query: 309 ------IIHSMESVVGYSRDKSQNMVLMGVPFLSLCGIPPLACFWSKDEILNDSWLYSPI 368
                 IIHSME+VVGYS +KSQNM LMG       G+   A       I   ++L    
Sbjct: 357 FLGSGSIIHSMETVVGYSPEKSQNMALMG-------GLTKYA------PITKTAFLLGT- 416

Query: 369 FLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSRAGLTPVYMFPIYLLTFEGHLNI 394
            LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACS AGLT  YMF +YLLTFEGHLN+
Sbjct: 417 -LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRMYLLTFEGHLNV 460

[Close]
BLAST of CmoCh04G020700 vs. TrEMBL
Match: Q9TLC1_9LAMI (NADH dehydrogenase subunit F OS=Clerodendrum trichotomum GN=ndhF PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.5e-64
Identity = 182/405 (44.94%), Postives = 211/405 (52.10%), Query Frame = 1 

Query: 101 YGWSWTINNAFSLEWGYLIDPLTCII---------------DNYMSHDQGYLR--AYISL 160
           Y WSWT++N FSLE+GYLIDPLT I+               DNYM+HDQGYLR  +Y+S 
Sbjct: 71  YVWSWTLDNDFSLEFGYLIDPLTSIMLMLITTVGILVLIYSDNYMAHDQGYLRFFSYMSF 130

Query: 161 FNKSMLGLVTSSNLIRLSLFW------------------------------ELVGMWSYL 220
           F+ SMLGLVTSSNLI++ +FW                                 G +  L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPTAANACQKAFVTNRFGDFGLL 190

Query: 221 L--IGF-WFTPP----------------------------TAANACAVAKSAQFPLHLWL 280
           L  +GF W T                              T   A AVAKSAQFPLH+WL
Sbjct: 191 LGILGFYWITGSFEFRDLFELLTNLIYNNDVNSPFVTLCATLLFAGAVAKSAQFPLHVWL 250

Query: 281 PDAMEGPTQISALIHVATM---GKFSCSS-ASSFIVIPYIMNLIAGDNNSTI-WSYFSSC 340
           PDAMEGPT ISALIH ATM   G F        FIVIPYIMNLIA     T+      + 
Sbjct: 251 PDAMEGPTPISALIHAATMVAAGVFLVGRLLPLFIVIPYIMNLIAVIGVITVLLGATLAL 310

Query: 341 SKRDSEK------FSQPILQCLNLDLGPF-----------------------IIHSMESV 394
           +++D ++       SQ     L L +G +                       +IHSME++
Sbjct: 311 AQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSVIHSMETI 370

[Close]
BLAST of CmoCh04G020700 vs. TrEMBL
Match: Q9MVL7_9ROSI (NADH dehydrogenase (Fragment) OS=Abutilon x hybridum GN=ndhF PE=3 SV=2)

HSP 1 Score: 252.3 bits (643), Expect = 1.0e-63
Identity = 182/410 (44.39%), Postives = 208/410 (50.73%), Query Frame = 1 

Query: 101 YGWSWTINNAFSLEWGYLIDPLTCII---------------DNYMSHDQGYLR--AYISL 160
           Y WSWTINN FS E+GY ID LT I+               DNYMSHDQGYLR  AY+SL
Sbjct: 71  YVWSWTINNGFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSL 130

Query: 161 FNKSMLGLVTSSNLIRLSLFW------------------------------ELVGMWSYL 220
           FN SMLGLVTSSNLI++ +FW                                +G +  L
Sbjct: 131 FNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLL 190

Query: 221 L--IGF-WFT---------------------PPTAANACA-------VAKSAQFPLHLWL 280
           L  +GF W T                     P      CA       VAKSAQFPLH+WL
Sbjct: 191 LXILGFYWITGSFEFQDLFEIFNNLIYNNEVPFLFVTLCASLLFTGAVAKSAQFPLHVWL 250

Query: 281 PDAMEGPTQISALIHVATM---GKFSCSS-ASSFIVIPYIMNLIAGDNNSTI-WSYFSSC 340
           PDAMEGPT ISALIH ATM   G F  +     FIVIPYIMNLI+     T+      + 
Sbjct: 251 PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLISLIGIITVLLGATLAI 310

Query: 341 SKRDSEK------FSQPILQCLNLDLGPF-----------------------IIHSMESV 394
           +++D ++       SQ     L L +G +                       IIHSME++
Sbjct: 311 AQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEAI 370

[Close]
BLAST of CmoCh04G020700 vs. TrEMBL
Match: A0A0G2R8N3_MESCR (NADH-plastoquinone oxidoreductase subunit 5 OS=Mesembryanthemum crystallinum GN=ndhF PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.0e-63
Identity = 182/402 (45.27%), Postives = 214/402 (53.23%), Query Frame = 1 

Query: 101 YGWSWTINNAFSLEWGYLIDPLTCII---------------DNYMSHDQGYLR--AYISL 160
           Y WSWTINN FSLE+GYLIDPLT I+               DNYMSHDQGYLR  AY+S 
Sbjct: 71  YVWSWTINNDFSLEFGYLIDPLTSIMLMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSF 130

Query: 161 FNKSMLGLVTSSNLIRL------------------------------SLFWELVGMWSYL 220
           FN SMLGLVTSSNLI++                              +     VG +  L
Sbjct: 131 FNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLL 190

Query: 221 L--IG-FWFTPP------------TAANACAVAKSAQFPLHLWLPDAMEGPTQISALIHV 280
           L  +G +W T                 N  AVAKSAQFPLH+WLPDAMEGPT ISALIH 
Sbjct: 191 LGILGLYWITGSFEFGDLFEIFNSLIKNNGAVAKSAQFPLHVWLPDAMEGPTPISALIHA 250

Query: 281 ATM---GKFSCSS-ASSFIVIPYIMNLIAGDNNSTI-WSYFSSCSKRDSEK------FSQ 340
           ATM   G F  +     F VI YIM +I+     T+      + +++D ++       SQ
Sbjct: 251 ATMVAAGIFLVARLLPLFTVIHYIMYVISFIGIITVLLGATLALAQKDIKRSLAYSTMSQ 310

Query: 341 PILQCLNLDLGPF-----------------------IIHSMESVVGYSRDKSQNMVLMGV 400
                L L +G +                       IIHSME++VGYS +KSQNMVLMG 
Sbjct: 311 LGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMETIVGYSPEKSQNMVLMG- 370

Query: 401 PFLSLCGIPPLACFWSKDEILNDSWLYSPIFLSLCGIPPLACFWSKDEILNDSWLYSPIF 406
               L    P+    +K   L  +       LSLCGIPPLACFWSKDEILNDSWLYSPIF
Sbjct: 371 ---GLTRHVPI----TKTAFLIGT-------LSLCGIPPLACFWSKDEILNDSWLYSPIF 430

[Close]
BLAST of CmoCh04G020700 vs. TrEMBL
Match: Q6JXD3_9ROSA (NADH dehydrogenase subunit F (Fragment) OS=Pourouma sp. gw1512 GN=ndhF PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.0e-63
Identity = 187/433 (43.19%), Postives = 220/433 (50.81%), Query Frame = 1 

Query: 73  SGFFHFLMSETSTFFFRPQPKLFDLYLIYGWSWTINNAFSLEWGYLIDPLTCII------ 132
           S  F  ++   ST+ F  Q     +YL   WSWTINN FSLE+GYL+DPLT I+      
Sbjct: 6   SVLFLSIVMSFSTYLFIQQKNNPSIYLSI-WSWTINNDFSLEFGYLVDPLTSIMLILITT 65

Query: 133 ---------DNYMSHDQGYLR--AYISLFNKSMLGLVTSSNLIRL--------------- 192
                    DNYMSHDQGYLR  AY+S FN SMLGLVTSSNLI++               
Sbjct: 66  VGIMVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLI 125

Query: 193 ---------------SLFWELVGMWSYLL--IGF-WFTPPTA------------------ 252
                          +     VG +  LL  +GF W T                      
Sbjct: 126 GFWFTRPTAANSCQKAFVTNRVGDFGLLLGILGFYWITGSLEFRDLFEIFNNLVYNNEVN 185

Query: 253 ---ANACA-------VAKSAQFPLHLWLPDAMEGPTQISALIHVATM---GKFSCSS-AS 312
              A +CA       +AKSAQFPLH+WLPDAMEGPT ISALIH ATM   G F  +    
Sbjct: 186 FLFATSCAFLLFSGAIAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLP 245

Query: 313 SFIVIPYIMNLIAGDNNST-IWSYFSSCSKRDSEK------FSQPILQCLNLDLGPF--- 372
             IV+PYIMNLIA     T +     + +++D ++       SQ     L L +G +   
Sbjct: 246 LLIVLPYIMNLIALIGIITLLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAA 305

Query: 373 --------------------IIHSMESVVGYSRDKSQNMVLMGVPFLSLCGIPPLACFWS 394
                               IIHSME++VGYS DKSQN+V MG       G+        
Sbjct: 306 LFHLITHAYSKALLFLGSGSIIHSMETIVGYSPDKSQNLVFMG-------GLR------K 365

[Close]
BLAST of CmoCh04G020700 vs. TrEMBL
Match: O03659_9LAMI (NADH dehydrogenase (Fragment) OS=Tetraclea coulteri GN=ndhF PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.6e-63
Identity = 180/405 (44.44%), Postives = 209/405 (51.60%), Query Frame = 1 

Query: 101 YGWSWTINNAFSLEWGYLIDPLTCII---------------DNYMSHDQGYLR--AYISL 160
           Y WSWT++N FSLE+GYLIDPLT I+               DNYM+HDQGYLR  +Y+S 
Sbjct: 61  YVWSWTLDNDFSLEFGYLIDPLTSIMLMLITTVGILVLIYSDNYMAHDQGYLRFFSYMSF 120

Query: 161 FNKSMLGLVTSSNLIRLSLFW------------------------------ELVGMWSYL 220
           F+ SMLGLVTSSNLI++ +FW                                 G +  L
Sbjct: 121 FSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPTAANACQKAFVTNRFGDFGLL 180

Query: 221 L--IGF-WFTPP----------------------------TAANACAVAKSAQFPLHLWL 280
           L  +GF W T                              T   A AVAKSAQFPLH+WL
Sbjct: 181 LGILGFYWITGSFEFRDLFELLTNLIYNNDVNSPFVTLCATLLFAGAVAKSAQFPLHVWL 240

Query: 281 PDAMEGPTQISALIHVATM---GKFSCSS-ASSFIVIPYIMNLIAGDNNSTI-WSYFSSC 340
           PDAMEGPT ISALIH ATM   G F        FIVIPYIMNLIA     T+      + 
Sbjct: 241 PDAMEGPTPISALIHAATMVAAGVFLVGRLLPLFIVIPYIMNLIAVIGVITVLLGATLAL 300

Query: 341 SKRDSEK------FSQPILQCLNLDLGPF-----------------------IIHSMESV 394
           +++D ++       SQ     L L +G +                       +IHSME++
Sbjct: 301 AQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSVIHSMETI 360

[Close]
BLAST of CmoCh04G020700 vs. TAIR10
Match: ATCG01010.1 (ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-45
Identity = 119/237 (50.21%), Postives = 140/237 (59.07%), Query Frame = 1 

Query: 190 VAKSAQFPLHLWLPDAMEGPTQISALIHVATM---GKFSCSS-ASSFIVIPYIMNLIAGD 249
           +AKSAQFPLH+WLPDAMEGPT ISALIH ATM   G F  +     FIVIP IM +I+  
Sbjct: 238 IAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYIISLI 297

Query: 250 NNSTI-WSYFSSCSKRDSEK------FSQPILQCLNLDLGPF------------------ 309
              T+      + +++D ++       SQ     L L +G +                  
Sbjct: 298 GIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLF 357

Query: 310 -----IIHSMESVVGYSRDKSQNMVLMGVPFLSLCGIPPLACFWSKDEILNDSWLYSPIF 369
                IIHSME++VGYS DKSQNM+LMG     L    P+    +K   L  +       
Sbjct: 358 LGSGSIIHSMEAIVGYSPDKSQNMILMG----GLTKHVPI----TKTAFLIGT------- 417

Query: 370 LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSRAGLTPVYMFPIYLLTFEGHLN 393
           LSLCGIPPLACFWSKDEILNDS L+SPIFAIIACS AGLT  YMF IYLLTFEGHLN
Sbjct: 418 LSLCGIPPLACFWSKDEILNDSLLFSPIFAIIACSTAGLTAFYMFRIYLLTFEGHLN 459

[Close]
BLAST of CmoCh04G020700 vs. TAIR10
Match: ATCG01050.1 (ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-08
Identity = 64/181 (35.36%), Postives = 81/181 (44.75%), Query Frame = 1 

Query: 45  NGLSIGPILLMGFITTLTTLVAWPVTRDSGFFHFLM-----SETSTFFFRPQPKLFDLYL 104
           +GLSIG ILL GFITTL TL A+PVTRDS FFHFLM      +  +F  R      DL L
Sbjct: 89  DGLSIGTILLTGFITTLATLAAFPVTRDSRFFHFLMLAMYSGQIGSFSSR------DLLL 148

Query: 105 IYGWSWTINNAFSLEWGYLIDPLTCIIDNYMSHDQGYLRAYISLFNK--------SMLGL 164
                      F + W   + P+  ++  +    + Y      L+           +LG+
Sbjct: 149 -----------FFIMWELELIPVYLLLSMWGGKKRLYSATKFILYTAGSSIFLLIGVLGI 208

Query: 165 -VTSSNLIRLSLFWELVGMWSY-------LLIGFWFTPPTAANACAVAKSAQFPLHLWLP 205
            +  SN   L+L  EL+   SY         IGF         A AV KS   PLH WLP
Sbjct: 209 SLYGSNEPTLNL--ELLANKSYPVTLEILFYIGFLI-------AFAV-KSPIIPLHTWLP 242

[Close]
BLAST of CmoCh04G020700 vs. TAIR10
Match: ATMG00060.1 (ATMG00060.1 NADH dehydrogenase subunit 5C)

HSP 1 Score: 53.1 bits (126), Expect = 4.6e-07
Identity = 37/104 (35.58%), Postives = 47/104 (45.19%), Query Frame = 1 

Query: 105 WTINNAFSLEWGYLIDPLTCII---------------DNYMSHDQGYLR--AYISLFNKS 164
           W  +  F   WG+L D  T ++                +YMS D    R   Y+S+    
Sbjct: 64  WISSEMFDASWGFLFDSPTVVMLIVVTSISSLVHLYSISYMSEDPHSPRFMCYLSILTFF 123

Query: 165 MLGLVTSSNLIRLSLFWELVGMWSYLLIGFWFTPPTAANACAVA 192
           M  LVT  N ++L L WE VG+ SYLLI FWFT   A  A   A
Sbjct: 124 MPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKAATKA 167

[Close]
BLAST of CmoCh04G020700 vs. TAIR10
Match: ATMG00513.1 (ATMG00513.1 NADH dehydrogenase 5A)

HSP 1 Score: 53.1 bits (126), Expect = 4.6e-07
Identity = 37/104 (35.58%), Postives = 47/104 (45.19%), Query Frame = 1 

Query: 105 WTINNAFSLEWGYLIDPLTCII---------------DNYMSHDQGYLR--AYISLFNKS 164
           W  +  F   WG+L D  T ++                +YMS D    R   Y+S+    
Sbjct: 64  WISSEMFDASWGFLFDSPTVVMLIVVTSISSLVHLYSISYMSEDPHSPRFMCYLSILTFF 123

Query: 165 MLGLVTSSNLIRLSLFWELVGMWSYLLIGFWFTPPTAANACAVA 192
           M  LVT  N ++L L WE VG+ SYLLI FWFT   A  A   A
Sbjct: 124 MPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKAATKA 167

[Close]
BLAST of CmoCh04G020700 vs. TAIR10
Match: ATMG00665.1 (ATMG00665.1 NADH dehydrogenase 5B)

HSP 1 Score: 53.1 bits (126), Expect = 4.6e-07
Identity = 37/104 (35.58%), Postives = 47/104 (45.19%), Query Frame = 1 

Query: 105 WTINNAFSLEWGYLIDPLTCII---------------DNYMSHDQGYLR--AYISLFNKS 164
           W  +  F   WG+L D  T ++                +YMS D    R   Y+S+    
Sbjct: 64  WISSEMFDASWGFLFDSPTVVMLIVVTSISSLVHLYSISYMSEDPHSPRFMCYLSILTFF 123

Query: 165 MLGLVTSSNLIRLSLFWELVGMWSYLLIGFWFTPPTAANACAVA 192
           M  LVT  N ++L L WE VG+ SYLLI FWFT   A  A   A
Sbjct: 124 MPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKAATKA 167

[Close]
BLAST of CmoCh04G020700 vs. NCBI nr
Match: gi|6424773|gb|AAF08108.1| (NADH dehydrogenase subunit F (chloroplast) [Clerodendrum trichotomum])

HSP 1 Score: 253.8 bits (647), Expect = 5.0e-64
Identity = 182/405 (44.94%), Postives = 211/405 (52.10%), Query Frame = 1 

Query: 101 YGWSWTINNAFSLEWGYLIDPLTCII---------------DNYMSHDQGYLR--AYISL 160
           Y WSWT++N FSLE+GYLIDPLT I+               DNYM+HDQGYLR  +Y+S 
Sbjct: 71  YVWSWTLDNDFSLEFGYLIDPLTSIMLMLITTVGILVLIYSDNYMAHDQGYLRFFSYMSF 130

Query: 161 FNKSMLGLVTSSNLIRLSLFW------------------------------ELVGMWSYL 220
           F+ SMLGLVTSSNLI++ +FW                                 G +  L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPTAANACQKAFVTNRFGDFGLL 190

Query: 221 L--IGF-WFTPP----------------------------TAANACAVAKSAQFPLHLWL 280
           L  +GF W T                              T   A AVAKSAQFPLH+WL
Sbjct: 191 LGILGFYWITGSFEFRDLFELLTNLIYNNDVNSPFVTLCATLLFAGAVAKSAQFPLHVWL 250

Query: 281 PDAMEGPTQISALIHVATM---GKFSCSS-ASSFIVIPYIMNLIAGDNNSTI-WSYFSSC 340
           PDAMEGPT ISALIH ATM   G F        FIVIPYIMNLIA     T+      + 
Sbjct: 251 PDAMEGPTPISALIHAATMVAAGVFLVGRLLPLFIVIPYIMNLIAVIGVITVLLGATLAL 310

Query: 341 SKRDSEK------FSQPILQCLNLDLGPF-----------------------IIHSMESV 394
           +++D ++       SQ     L L +G +                       +IHSME++
Sbjct: 311 AQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSVIHSMETI 370

[Close]
BLAST of CmoCh04G020700 vs. NCBI nr
Match: gi|6739319|gb|AAF27197.1|AF111716_1 (NADH dehydrogenase [Abutilon x hybridum])

HSP 1 Score: 252.3 bits (643), Expect = 1.5e-63
Identity = 182/410 (44.39%), Postives = 208/410 (50.73%), Query Frame = 1 

Query: 101 YGWSWTINNAFSLEWGYLIDPLTCII---------------DNYMSHDQGYLR--AYISL 160
           Y WSWTINN FS E+GY ID LT I+               DNYMSHDQGYLR  AY+SL
Sbjct: 71  YVWSWTINNGFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSL 130

Query: 161 FNKSMLGLVTSSNLIRLSLFW------------------------------ELVGMWSYL 220
           FN SMLGLVTSSNLI++ +FW                                +G +  L
Sbjct: 131 FNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLL 190

Query: 221 L--IGF-WFT---------------------PPTAANACA-------VAKSAQFPLHLWL 280
           L  +GF W T                     P      CA       VAKSAQFPLH+WL
Sbjct: 191 LXILGFYWITGSFEFQDLFEIFNNLIYNNEVPFLFVTLCASLLFTGAVAKSAQFPLHVWL 250

Query: 281 PDAMEGPTQISALIHVATM---GKFSCSS-ASSFIVIPYIMNLIAGDNNSTI-WSYFSSC 340
           PDAMEGPT ISALIH ATM   G F  +     FIVIPYIMNLI+     T+      + 
Sbjct: 251 PDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLISLIGIITVLLGATLAI 310

Query: 341 SKRDSEK------FSQPILQCLNLDLGPF-----------------------IIHSMESV 394
           +++D ++       SQ     L L +G +                       IIHSME++
Sbjct: 311 AQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEAI 370

[Close]
BLAST of CmoCh04G020700 vs. NCBI nr
Match: gi|982898211|ref|YP_009221857.1| (NADH-plastoquinone oxidoreductase subunit 5 (chloroplast) [Mesembryanthemum crystallinum])

HSP 1 Score: 250.0 bits (637), Expect = 7.2e-63
Identity = 182/402 (45.27%), Postives = 214/402 (53.23%), Query Frame = 1 

Query: 101 YGWSWTINNAFSLEWGYLIDPLTCII---------------DNYMSHDQGYLR--AYISL 160
           Y WSWTINN FSLE+GYLIDPLT I+               DNYMSHDQGYLR  AY+S 
Sbjct: 71  YVWSWTINNDFSLEFGYLIDPLTSIMLMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSF 130

Query: 161 FNKSMLGLVTSSNLIRL------------------------------SLFWELVGMWSYL 220
           FN SMLGLVTSSNLI++                              +     VG +  L
Sbjct: 131 FNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLL 190

Query: 221 L--IG-FWFTPP------------TAANACAVAKSAQFPLHLWLPDAMEGPTQISALIHV 280
           L  +G +W T                 N  AVAKSAQFPLH+WLPDAMEGPT ISALIH 
Sbjct: 191 LGILGLYWITGSFEFGDLFEIFNSLIKNNGAVAKSAQFPLHVWLPDAMEGPTPISALIHA 250

Query: 281 ATM---GKFSCSS-ASSFIVIPYIMNLIAGDNNSTI-WSYFSSCSKRDSEK------FSQ 340
           ATM   G F  +     F VI YIM +I+     T+      + +++D ++       SQ
Sbjct: 251 ATMVAAGIFLVARLLPLFTVIHYIMYVISFIGIITVLLGATLALAQKDIKRSLAYSTMSQ 310

Query: 341 PILQCLNLDLGPF-----------------------IIHSMESVVGYSRDKSQNMVLMGV 400
                L L +G +                       IIHSME++VGYS +KSQNMVLMG 
Sbjct: 311 LGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMETIVGYSPEKSQNMVLMG- 370

Query: 401 PFLSLCGIPPLACFWSKDEILNDSWLYSPIFLSLCGIPPLACFWSKDEILNDSWLYSPIF 406
               L    P+    +K   L  +       LSLCGIPPLACFWSKDEILNDSWLYSPIF
Sbjct: 371 ---GLTRHVPI----TKTAFLIGT-------LSLCGIPPLACFWSKDEILNDSWLYSPIF 430

[Close]
BLAST of CmoCh04G020700 vs. NCBI nr
Match: gi|33950051|gb|AAQ55873.1| (NADH dehydrogenase subunit F [Pourouma sp. gw1512])

HSP 1 Score: 250.0 bits (637), Expect = 7.2e-63
Identity = 187/433 (43.19%), Postives = 220/433 (50.81%), Query Frame = 1 

Query: 73  SGFFHFLMSETSTFFFRPQPKLFDLYLIYGWSWTINNAFSLEWGYLIDPLTCII------ 132
           S  F  ++   ST+ F  Q     +YL   WSWTINN FSLE+GYL+DPLT I+      
Sbjct: 6   SVLFLSIVMSFSTYLFIQQKNNPSIYLSI-WSWTINNDFSLEFGYLVDPLTSIMLILITT 65

Query: 133 ---------DNYMSHDQGYLR--AYISLFNKSMLGLVTSSNLIRL--------------- 192
                    DNYMSHDQGYLR  AY+S FN SMLGLVTSSNLI++               
Sbjct: 66  VGIMVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLI 125

Query: 193 ---------------SLFWELVGMWSYLL--IGF-WFTPPTA------------------ 252
                          +     VG +  LL  +GF W T                      
Sbjct: 126 GFWFTRPTAANSCQKAFVTNRVGDFGLLLGILGFYWITGSLEFRDLFEIFNNLVYNNEVN 185

Query: 253 ---ANACA-------VAKSAQFPLHLWLPDAMEGPTQISALIHVATM---GKFSCSS-AS 312
              A +CA       +AKSAQFPLH+WLPDAMEGPT ISALIH ATM   G F  +    
Sbjct: 186 FLFATSCAFLLFSGAIAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLP 245

Query: 313 SFIVIPYIMNLIAGDNNST-IWSYFSSCSKRDSEK------FSQPILQCLNLDLGPF--- 372
             IV+PYIMNLIA     T +     + +++D ++       SQ     L L +G +   
Sbjct: 246 LLIVLPYIMNLIALIGIITLLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAA 305

Query: 373 --------------------IIHSMESVVGYSRDKSQNMVLMGVPFLSLCGIPPLACFWS 394
                               IIHSME++VGYS DKSQN+V MG       G+        
Sbjct: 306 LFHLITHAYSKALLFLGSGSIIHSMETIVGYSPDKSQNLVFMG-------GLR------K 365

[Close]
BLAST of CmoCh04G020700 vs. NCBI nr
Match: gi|1695985|gb|AAB37160.1| (NADH dehydrogenase, partial (chloroplast) [Tetraclea coulteri])

HSP 1 Score: 249.6 bits (636), Expect = 9.4e-63
Identity = 180/405 (44.44%), Postives = 209/405 (51.60%), Query Frame = 1 

Query: 101 YGWSWTINNAFSLEWGYLIDPLTCII---------------DNYMSHDQGYLR--AYISL 160
           Y WSWT++N FSLE+GYLIDPLT I+               DNYM+HDQGYLR  +Y+S 
Sbjct: 61  YVWSWTLDNDFSLEFGYLIDPLTSIMLMLITTVGILVLIYSDNYMAHDQGYLRFFSYMSF 120

Query: 161 FNKSMLGLVTSSNLIRLSLFW------------------------------ELVGMWSYL 220
           F+ SMLGLVTSSNLI++ +FW                                 G +  L
Sbjct: 121 FSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPTAANACQKAFVTNRFGDFGLL 180

Query: 221 L--IGF-WFTPP----------------------------TAANACAVAKSAQFPLHLWL 280
           L  +GF W T                              T   A AVAKSAQFPLH+WL
Sbjct: 181 LGILGFYWITGSFEFRDLFELLTNLIYNNDVNSPFVTLCATLLFAGAVAKSAQFPLHVWL 240

Query: 281 PDAMEGPTQISALIHVATM---GKFSCSS-ASSFIVIPYIMNLIAGDNNSTI-WSYFSSC 340
           PDAMEGPT ISALIH ATM   G F        FIVIPYIMNLIA     T+      + 
Sbjct: 241 PDAMEGPTPISALIHAATMVAAGVFLVGRLLPLFIVIPYIMNLIAVIGVITVLLGATLAL 300

Query: 341 SKRDSEK------FSQPILQCLNLDLGPF-----------------------IIHSMESV 394
           +++D ++       SQ     L L +G +                       +IHSME++
Sbjct: 301 AQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKALLFLGSGSVIHSMETI 360

The following BLAST results are available for this feature:
BLAST of CmoCh04G020700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NU5C_CUCSA5.4e-5053.11NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=nd... [more]
NU5C_VITVI2.0e-4951.59NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Vitis vinifera GN=ndh... [more]
NU5C_BUXMI2.3e-4850.40NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Buxus microphylla GN=... [more]
NU5C_EUCGG2.9e-4851.04NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Eucalyptus globulus s... [more]
NU5C_PLAOC5.0e-4851.88NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Platanus occidentalis... [more]
BLAST of CmoCh04G020700 vs. TrEMBL
Match NameE-valueIdentityDescription
Q9TLC1_9LAMI3.5e-6444.94NADH dehydrogenase subunit F OS=Clerodendrum trichotomum GN=ndhF PE=3 SV=1[more]
Q9MVL7_9ROSI1.0e-6344.39NADH dehydrogenase (Fragment) OS=Abutilon x hybridum GN=ndhF PE=3 SV=2[more]
A0A0G2R8N3_MESCR5.0e-6345.27NADH-plastoquinone oxidoreductase subunit 5 OS=Mesembryanthemum crystallinum GN=... [more]
Q6JXD3_9ROSA5.0e-6343.19NADH dehydrogenase subunit F (Fragment) OS=Pourouma sp. gw1512 GN=ndhF PE=3 SV=1[more]
O03659_9LAMI6.6e-6344.44NADH dehydrogenase (Fragment) OS=Tetraclea coulteri GN=ndhF PE=3 SV=1[more]
BLAST of CmoCh04G020700 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01010.11.1e-4550.21ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein[more]
ATCG01050.11.1e-0835.36ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein[more]
ATMG00060.14.6e-0735.58ATMG00060.1 NADH dehydrogenase subunit 5C[more]
ATMG00513.14.6e-0735.58ATMG00513.1 NADH dehydrogenase 5A[more]
ATMG00665.14.6e-0735.58ATMG00665.1 NADH dehydrogenase 5B[more]
BLAST of CmoCh04G020700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|6424773|gb|AAF08108.1|5.0e-6444.94NADH dehydrogenase subunit F (chloroplast) [Clerodendrum trichotomum][more]
gi|6739319|gb|AAF27197.1|AF111716_11.5e-6344.39NADH dehydrogenase [Abutilon x hybridum][more]
gi|982898211|ref|YP_009221857.1|7.2e-6345.27NADH-plastoquinone oxidoreductase subunit 5 (chloroplast) [Mesembryanthemum crys... [more]
gi|33950051|gb|AAQ55873.1|7.2e-6343.19NADH dehydrogenase subunit F [Pourouma sp. gw1512][more]
gi|1695985|gb|AAB37160.1|9.4e-6344.44NADH dehydrogenase, partial (chloroplast) [Tetraclea coulteri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001750ND/Mrp_mem
IPR018393NADHpl_OxRdtase_5_subgr
Vocabulary: Molecular Function
TermDefinition
GO:0008137NADH dehydrogenase (ubiquinone) activity
Vocabulary: Biological Process
TermDefinition
GO:0042773ATP synthesis coupled electron transport
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0042773 ATP synthesis coupled electron transport
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020700.1CmoCh04G020700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitPFAMPF00361Proton_antipo_Mcoord: 335..375
score: 1.4E-6coord: 189..226
score: 3.
IPR018393NADH-plastoquinone oxidoreductase, chain 5 subgroupPRINTSPR01435NPOXDRDTASE5coord: 367..389
score: 8.2E-6coord: 5..24
score: 8.
NoneNo IPR availablePANTHERPTHR22773NADH DEHYDROGENASEcoord: 101..393
score: 8.4
NoneNo IPR availablePANTHERPTHR22773:SF82NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 5, CHLOROPLASTICcoord: 101..393
score: 8.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020700Watermelon (97103) v2cmowmbB699
CmoCh04G020700Wax gourdcmowgoB0902
CmoCh04G020700Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G020700Cucurbita maxima (Rimu)cmacmoB741
CmoCh04G020700Watermelon (Charleston Gray)cmowcgB623
CmoCh04G020700Watermelon (97103) v1cmowmB733
CmoCh04G020700Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020700Cucurbita pepo (Zucchini)cmocpeB680
CmoCh04G020700Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G020700Bottle gourd (USVL1VR-Ls)cmolsiB623