CmoCh04G020690 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATAATAACCAAAGGTCTTCTTCTTTGGGAAAAAAAACAGCATATCAAATGGACAGTAATCTAACAAAAATGATGCGTCCTTTTGTGAGAATTCCCTATTTTTGTACTCAGACTACTTTTGCGTATCCTTATGAAGTAGATAATACGATGCTATTTCCGATGTTTGTCTTATCCCTATTTACTTTCTTTGTTGGAGTCATAGGAATTCCGTTCACTCAATTCAATCAAGAAGCTATTGAGTTGAATATATTAGACAAATGGTTAACTCCGTCTATAAACTTGTTACATGAAAGTTCAACCGATTCTGAAAATTGGTATTGGTATGAATTTGTGAAAAATGCAACCTTTTCTCTCAGTATAGGTTATTCGAAATATTTATAGCGTTCTTTGCCTGCTTATTCATCTTTACTAAATTGGGTTAGGGTCATATGGTTTACATCGATGCTTTTTTATAGAATATCCTTAATTGGGGGCATAAGAGTATTAGCTGAATTCACTTCTTTTTTTTTATGGGGAATGGATGGAATTACCAATGCTAGGGGTATTCTGAATTTGTTTATCGCAGAAAGTATGAAAATAGTCACAAGAGGGGTTTCAAACCAGAAGATATTTTTTTTCGTCTGTATCTAAATCTAACAGCATTTTCTCATTTTCTCATTTTCTTTAGTTACATCCGAGCAGAGGTTAAGAAGTTTCATAAACAGGTCTTTTTCTCTTTTGTTTGATAACGTGTCCTTTTAAAGTAGAATTCCTCCTTTCTTTTTTTCTTTCCAGTCAATCTGTCTCATTCATCTTCCGTTTCATCGATTTTGTCCGAATCTTCATTTTCTTCCGAAACAAAGGGAAGGAGAAGTATCTTCTTCGGTAGATCCCTCTTGTTCCTGTTTAGTCCCCTTTGTTTCTTTCAGTTTCTTAGTCAGAATGGGTGAAGGTATTCCGCCTAAATAGTAGACACAAGTAATAAGAGAATACTAAAGATTCGAGCCATAGAATTTCTCAATTCTGACACAAGGTACTTATTAGATCTACATAAAATTCTTTTGATGTAGCCAGACTCATATCAATCCAACCCATTGAACGAAGAAAATGTGACTAATTAACCAACCAACAAAACTACTTCCTACAAAGATCATCTTGTTGTTGCATCGAAACATAGAAATCTTGACTAATCTGACCTGACACACATTGAACTTGGTAAAATGAAATGGTTGAATAATGATGAGATTATGAGGGAATACAAATTGAATGCTAAGATTACGCATTGAGTTTCTGGTAGTAGATCCATAATCGAAAAAGGATTTGTGAGATTGTTACAGAAGAAATGAAACAAAAGACACGGTAGAGCTAGGACAGTTATTGTATGAGGTTTATCCAATGCTAGATGCAGAAAGACAGAGGCGCATAATAGATCGATATGAACTGAGCTGTCCCATAATCAAACCTATTGTTACTGATACTTTCTTCTCGGTTCCTTCTTCCATAACCCGAGCTCGGAGAAGGAAGAGATAA ATGAATAATAACCAAAGGTCTTCTTCTTTGGGAAAAAAAACAGCATATCAAATGGACAGTAATCTAACAAAAATGATGCGTCCTTTTGTGAGAATTCCCTATTTTTGTACTCAGACTACTTTTGCGTATCCTTATGAAGTAGATAATACGATGCTATTTCCGATAATATCCTTAATTGGGGGCATAAGAGTATTAGCTGAATTCACTTCTTTTTTTTTATGGGGAATGGATGGAATTACCAATGCTAGGGGTATTCTGAATTTGTTTATCGCAGAAATTACATCCGAGCAGAGGTTAAGAAGTTTCATAAACAGTCAATCTGTCTCATTCATCTTCCGTTTCATCGATTTTGTCCGAATCTTCATTTTCTTCCGAAACAAAGGGAAGGAGAAGTATCTTCTTCGAAGAAATGAAACAAAAGACACGGTAGAGCTAGGACAGTTATTGTATGAGGTTTATCCAATGCTAGATGCAGAAAGACAGAGGCGCATAATAGATCGATATGAACTGAGCTGTCCCATAATCAAACCTATTGTTACTGATACTTTCTTCTCGGTTCCTTCTTCCATAACCCGAGCTCGGAGAAGGAAGAGATAA ATGAATAATAACCAAAGGTCTTCTTCTTTGGGAAAAAAAACAGCATATCAAATGGACAGTAATCTAACAAAAATGATGCGTCCTTTTGTGAGAATTCCCTATTTTTGTACTCAGACTACTTTTGCGTATCCTTATGAAGTAGATAATACGATGCTATTTCCGATAATATCCTTAATTGGGGGCATAAGAGTATTAGCTGAATTCACTTCTTTTTTTTTATGGGGAATGGATGGAATTACCAATGCTAGGGGTATTCTGAATTTGTTTATCGCAGAAATTACATCCGAGCAGAGGTTAAGAAGTTTCATAAACAGTCAATCTGTCTCATTCATCTTCCGTTTCATCGATTTTGTCCGAATCTTCATTTTCTTCCGAAACAAAGGGAAGGAGAAGTATCTTCTTCGAAGAAATGAAACAAAAGACACGGTAGAGCTAGGACAGTTATTGTATGAGGTTTATCCAATGCTAGATGCAGAAAGACAGAGGCGCATAATAGATCGATATGAACTGAGCTGTCCCATAATCAAACCTATTGTTACTGATACTTTCTTCTCGGTTCCTTCTTCCATAACCCGAGCTCGGAGAAGGAAGAGATAA
BLAST of CmoCh04G020690 vs. Swiss-Prot
Match: NU5C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=ndhF PE=3 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 8.2e-12 Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 1
BLAST of CmoCh04G020690 vs. Swiss-Prot
Match: NU5C_PANGI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Panax ginseng GN=ndhF PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.9e-09 Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1
BLAST of CmoCh04G020690 vs. Swiss-Prot
Match: NU5C_LACSA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Lactuca sativa GN=ndhF PE=3 SV=2) HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08 Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1
BLAST of CmoCh04G020690 vs. Swiss-Prot
Match: NU5C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhF PE=3 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08 Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1
BLAST of CmoCh04G020690 vs. Swiss-Prot
Match: NU5C_ADEHI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Adenocaulon himalaicum GN=ndhF PE=3 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 4.2e-08 Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1
BLAST of CmoCh04G020690 vs. TrEMBL
Match: A0A0S2IG09_9ROSI (NdhF OS=Cucurbita okeechobeensis subsp. martinezii GN=ndhF PE=3 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 8.2e-19 Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1
BLAST of CmoCh04G020690 vs. TrEMBL
Match: A0A0S2IGT3_CUCPE (NdhF OS=Cucurbita pepo var. texana GN=ndhF PE=3 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 8.2e-19 Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1
BLAST of CmoCh04G020690 vs. TrEMBL
Match: A0A0S2IE97_9ROSI (NdhF OS=Cucurbita argyrosperma subsp. sororia GN=ndhF PE=3 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 8.2e-19 Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1
BLAST of CmoCh04G020690 vs. TrEMBL
Match: A0A0S2IES3_9ROSI (NdhF OS=Cucurbita ecuadorensis GN=ndhF PE=3 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 8.2e-19 Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1
BLAST of CmoCh04G020690 vs. TrEMBL
Match: A0A0S2IGR2_CUCPE (NdhF OS=Cucurbita pepo subsp. ovifera GN=ndhF PE=3 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 8.2e-19 Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1
BLAST of CmoCh04G020690 vs. NCBI nr
Match: gi|952954723|gb|ALO22082.1| (NdhF (plastid) [Cucurbita ecuadorensis]) HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18 Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1
BLAST of CmoCh04G020690 vs. NCBI nr
Match: gi|952954392|gb|ALO21756.1| (NdhF (plastid) [Cucurbita argyrosperma]) HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18 Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1
BLAST of CmoCh04G020690 vs. NCBI nr
Match: gi|952954494|gb|ALO21856.1| (NdhF (plastid) [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18 Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1
BLAST of CmoCh04G020690 vs. NCBI nr
Match: gi|952955069|gb|ALO22422.1| (NdhF (plastid) [Cucurbita okeechobeensis]) HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18 Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1
BLAST of CmoCh04G020690 vs. NCBI nr
Match: gi|952954766|gb|ALO22124.1| (NdhF (plastid) [Cucurbita ficifolia]) HSP 1 Score: 100.5 bits (249), Expect = 3.4e-18 Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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