CmoCh04G020530 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020530
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSuccinate dehydrogenase assembly factor 2, mitochondrial
LocationCmo_Chr04 : 11461190 .. 11462445 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAAGAAGAAAGGTATAGCCGATGAGAAGGTGAGGTGGGTAACAGATGAAGAAACGATGAAGTAAGGACTTGTTAGTGGTAACCGGTGGTGGAGGAAGCAGAAGGACAAAAGATTTGCAAATAATTAAAAAAAATGAACAACCTAACGACTCGACCCAACAAAAAATAGAGGGTTGGATTAGATTGTGACGTCTATTTAGATCATTCGGATCATCATTTTTGGATTGGTCCAATAATATTTCTCAACCCAACCTTACCGCGCAGACTCCTACTCATTTCTATCCCCATGGCCAGCTATTATAGGGCCTTCATGGCACTAGTCCACTAACTATTAAAATCAAGGGTAACCGCCAATGCCTAGTGACAAAGGGAATGGTGGAGGAGATAGTTTCATTAAGTGTGAAAGTTACAACAATGGGTAGTAAAATCGAGGGGAAGGGTTTGAGTTTAGTGTTCCTTACCACCAAAATAGGTGATTTCAGTTCAGTCCATCTGCGGAAACTGGGTATTGCTGATTTCAGTTCCTCATTTTTCTTTCTTTCTTTCTTTTAAATCTATTGTAAATGATCTTGAGGACTACTTTTTTGGATGCTGCTTATTTCTTTTGCAAGTTTCTGTATGTGTTCTTCTGTTGTTCAGGAAAATCCAGATCTATGGAAGTGGTTAACCGGGCAAGAGCAACCCCCTGAAGCCGTGAAGACAAATCCTGTGAGCATCCAAATTAGTGTTTCCCTTTTTATGTTTGGACTAAAAAATATGTGATCTTAGAATTAGAGCATCTATTTGTAGGTATTTACTGATGTGCAAGAGAAGGTGATGAACAATCTCAACAAACATGCCTCACCCGAGACACGAACACCGCCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAACCAGTAGCTCTATCTTCCATTAAAGAATTTTATGTTATAATTAAGTACTAAAGTTTCTCAAACTTGTTTGTTACGAACGGTGGGCTGTGAATAAGTTTCCCATCAAGTCTGTCCCCTCTAAACCCTTGGGATCTATAGTGAAATAATGGCTGTTTTTGTTTCTTTCACATACATTCACCAAATAATTCATCATTTCCAAGTGCTTGCCACCATGGCTAGCTTGCATTTCTTTATAGTTTGTACTTGATGTAATAAGCTTTGTATTAATTTTATAGTTTGCATTAGTATTACGACCTTCAATATCGGGTCATAAACCATCCG

mRNA sequence

ATGGAGGAAAGAAGAAAGGAAAATCCAGATCTATGGAAGTGGTTAACCGGGCAAGAGCAACCCCCTGAAGCCGTGAAGACAAATCCTGTATTTACTGATGTGCAAGAGAAGGTGATGAACAATCTCAACAAACATGCCTCACCCGAGACACGAACACCGCCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAACCAGTAGCTCTATCTTCCATTAAAGAATTTTATGTTATAATTAAGTACTAAAGTTTCTCAAACTTGTTTGTTACGAACGGTGGGCTGTGAATAAGTTTCCCATCAAGTCTGTCCCCTCTAAACCCTTGGGATCTATAGTGAAATAATGGCTGTTTTTGTTTCTTTCACATACATTCACCAAATAATTCATCATTTCCAAGTGCTTGCCACCATGGCTAGCTTGCATTTCTTTATAGTTTGTACTTGATGTAATAAGCTTTGTATTAATTTTATAGTTTGCATTAGTATTACGACCTTCAATATCGGGTCATAAACCATCCG

Coding sequence (CDS)

ATGGAGGAAAGAAGAAAGGAAAATCCAGATCTATGGAAGTGGTTAACCGGGCAAGAGCAACCCCCTGAAGCCGTGAAGACAAATCCTGTATTTACTGATGTGCAAGAGAAGGTGATGAACAATCTCAACAAACATGCCTCACCCGAGACACGAACACCGCCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAACCAGTAG
Homology
[Close]
BLAST of CmoCh04G020530 vs. Swiss-Prot
Match: SDAF2_ARATH (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana GN=SDHAF2 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.3e-29
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 1 

Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLT QEQPPEAV +NPVF+ + EKVM NLNKHA+PETR   GQ WVRGWDDFK
Sbjct: 118 ENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFK 177

Query: 67  RGRDGPITGNQ 78
           RGRD PI+GNQ
Sbjct: 178 RGRDAPISGNQ 188

[Close]
BLAST of CmoCh04G020530 vs. TrEMBL
Match: A0A0A0LKF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-33
Identity = 65/71 (91.55%), Postives = 70/71 (98.59%), Query Frame = 1 

Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLTGQEQPPEA+KTNPVFT V+EKV++NLNKHASPETRTPPGQQWVRGWDDFK
Sbjct: 195 ENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFK 254

Query: 67  RGRDGPITGNQ 78
           +GRDGPITGNQ
Sbjct: 255 KGRDGPITGNQ 265

[Close]
BLAST of CmoCh04G020530 vs. TrEMBL
Match: A0A068TQT2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022341001 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-28
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 1 

Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLTGQ QPPEAV+ NPVF DVQ++V+NNLN HASPETR  PGQ WVRGWDDFK
Sbjct: 111 ENPDLWKWLTGQGQPPEAVRMNPVFADVQKRVVNNLNSHASPETRATPGQPWVRGWDDFK 170

Query: 67  RGRDGPITGNQ 78
           +GRDGP  GNQ
Sbjct: 171 KGRDGPAVGNQ 181

[Close]
BLAST of CmoCh04G020530 vs. TrEMBL
Match: A0A067F365_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039261mg PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-28
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 1 

Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLTGQEQPPEAVKTNPVF+ +  KVMNNLN +ASPETR+ PGQ WVRGWDDFK
Sbjct: 112 ENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFK 171

Query: 67  RGRDGPITGNQ 78
           +GRD P++GNQ
Sbjct: 172 KGRDSPLSGNQ 182

[Close]
BLAST of CmoCh04G020530 vs. TrEMBL
Match: A0A059AZI1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01475 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-28
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1 

Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLT QEQPPEAVK NPVF+ VQ+KVMNNLN H++PETR  PGQ WVRGWDD K
Sbjct: 123 ENPDLWKWLTNQEQPPEAVKMNPVFSAVQKKVMNNLNSHSAPETRALPGQPWVRGWDDIK 182

Query: 67  RGRDGPITGNQ 78
           +GRDGPITGNQ
Sbjct: 183 KGRDGPITGNQ 193

[Close]
BLAST of CmoCh04G020530 vs. TrEMBL
Match: V4TAF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-28
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 1 

Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLTGQEQPPEAVKTNPVF+ +  KVMNNLN +ASPETR+ PGQ WVRGWDDFK
Sbjct: 112 ENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFK 171

Query: 67  RGRDGPITGNQ 78
           +GRD P++GNQ
Sbjct: 172 KGRDSPLSGNQ 182

[Close]
BLAST of CmoCh04G020530 vs. TAIR10
Match: AT5G51040.3 (AT5G51040.3 unknown protein)

HSP 1 Score: 127.1 bits (318), Expect = 4.7e-30
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 1 

Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLT QEQPPEAV +NPVF+ + EKVM NLNKHA+PETR   GQ WVRGWDDFK
Sbjct: 127 ENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFK 186

Query: 67  RGRDGPITGNQ 78
           RGRD PI+GNQ
Sbjct: 187 RGRDAPISGNQ 197

[Close]
BLAST of CmoCh04G020530 vs. NCBI nr
Match: gi|659082578|ref|XP_008441916.1| (PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 3.0e-34
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 1 

Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLTGQEQPPEA+KTNPVFT V+EKVMNNLNKHASPETRTPPGQQWVRGWDDFK
Sbjct: 130 ENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 189

Query: 67  RGRDGPITGNQ 78
           +GRDGPITGNQ
Sbjct: 190 KGRDGPITGNQ 200

[Close]
BLAST of CmoCh04G020530 vs. NCBI nr
Match: gi|449470271|ref|XP_004152841.1| (PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-33
Identity = 65/71 (91.55%), Postives = 70/71 (98.59%), Query Frame = 1 

Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLTGQEQPPEA+KTNPVFT V+EKV++NLNKHASPETRTPPGQQWVRGWDDFK
Sbjct: 128 ENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFK 187

Query: 67  RGRDGPITGNQ 78
           +GRDGPITGNQ
Sbjct: 188 KGRDGPITGNQ 198

[Close]
BLAST of CmoCh04G020530 vs. NCBI nr
Match: gi|700206113|gb|KGN61232.1| (hypothetical protein Csa_2G072460 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-33
Identity = 65/71 (91.55%), Postives = 70/71 (98.59%), Query Frame = 1 

Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLTGQEQPPEA+KTNPVFT V+EKV++NLNKHASPETRTPPGQQWVRGWDDFK
Sbjct: 195 ENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFK 254

Query: 67  RGRDGPITGNQ 78
           +GRDGPITGNQ
Sbjct: 255 KGRDGPITGNQ 265

[Close]
BLAST of CmoCh04G020530 vs. NCBI nr
Match: gi|697136457|ref|XP_009622307.1| (PREDICTED: uncharacterized protein LOC104113746 [Nicotiana tomentosiformis])

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-28
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 1 

Query: 2  EERRKENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRG 61
          E+ R+ENPDLWKWLTGQEQPP+A+ TNPVF+ V+EKVMNNL+KHASPETR  PG+ WVRG
Sbjct: 3  EKERQENPDLWKWLTGQEQPPDAIITNPVFSAVREKVMNNLDKHASPETRAVPGKPWVRG 62

Query: 62 WDDFKRGRDGPITGNQ 78
          WDD KRGRD PI GNQ
Sbjct: 63 WDDIKRGRDAPIAGNQ 78

[Close]
BLAST of CmoCh04G020530 vs. NCBI nr
Match: gi|629092845|gb|KCW58840.1| (hypothetical protein EUGRSUZ_H01475 [Eucalyptus grandis])

HSP 1 Score: 132.5 bits (332), Expect = 3.2e-28
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1 

Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLT QEQPPEAVK NPVF+ VQ+KVMNNLN H++PETR  PGQ WVRGWDD K
Sbjct: 123 ENPDLWKWLTNQEQPPEAVKMNPVFSAVQKKVMNNLNSHSAPETRALPGQPWVRGWDDIK 182

Query: 67  RGRDGPITGNQ 78
           +GRDGPITGNQ
Sbjct: 183 KGRDGPITGNQ 193

The following BLAST results are available for this feature:
BLAST of CmoCh04G020530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SDAF2_ARATH8.3e-2978.87Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana... [more]
BLAST of CmoCh04G020530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKF9_CUCSA2.3e-3391.55Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072460 PE=4 SV=1[more]
A0A068TQT2_COFCA2.2e-2880.28Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022341001 PE=4 SV=1[more]
A0A067F365_CITSI2.2e-2880.28Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039261mg PE=4 SV=1[more]
A0A059AZI1_EUCGR2.2e-2881.69Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01475 PE=4 SV=1[more]
V4TAF7_9ROSI2.2e-2880.28Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032866mg PE=4 SV=1[more]
BLAST of CmoCh04G020530 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51040.34.7e-3078.87 unknown protein[more]
BLAST of CmoCh04G020530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082578|ref|XP_008441916.1|3.0e-3494.37PREDICTED: uncharacterized protein LOC103485912 [Cucumis melo][more]
gi|449470271|ref|XP_004152841.1|3.3e-3391.55PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Cucumis sat... [more]
gi|700206113|gb|KGN61232.1|3.3e-3391.55hypothetical protein Csa_2G072460 [Cucumis sativus][more]
gi|697136457|ref|XP_009622307.1|1.1e-2877.63PREDICTED: uncharacterized protein LOC104113746 [Nicotiana tomentosiformis][more]
gi|629092845|gb|KCW58840.1|3.2e-2881.69hypothetical protein EUGRSUZ_H01475 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005631SDH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020530.1CmoCh04G020530.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005631Flavinator of succinate dehydrogenaseGENE3DG3DSA:1.10.150.250coord: 7..43
score: 4.
NoneNo IPR availablePANTHERPTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALcoord: 7..58
score: 5.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020530Watermelon (97103) v2cmowmbB699
CmoCh04G020530Wax gourdcmowgoB0902
CmoCh04G020530Wax gourdcmowgoB0906
CmoCh04G020530Wax gourdcmowgoB0914
CmoCh04G020530Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G020530Wild cucumber (PI 183967)cmocpiB754
CmoCh04G020530Cucumber (Chinese Long) v2cmocuB745
CmoCh04G020530Watermelon (Charleston Gray)cmowcgB623
CmoCh04G020530Watermelon (97103) v1cmowmB733
CmoCh04G020530Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020530Cucurbita pepo (Zucchini)cmocpeB680
CmoCh04G020530Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G020530Cucurbita pepo (Zucchini)cmocpeB686
CmoCh04G020530Bottle gourd (USVL1VR-Ls)cmolsiB623
CmoCh04G020530Melon (DHL92) v3.6.1cmomedB746
CmoCh04G020530Silver-seed gourdcarcmoB0992