CmoCh04G020690 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G020690
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNADH dehydrogenase subunit F
LocationCmo_Chr04 : 11817979 .. 11819490 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAATAACCAAAGGTCTTCTTCTTTGGGAAAAAAAACAGCATATCAAATGGACAGTAATCTAACAAAAATGATGCGTCCTTTTGTGAGAATTCCCTATTTTTGTACTCAGACTACTTTTGCGTATCCTTATGAAGTAGATAATACGATGCTATTTCCGATGTTTGTCTTATCCCTATTTACTTTCTTTGTTGGAGTCATAGGAATTCCGTTCACTCAATTCAATCAAGAAGCTATTGAGTTGAATATATTAGACAAATGGTTAACTCCGTCTATAAACTTGTTACATGAAAGTTCAACCGATTCTGAAAATTGGTATTGGTATGAATTTGTGAAAAATGCAACCTTTTCTCTCAGTATAGGTTATTCGAAATATTTATAGCGTTCTTTGCCTGCTTATTCATCTTTACTAAATTGGGTTAGGGTCATATGGTTTACATCGATGCTTTTTTATAGAATATCCTTAATTGGGGGCATAAGAGTATTAGCTGAATTCACTTCTTTTTTTTTATGGGGAATGGATGGAATTACCAATGCTAGGGGTATTCTGAATTTGTTTATCGCAGAAAGTATGAAAATAGTCACAAGAGGGGTTTCAAACCAGAAGATATTTTTTTTCGTCTGTATCTAAATCTAACAGCATTTTCTCATTTTCTCATTTTCTTTAGTTACATCCGAGCAGAGGTTAAGAAGTTTCATAAACAGGTCTTTTTCTCTTTTGTTTGATAACGTGTCCTTTTAAAGTAGAATTCCTCCTTTCTTTTTTTCTTTCCAGTCAATCTGTCTCATTCATCTTCCGTTTCATCGATTTTGTCCGAATCTTCATTTTCTTCCGAAACAAAGGGAAGGAGAAGTATCTTCTTCGGTAGATCCCTCTTGTTCCTGTTTAGTCCCCTTTGTTTCTTTCAGTTTCTTAGTCAGAATGGGTGAAGGTATTCCGCCTAAATAGTAGACACAAGTAATAAGAGAATACTAAAGATTCGAGCCATAGAATTTCTCAATTCTGACACAAGGTACTTATTAGATCTACATAAAATTCTTTTGATGTAGCCAGACTCATATCAATCCAACCCATTGAACGAAGAAAATGTGACTAATTAACCAACCAACAAAACTACTTCCTACAAAGATCATCTTGTTGTTGCATCGAAACATAGAAATCTTGACTAATCTGACCTGACACACATTGAACTTGGTAAAATGAAATGGTTGAATAATGATGAGATTATGAGGGAATACAAATTGAATGCTAAGATTACGCATTGAGTTTCTGGTAGTAGATCCATAATCGAAAAAGGATTTGTGAGATTGTTACAGAAGAAATGAAACAAAAGACACGGTAGAGCTAGGACAGTTATTGTATGAGGTTTATCCAATGCTAGATGCAGAAAGACAGAGGCGCATAATAGATCGATATGAACTGAGCTGTCCCATAATCAAACCTATTGTTACTGATACTTTCTTCTCGGTTCCTTCTTCCATAACCCGAGCTCGGAGAAGGAAGAGATAA

mRNA sequence

ATGAATAATAACCAAAGGTCTTCTTCTTTGGGAAAAAAAACAGCATATCAAATGGACAGTAATCTAACAAAAATGATGCGTCCTTTTGTGAGAATTCCCTATTTTTGTACTCAGACTACTTTTGCGTATCCTTATGAAGTAGATAATACGATGCTATTTCCGATAATATCCTTAATTGGGGGCATAAGAGTATTAGCTGAATTCACTTCTTTTTTTTTATGGGGAATGGATGGAATTACCAATGCTAGGGGTATTCTGAATTTGTTTATCGCAGAAATTACATCCGAGCAGAGGTTAAGAAGTTTCATAAACAGTCAATCTGTCTCATTCATCTTCCGTTTCATCGATTTTGTCCGAATCTTCATTTTCTTCCGAAACAAAGGGAAGGAGAAGTATCTTCTTCGAAGAAATGAAACAAAAGACACGGTAGAGCTAGGACAGTTATTGTATGAGGTTTATCCAATGCTAGATGCAGAAAGACAGAGGCGCATAATAGATCGATATGAACTGAGCTGTCCCATAATCAAACCTATTGTTACTGATACTTTCTTCTCGGTTCCTTCTTCCATAACCCGAGCTCGGAGAAGGAAGAGATAA

Coding sequence (CDS)

ATGAATAATAACCAAAGGTCTTCTTCTTTGGGAAAAAAAACAGCATATCAAATGGACAGTAATCTAACAAAAATGATGCGTCCTTTTGTGAGAATTCCCTATTTTTGTACTCAGACTACTTTTGCGTATCCTTATGAAGTAGATAATACGATGCTATTTCCGATAATATCCTTAATTGGGGGCATAAGAGTATTAGCTGAATTCACTTCTTTTTTTTTATGGGGAATGGATGGAATTACCAATGCTAGGGGTATTCTGAATTTGTTTATCGCAGAAATTACATCCGAGCAGAGGTTAAGAAGTTTCATAAACAGTCAATCTGTCTCATTCATCTTCCGTTTCATCGATTTTGTCCGAATCTTCATTTTCTTCCGAAACAAAGGGAAGGAGAAGTATCTTCTTCGAAGAAATGAAACAAAAGACACGGTAGAGCTAGGACAGTTATTGTATGAGGTTTATCCAATGCTAGATGCAGAAAGACAGAGGCGCATAATAGATCGATATGAACTGAGCTGTCCCATAATCAAACCTATTGTTACTGATACTTTCTTCTCGGTTCCTTCTTCCATAACCCGAGCTCGGAGAAGGAAGAGATAA
BLAST of CmoCh04G020690 vs. Swiss-Prot
Match: NU5C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=ndhF PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.2e-12
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIG 60
           MNN +RSS   KKT Y  +SN+TK MRPFV  P+F T+ TF YPYE +NTMLFP+     
Sbjct: 499 MNNKERSSFWMKKTTYPFNSNVTKKMRPFVSSPHFSTKNTFYYPYESENTMLFPMF---- 558

Query: 61  GIRVLAEFTSF 72
              VL+ FT F
Sbjct: 559 ---VLSLFTLF 562

BLAST of CmoCh04G020690 vs. Swiss-Prot
Match: NU5C_PANGI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Panax ginseng GN=ndhF PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-09
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLI 60
           MNN++ +S   KKT YQMD N+  + +PF+ I YF  +  F+YPYE DNTMLFPI+ L+
Sbjct: 496 MNNHEIASFFSKKT-YQMDQNVRNITQPFITITYFGNKNIFSYPYESDNTMLFPILVLV 553

BLAST of CmoCh04G020690 vs. Swiss-Prot
Match: NU5C_LACSA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Lactuca sativa GN=ndhF PE=3 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLI 60
           M  N R S       Y++D N+  M++PF+ IP+F    T++YPYE DNTMLFPI+ LI
Sbjct: 499 MKKNPRPSFFSNNKVYKIDENVRNMIQPFLSIPHFGNTKTYSYPYESDNTMLFPILILI 557

BLAST of CmoCh04G020690 vs. Swiss-Prot
Match: NU5C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhF PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLI 60
           MNNN+R+S    KT YQ+D N    +RPF+ I  F T+ TF+YP+E DNTMLF ++ L+
Sbjct: 499 MNNNERASFFSNKT-YQIDGNGKNRIRPFITITNFVTKNTFSYPHESDNTMLFSMVILV 556

BLAST of CmoCh04G020690 vs. Swiss-Prot
Match: NU5C_ADEHI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Adenocaulon himalaicum GN=ndhF PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-08
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLI 60
           M  N R+S    K  Y++D NL  +++PF+ IP+F T  T++YPYE DNTMLFPI+ L+
Sbjct: 499 MKKNGRASFFSNKV-YKIDENLRNIIQPFLSIPHFGTTKTYSYPYESDNTMLFPILILV 556

BLAST of CmoCh04G020690 vs. TrEMBL
Match: A0A0S2IG09_9ROSI (NdhF OS=Cucurbita okeechobeensis subsp. martinezii GN=ndhF PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.2e-19
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIG 60
           MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+     
Sbjct: 499 MNNNQRSSFLGKKTAYQMDSNVTKMMRPFVSIPHFCTKTTFSYPYESDNTMLFPMF---- 558

Query: 61  GIRVLAEFTSF 72
              VL+ FT F
Sbjct: 559 ---VLSLFTLF 562

BLAST of CmoCh04G020690 vs. TrEMBL
Match: A0A0S2IGT3_CUCPE (NdhF OS=Cucurbita pepo var. texana GN=ndhF PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.2e-19
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIG 60
           MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+     
Sbjct: 499 MNNNQRSSFLGKKTAYQMDSNVTKMMRPFVSIPHFCTKTTFSYPYESDNTMLFPMF---- 558

Query: 61  GIRVLAEFTSF 72
              VL+ FT F
Sbjct: 559 ---VLSLFTLF 562

BLAST of CmoCh04G020690 vs. TrEMBL
Match: A0A0S2IE97_9ROSI (NdhF OS=Cucurbita argyrosperma subsp. sororia GN=ndhF PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.2e-19
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIG 60
           MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+     
Sbjct: 499 MNNNQRSSFLGKKTAYQMDSNVTKMMRPFVSIPHFCTKTTFSYPYESDNTMLFPMF---- 558

Query: 61  GIRVLAEFTSF 72
              VL+ FT F
Sbjct: 559 ---VLSLFTLF 562

BLAST of CmoCh04G020690 vs. TrEMBL
Match: A0A0S2IES3_9ROSI (NdhF OS=Cucurbita ecuadorensis GN=ndhF PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.2e-19
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIG 60
           MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+     
Sbjct: 499 MNNNQRSSFLGKKTAYQMDSNVTKMMRPFVSIPHFCTKTTFSYPYESDNTMLFPMF---- 558

Query: 61  GIRVLAEFTSF 72
              VL+ FT F
Sbjct: 559 ---VLSLFTLF 562

BLAST of CmoCh04G020690 vs. TrEMBL
Match: A0A0S2IGR2_CUCPE (NdhF OS=Cucurbita pepo subsp. ovifera GN=ndhF PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.2e-19
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIG 60
           MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+     
Sbjct: 499 MNNNQRSSFLGKKTAYQMDSNVTKMMRPFVSIPHFCTKTTFSYPYESDNTMLFPMF---- 558

Query: 61  GIRVLAEFTSF 72
              VL+ FT F
Sbjct: 559 ---VLSLFTLF 562

BLAST of CmoCh04G020690 vs. NCBI nr
Match: gi|952954723|gb|ALO22082.1| (NdhF (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIG 60
           MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+     
Sbjct: 499 MNNNQRSSFLGKKTAYQMDSNVTKMMRPFVSIPHFCTKTTFSYPYESDNTMLFPMF---- 558

Query: 61  GIRVLAEFTSF 72
              VL+ FT F
Sbjct: 559 ---VLSLFTLF 562

BLAST of CmoCh04G020690 vs. NCBI nr
Match: gi|952954392|gb|ALO21756.1| (NdhF (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIG 60
           MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+     
Sbjct: 499 MNNNQRSSFLGKKTAYQMDSNVTKMMRPFVSIPHFCTKTTFSYPYESDNTMLFPMF---- 558

Query: 61  GIRVLAEFTSF 72
              VL+ FT F
Sbjct: 559 ---VLSLFTLF 562

BLAST of CmoCh04G020690 vs. NCBI nr
Match: gi|952954494|gb|ALO21856.1| (NdhF (plastid) [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIG 60
           MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+     
Sbjct: 499 MNNNQRSSFLGKKTAYQMDSNVTKMMRPFVSIPHFCTKTTFSYPYESDNTMLFPMF---- 558

Query: 61  GIRVLAEFTSF 72
              VL+ FT F
Sbjct: 559 ---VLSLFTLF 562

BLAST of CmoCh04G020690 vs. NCBI nr
Match: gi|952955069|gb|ALO22422.1| (NdhF (plastid) [Cucurbita okeechobeensis])

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIG 60
           MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+     
Sbjct: 499 MNNNQRSSFLGKKTAYQMDSNVTKMMRPFVSIPHFCTKTTFSYPYESDNTMLFPMF---- 558

Query: 61  GIRVLAEFTSF 72
              VL+ FT F
Sbjct: 559 ---VLSLFTLF 562

BLAST of CmoCh04G020690 vs. NCBI nr
Match: gi|952954766|gb|ALO22124.1| (NdhF (plastid) [Cucurbita ficifolia])

HSP 1 Score: 100.5 bits (249), Expect = 3.4e-18
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 1

Query: 1   MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIG 60
           MNNNQRSS LGKKT YQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+     
Sbjct: 499 MNNNQRSSFLGKKTTYQMDSNVTKMMRPFVSIPHFCTKTTFSYPYESDNTMLFPMF---- 558

Query: 61  GIRVLAEFTSF 72
              VL+ FT F
Sbjct: 559 ---VLSLFTLF 562

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NU5C_CUCSA8.2e-1254.93NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=nd... [more]
NU5C_PANGI2.9e-0952.54NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Panax ginseng GN=ndhF... [more]
NU5C_LACSA2.5e-0847.46NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Lactuca sativa GN=ndh... [more]
NU5C_EUCGG2.5e-0850.85NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Eucalyptus globulus s... [more]
NU5C_ADEHI4.2e-0849.15NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Adenocaulon himalaicu... [more]
Match NameE-valueIdentityDescription
A0A0S2IG09_9ROSI8.2e-1973.24NdhF OS=Cucurbita okeechobeensis subsp. martinezii GN=ndhF PE=3 SV=1[more]
A0A0S2IGT3_CUCPE8.2e-1973.24NdhF OS=Cucurbita pepo var. texana GN=ndhF PE=3 SV=1[more]
A0A0S2IE97_9ROSI8.2e-1973.24NdhF OS=Cucurbita argyrosperma subsp. sororia GN=ndhF PE=3 SV=1[more]
A0A0S2IES3_9ROSI8.2e-1973.24NdhF OS=Cucurbita ecuadorensis GN=ndhF PE=3 SV=1[more]
A0A0S2IGR2_CUCPE8.2e-1973.24NdhF OS=Cucurbita pepo subsp. ovifera GN=ndhF PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|952954723|gb|ALO22082.1|1.2e-1873.24NdhF (plastid) [Cucurbita ecuadorensis][more]
gi|952954392|gb|ALO21756.1|1.2e-1873.24NdhF (plastid) [Cucurbita argyrosperma][more]
gi|952954494|gb|ALO21856.1|1.2e-1873.24NdhF (plastid) [Cucurbita argyrosperma subsp. sororia][more]
gi|952955069|gb|ALO22422.1|1.2e-1873.24NdhF (plastid) [Cucurbita okeechobeensis][more]
gi|952954766|gb|ALO22124.1|3.4e-1871.83NdhF (plastid) [Cucurbita ficifolia][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002128NADH_UbQ_OxRdtase_chlpt_su5_C
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0009536 plastid
molecular_function GO:0016491 oxidoreductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020690.1CmoCh04G020690.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002128NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminalPFAMPF01010Proton_antipo_Ccoord: 2..59
score: 7.9

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None