CmoCh04G020560 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G020560
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	HIV Tat-specific factor 1 like
Location	Cmo_Chr04 : 11499777 .. 11503872 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCCTGGAAAGTTCAAAACATGTCAGCTCAAAAGAACAAAGCTTTGAAATTAGAATTTATGAGTCTGAATCAAACCATTAAGCGTATGGATTGCAAGGAGACTGTCAGATAAGTTATGCAACACTTTGCATTCACAAAAAGAGAGAGAGTTGAAGTAAAAATGATTGTTCTTTATGTGTAAAAAATGATGGAGCTTTGGTTTTTGTTTACCCGCCGCTGCTATAAGGGTCTCTGAGTCCATTGGAGAAAATGATGTTGCTGCCAAATCTCTTAAGGATGAGTTTTATGTCCTGAAATTTAAGGGGAGACAAGGACATAGTGAGATTCTACGTCGGTTGGGGAGAAGAACGAATTATTCTTTATAAGGGTGTGAAAACCTCTTCCTAGTAGACGCGTTTTAGAAACCTCAAAGGGAAGCTTGAAAGGAAAAGCTCAAAGAGGATAATATATGTTAGCGGTGGGTTTGGGCTGTTACAAATGGTATTAGAGCCAGACACTAGGCGATGTGCCTGCGAAGAGGTTGAGCCCTGAAGGGGGGTGGACACGAGGCAGTGTGCCAACAAGGCTGGGTCTCGAGAGGGGTGGATTGTGAGATCCTATATTAGTTGGTGAGGAGAAAAAAAAACATTTTTTATAAGCGTGTGGAAACCTCTCTTGTATAAAAACCTTGAGGGGAAACCCAAAGAGGATGATATCTGCTAGTGGTGGGCCCCGAAGGGGGTGGATACGAGGAGGTGTGCCAGTAAGGACGCTGGGTCCCGAGGGGGTGGATTGTGAGATCCACTAACAGAATGGTCGGATGAACCCCAAAGTGGGGTGGATACGAGGCGGTGTGTTAGCAAGGATGCTGGGCCTCGAGGGGTAGTGTAACGACCCTAATATTTTACCTATTTAATCTAAGGTCATTACTATACTTTGAAATGCGGAATATACATTTAATGGACCCTATTCATAAATGTTGTTCGCACCCGCCTTTTTATTACCTCAAAAAAAAAAAAAAAAAATTACAAGGGAAAAAGGGAAACATTATTGAAAGAAAGGAAAAACAACAAAACCAAGAATGAATAGTTTATTCTACCCCAAGGTTTATTATACAAATACATTTCATCCTATTCTAACCTATACTAGAAATGGAAAAAAAAGACAACCAACTACCCTATGCATGTGCCACGATCCTGAGGTGTCCGATGCCATCGTCGTTGTCACATGGGTGCCTTGCCTTTATCTGCAAAAGTAAAGTAGCACGAGGCTTGAGTATTTCTAGAATACTCAGTAAGTGACCCCCTATCGGGGTTATGCAACAAACACATGCAATGAAATGATGGGACTTATCGTTCCGTTTCGTTTCATTTCGTTTTCCCTACGGTGTAATCCTAACAAGTAATCGTGGACGTATACCATATACTCTTACACGCAGCCCATACGTGCGAGTATGGGCTCACCAGCTAGTTCGCACATCGCTGGGCCACTGTCTCTAGCCGGTGGGCATGCTCTGGGGGCCAACTGGGACCCGTTAAAACTAAAACCATCACGGTAGCGCTATGCAGGGCATAACGATCGTTGTCCTGCCATTTGGATGTACGCGTCCGTACCCTCGTGATGGGATAGGGGTATCCCCCCAAATGCATGAACACACAATATGCATGAAGTCCCACTAGTCCTACAGTCATCATTTAATGAGCATAACCCCGTGTCACGTTTTCATGCTTACATGTCATTCTCATTCTCATTTTGTTACATATCATACATGTTCCTAGCGGGGTTATGTATCATGCAATTTACCGTATTTCATGTCATGCAATTCATTCAATCACATTCCCATACTCATACAACAAGCCATAATCGTACAAGGGTCACACATCGTCACATGCATTCATATCACATCCACTAAGCAGCATAAATAACATACATTCACATTCACATGATTTCGTACTTAAGCACATTAAGCTAGCATACAATTTAATGGCACGTGCATACATCACGGGCACATGCCAACATACAGCAATTAATGCGTAACCTACAACGGGTGAGCCACTTACTTGGTAGGCCTTAGCCGAAGTACTCCTTAGAATATAACGTAAGCTCCTAGCTCCTCGTGGACGTTCTACGCTTCCGTTGGTGGTTGGTTCCTATTGGTTCATGAGTCACTTCCATTAGTATTCCACAAAGAATAATAGATTCCCAACTGGAATTTGTGAAATACGACATTAAAATGTTCCCTTTTACCTTAAACAGGGTCGAAACCAGGTCCGGGAGGGTCGGAACGGTGTCAAACGGGCTGGAAACAGATTTTCCGAGCCGAATAAGCCGCTGGAGCCGAGGAGCCGCCGCCGAGCCGATGAAGCCGCCTGAGCCGAGAGGAGCCGCGCTGCAGACGTGACACGTGGCATAATCAGAGAGCAATCCGTGTGCAGGCGTCTCGGGTCGAGGCGCGGGTTCACGGGTTGCTCGCGGGTCTCGGGCCGAACGCGGATGACGGGCCGCGCGGTGATGGGCCGGCTTGCAGGTGAAGGCCAGGTGTTTGGGCTGCGGGTAATGTGGGTTCTGGGCTGACCGAAGGGACGGGGTTCGGTTCGGGTTTCCGGATCTGGATGTCGGGTCGGACTTCGTCCTCTTCGCCCCACAGCCTGCGCGATTTTCCGGCGATCTCTCTCTCTCTCCTCGCAACGTCGTCCCGACGTCCTTTTTCCCCTTTTTTCCCCCGTTCCCGAGCTTATCCTTCACCCTAACCCCGTTTTTTGTACAGATTTTGTTGGTAAGGGCCTCGCACTCCCGGATCTGGAGAAGCTCGGAAGTCCACCATTCCATCTTCCTTGCCGATGGTGTTCAGCGTACAGGATTCATCTAAAACCTACTCCTGATGTGTGTAGAGGGTTCTGGGATTACTTTTGTGGTGTGAAATGGGAGTTTTCGACGTCGATTCATACGGTTCGGCTTCGCCGAAGTTCCATCGGTTTTCTGTTCTCTCTCCTTTTTTCTCACCGTTTTCGTTTCCTTGCAGGTTCTTTCAGGGTGGCTGATGGCATCCCAGCCCTCGGCCGCCCTTTGTGGGTCGTGTGCAAGCGAAAACTCCAGCGTTCGCCGGAGTTTTCGGCTCTGCCGACGACCATCATTTTTTTTTTCGGTTCCGTTACATTACCTACCCCTAAAAGGGACTTTCATCCTCGAAAGTCTTGAACTCGTGGATCAACTTGGGATATTTTTCCTTTATTTCCTCCTCTCGTTTCCACGTAGCTTCCTCGACTTGGTGGTTACACCACAATACCTTAACAAAACCTATACTCCTATTACGTAAGGCTTTCACCTCTCGGGCTAGAATTTTAATCGGTTTCTACTAGTAACTTAAATTTTCCTCAATTTCAAGAGGTTTGTAGTCTATTACATGCATCGAATCTGGAATGTATTTCCTTAACATGGACACATGAAATACATCGTGTACGCTTGAAAGTGAAGGTGGTAAAGCTAGTTTGTAAGCTACCGGACCTACTCTTTCTAAAATTTCGAACGGTCCAATGAATCGGGGGCTAAGCTTCCCCTCGCGTCCGAATCTTGTCATGGATTCATGTATGATCGCAGCATAATAATCTTGGTGCACTCTTTGTTTGGTAAATTGTAATGCACAGGAGGTTTTGTGGCATAAAGTGTTTATGGAAAAGATGTTATTGGGAGACACGTTTGGAAGTGATAGGTGTCCTTGGAATGTTACATATATTCTTAATTGAAACAAACTTTTCATTGAATTAATGTAAAATTTACCAAGTATGATGCTTGCTTTAGGTGTATACAAGTTAACCCTAGACAATAGGAATACCCATACCCTAAAAAGGTGTAAACATTCAAAAGAAAAAATAGGTCCCCAAAATAAGGGGAAATTAAAGATGTTTGTTTCTGGACTATTAGTCCTTCTTCCTTCTAGGGAGTCTCTCATTATTATATATTATTTTATTTTGTGAAGGTAGCTTAGTGTTAATGATTTGCACAGGTTTGGTGGAAGACAAATTCATGCAAGCGAGGAGGATGGTTTGGTGAGGGATCTTGAAGCCGATGCTGCTCGTTTGGAGCAGTTTGGCTCTGAAATTGAGGCTCACTAA

mRNA sequence

ATGAGATCCTGGAAAGTTCAAAACATGTCAGCTCAAAAGAACAAAGCTTTGAAATTAGAATTTATGAGTCTGAATCAAACCATTAAGCGTATGGATTGCAAGGAGACTCTTAGTGTTAATGATTTGCACAGGTTTGGTGGAAGACAAATTCATGCAAGCGAGGAGGATGGTTTGGTGAGGGATCTTGAAGCCGATGCTGCTCGTTTGGAGCAGTTTGGCTCTGAAATTGAGGCTCACTAA

Coding sequence (CDS)

ATGAGATCCTGGAAAGTTCAAAACATGTCAGCTCAAAAGAACAAAGCTTTGAAATTAGAATTTATGAGTCTGAATCAAACCATTAAGCGTATGGATTGCAAGGAGACTCTTAGTGTTAATGATTTGCACAGGTTTGGTGGAAGACAAATTCATGCAAGCGAGGAGGATGGTTTGGTGAGGGATCTTGAAGCCGATGCTGCTCGTTTGGAGCAGTTTGGCTCTGAAATTGAGGCTCACTAA

Homology

[Close]

BLAST of CmoCh04G020560 vs. TrEMBL
Match: A0A0A0KZ32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G491190 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-07
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 30  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA 79
           R D ++ + + +   FGG+QIHASE+DGL     VRDLEADAARLEQFGSE+EA
Sbjct: 446 RKDAQKCIELMNGRWFGGKQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEA 499

[Close]

BLAST of CmoCh04G020560 vs. TrEMBL
Match: A0A0A0L2D6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G488690 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-07
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 31 MDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA 79
          M+ K  L V     FGG+QIHASE+DGL     VRDLEADAARLEQFGSE+EA
Sbjct: 1  MESKIALMVE--REFGGKQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEA 51

[Close]

BLAST of CmoCh04G020560 vs. TrEMBL
Match: A0A067H1I9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009565mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-06
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 30  RMDCKETLSVNDLHRFGGRQIHASEEDGLV-----RDLEADAARLEQFGSEIEA 79
           R D ++ + + +   FGGRQIHASE+DGLV     RDL+A+A+RLEQFG+E+EA
Sbjct: 478 RKDAQKCIELMNGRWFGGRQIHASEDDGLVNHAAIRDLDAEASRLEQFGAELEA 531

[Close]

BLAST of CmoCh04G020560 vs. TrEMBL
Match: A0A0D2RJC2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G087900 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-06
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 30  RMDCKETLSVNDLHRFGGRQIHASEEDG-----LVRDLEADAARLEQFGSEIEA 79
           R D ++ + + +   FGGRQIHASE+DG     LVRDL+ DA+RLEQFG+E+EA
Sbjct: 433 RKDAQKCIELMNGRWFGGRQIHASEDDGVVNHALVRDLDEDASRLEQFGAELEA 486

[Close]

BLAST of CmoCh04G020560 vs. TrEMBL
Match: A0A0D2QQG4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G087900 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-06
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 30  RMDCKETLSVNDLHRFGGRQIHASEEDG-----LVRDLEADAARLEQFGSEIEA 79
           R D ++ + + +   FGGRQIHASE+DG     LVRDL+ DA+RLEQFG+E+EA
Sbjct: 459 RKDAQKCIELMNGRWFGGRQIHASEDDGVVNHALVRDLDEDASRLEQFGAELEA 512

[Close]

BLAST of CmoCh04G020560 vs. NCBI nr
Match: gi|659083061|ref|XP_008442164.1| (PREDICTED: splicing factor U2AF-associated protein 2 isoform X2 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 30  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA 79
           R D ++ + + +   FGGRQIHASE+DGL     VRDLEADAARLEQFGSE+EA
Sbjct: 326 RRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEA 379

[Close]

BLAST of CmoCh04G020560 vs. NCBI nr
Match: gi|659083059|ref|XP_008442163.1| (PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 30  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA 79
           R D ++ + + +   FGGRQIHASE+DGL     VRDLEADAARLEQFGSE+EA
Sbjct: 444 RRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEA 497

[Close]

BLAST of CmoCh04G020560 vs. NCBI nr
Match: gi|700199615|gb|KGN54773.1| (hypothetical protein Csa_4G491190 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 5.4e-07
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 30  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA 79
           R D ++ + + +   FGG+QIHASE+DGL     VRDLEADAARLEQFGSE+EA
Sbjct: 446 RKDAQKCIELMNGRWFGGKQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEA 499

[Close]

BLAST of CmoCh04G020560 vs. NCBI nr
Match: gi|778694873|ref|XP_011653887.1| (PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 5.4e-07
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 30  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA 79
           R D ++ + + +   FGG+QIHASE+DGL     VRDLEADAARLEQFGSE+EA
Sbjct: 444 RKDAQKCIELMNGRWFGGKQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEA 497

[Close]

BLAST of CmoCh04G020560 vs. NCBI nr
Match: gi|702263528|ref|XP_010038460.1| (PREDICTED: splicing factor U2AF-associated protein 2 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-07
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 30  RMDCKETLSVNDLHRFGGRQIHASEEDG-----LVRDLEADAARLEQFGSEIEA 79
           R D ++ + + +   FGGRQIHASE+DG     LVRDLE DAARLEQFGSE+EA
Sbjct: 375 RKDAQKCIELMNGRWFGGRQIHASEDDGSVNHALVRDLEEDAARLEQFGSELEA 428

The following BLAST results are available for this feature:

BLAST of CmoCh04G020560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G020560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ32_CUCSA	3.8e-07	61.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G491190 PE=4 SV=1	[more]
A0A0A0L2D6_CUCSA	8.4e-07	66.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G488690 PE=4 SV=1	[more]
A0A067H1I9_CITSI	5.4e-06	55.56	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009565mg PE=4 SV=1	[more]
A0A0D2RJC2_GOSRA	7.1e-06	55.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G087900 PE=4 SV=1	[more]
A0A0D2QQG4_GOSRA	7.1e-06	55.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G087900 PE=4 SV=1	[more]

BLAST of CmoCh04G020560 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G020560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083061\|ref\|XP_008442164.1\|	2.4e-07	62.96	PREDICTED: splicing factor U2AF-associated protein 2 isoform X2 [Cucumis melo]	[more]
gi\|659083059\|ref\|XP_008442163.1\|	2.4e-07	62.96	PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Cucumis melo]	[more]
gi\|700199615\|gb\|KGN54773.1\|	5.4e-07	61.11	hypothetical protein Csa_4G491190 [Cucumis sativus]	[more]
gi\|778694873\|ref\|XP_011653887.1\|	5.4e-07	61.11	PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis sativus]	[more]
gi\|702263528\|ref\|XP_010038460.1\|	9.2e-07	61.11	PREDICTED: splicing factor U2AF-associated protein 2 isoform X2 [Eucalyptus gran...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G020560.1	CmoCh04G020560.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G020560	CmaCh04G019400	Cucurbita maxima (Rimu)	cmacmoB728

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G020560	Watermelon (97103) v2	cmowmbB699
CmoCh04G020560	Wax gourd	cmowgoB0902
CmoCh04G020560	Wax gourd	cmowgoB0914
CmoCh04G020560	Wild cucumber (PI 183967)	cmocpiB754
CmoCh04G020560	Cucumber (Chinese Long) v2	cmocuB745
CmoCh04G020560	Watermelon (Charleston Gray)	cmowcgB623
CmoCh04G020560	Watermelon (97103) v1	cmowmB733
CmoCh04G020560	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G020560	Cucurbita pepo (Zucchini)	cmocpeB680
CmoCh04G020560	Cucurbita pepo (Zucchini)	cmocpeB682
CmoCh04G020560	Bottle gourd (USVL1VR-Ls)	cmolsiB623
CmoCh04G020560	Melon (DHL92) v3.6.1	cmomedB746
CmoCh04G020560	Silver-seed gourd	carcmoB0992