CmoCh04G020380 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCmo_Chr04 : 11098485 .. 11098943 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCATCCCCAAACTTCAAGCTTCCATGGCTAAGTATGAAGCAAGTGAGATGATCAAGAAGCGTACTAGAAATGGTGATAATGTTCAACTAAAAGCTTTTAGTGGCATTGCTCGAGCTTCAACTCAAGTCAACAATCAAGGCATGGTACCGGAAATATTTAGAGATAATAAGAATGTCGGGCCCAAGCTTAGTTCAAATACTCAACTAAAGGCATCTAATATGCAATTTAGTCGAGAGCATTTGAAGGAGATTTTTAAATATCATGATAGCGACAAGGATGGTTTTCTCAATTTACGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGGTTCCTATGGCATGACATATGCTGATGCAGATAAAGATGGCCTTATTAGCGAGGTTGAACTTGACAAACTCATTGATTATGCCCAGAAATTTATGAAGAAAAAATGA

mRNA sequence

ATGTTCATCCCCAAACTTCAAGCTTCCATGGCTAAGTATGAAGCAAGTGAGATGATCAAGAAGCGTACTAGAAATGGTGATAATGTTCAACTAAAAGCTTTTAGTGGCATTGCTCGAGCTTCAACTCAAGTCAACAATCAAGGCATGGTACCGGAAATATTTAGAGATAATAAGAATGTCGGGCCCAAGCTTAGTTCAAATACTCAACTAAAGGCATCTAATATGCAATTTAGTCGAGAGCATTTGAAGGAGATTTTTAAATATCATGATAGCGACAAGGATGGTTTTCTCAATTTACGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGGTTCCTATGGCATGACATATGCTGATGCAGATAAAGATGGCCTTATTAGCGAGGTTGAACTTGACAAACTCATTGATTATGCCCAGAAATTTATGAAGAAAAAATGA

Coding sequence (CDS)

ATGTTCATCCCCAAACTTCAAGCTTCCATGGCTAAGTATGAAGCAAGTGAGATGATCAAGAAGCGTACTAGAAATGGTGATAATGTTCAACTAAAAGCTTTTAGTGGCATTGCTCGAGCTTCAACTCAAGTCAACAATCAAGGCATGGTACCGGAAATATTTAGAGATAATAAGAATGTCGGGCCCAAGCTTAGTTCAAATACTCAACTAAAGGCATCTAATATGCAATTTAGTCGAGAGCATTTGAAGGAGATTTTTAAATATCATGATAGCGACAAGGATGGTTTTCTCAATTTACGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGGTTCCTATGGCATGACATATGCTGATGCAGATAAAGATGGCCTTATTAGCGAGGTTGAACTTGACAAACTCATTGATTATGCCCAGAAATTTATGAAGAAAAAATGA
Homology
[Close]
BLAST of CmoCh04G020380 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.3e-42
Identity = 99/173 (57.23%), Postives = 120/173 (69.36%), Query Frame = 1 

Query: 1   MFIPKLQASMAKYEASEMIKKRTRNGDNVQLKAFSGIARASTQVN-NQGMVPEIFRDNKN 60
           M IP+LQ S AKYEAS+++KK  +NG+ V L AF+  AR STQ+N N+ M  +  + N +
Sbjct: 28  MHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDD 87

Query: 61  VGPKLSSNTQL--------------------KASNMQFSREHLKEIFKYHDSDKDGFLNL 120
           V  KLSSN QL                    KASNMQFSRE +KEIF+Y+DSD+DGFLN+
Sbjct: 88  VAHKLSSNAQLKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNI 147

Query: 121 RELTKAFAFLGSIIPFEKGSYGMTYADADKDGLISEVELDKLIDYAQKFMKKK 153
           RE+TKAFA LGSI PF K  +GM YAD +KDGLI E ELDKLI+YA KFMKKK
Sbjct: 148 REVTKAFALLGSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

[Close]
BLAST of CmoCh04G020380 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.3e-39
Identity = 95/176 (53.98%), Postives = 116/176 (65.91%), Query Frame = 1 

Query: 1   MFIPKLQASMAKYEASEMIKKRTRNGDNVQLKAFSGIARASTQVNN-QGMVPEIFRDNKN 60
           M+I  LQ S AKYEAS+++KK   N + V LKAF+GI  AST++NN Q M  EI     N
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60

Query: 61  --VGPKLSSNT---------------------QLKASNMQFSREHLKEIFKYHDSDKDGF 120
             V   L+SN                       +KASNMQFSRE +KEIF+YHDSD DGF
Sbjct: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120

Query: 121 LNLRELTKAFAFLGSIIPFEKGSYGMTYADADKDGLISEVELDKLIDYAQKFMKKK 153
           LNLRE+TKAFAFLG+I+P  K  +GM YADA+KDGLIS+ EL+KL+DYA KF  K+
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

[Close]
BLAST of CmoCh04G020380 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.7e-38
Identity = 92/172 (53.49%), Postives = 115/172 (66.86%), Query Frame = 1 

Query: 1   MFIPKLQASMAKYEASEMIKKRTRNGDNVQLKAFSGIARASTQVNNQGMVPEIFRDNKNV 60
           M+I KLQASMA YEAS +IK+  +NGD V++KAF  + R+STQ+ N+  V +I + +  V
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLKILKPSDGV 60

Query: 61  GPKLSSNTQL--------------------KASNMQFSREHLKEIFKYHDSDKDGFLNLR 120
             KL S   +                    K+SNM  SRE +KEIF+YHD++ DGFLN  
Sbjct: 61  AHKLRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRM 120

Query: 121 ELTKAFAFLGSIIPFEKGSYGMTYADADKDGLISEVELDKLIDYAQKFMKKK 153
           ELTKAFAFLGS+ PF K  YGM YADA++DGLISE ELDKLIDYA K +KKK
Sbjct: 121 ELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

[Close]
BLAST of CmoCh04G020380 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 91/172 (52.91%), Postives = 115/172 (66.86%), Query Frame = 1 

Query: 1   MFIPKLQASMAKYEASEMIKKRTRNGDNV----QLKAFSGIARASTQVNNQGMVPE--IF 60
           M +  LQA  AK EA+E+IKK  RNGD V    +L++F   AR STQ+NN   V    + 
Sbjct: 1   MSVSHLQA-WAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVP 60

Query: 61  RDNKNVGPKLSSNTQL--------------KASNMQFSREHLKEIFKYHDSDKDGFLNLR 120
           + N+N+  K+SSNT +              K SN+  SRE +KEIFKYHDS+KDGFL++R
Sbjct: 61  KTNENLAQKVSSNTCITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIR 120

Query: 121 ELTKAFAFLGSIIPFEKGSYGMTYADADKDGLISEVELDKLIDYAQKFMKKK 153
           ELTKAF+ +GSI+PF K  Y M YAD D+DGL+SE ELDKLIDYA K +KKK
Sbjct: 121 ELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

[Close]
BLAST of CmoCh04G020380 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1 

Query: 73  SNMQFSREHLKEIFKYHDSDKDGFLNLRELTKAFAFLGSIIPFEKGSYGMTYADADKDGL 132
           S   FSRE +KEIF+ HD D DG+L++ EL KA  FLG  IPF K  YGM Y D + DGL
Sbjct: 7   SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 133 ISEVELDKLIDYAQKFMKKK 153
           ISE ELDKLIDYA++F K++
Sbjct: 67  ISEDELDKLIDYAERFQKRR 86

[Close]
BLAST of CmoCh04G020380 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 7.6e-42
Identity = 99/173 (57.23%), Postives = 120/173 (69.36%), Query Frame = 1 

Query: 1   MFIPKLQASMAKYEASEMIKKRTRNGDNVQLKAFSGIARASTQVN-NQGMVPEIFRDNKN 60
           M IP+LQ S AKYEAS+++KK  +NG+ V L AF+  AR STQ+N N+ M  +  + N +
Sbjct: 28  MHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDD 87

Query: 61  VGPKLSSNTQL--------------------KASNMQFSREHLKEIFKYHDSDKDGFLNL 120
           V  KLSSN QL                    KASNMQFSRE +KEIF+Y+DSD+DGFLN+
Sbjct: 88  VAHKLSSNAQLKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNI 147

Query: 121 RELTKAFAFLGSIIPFEKGSYGMTYADADKDGLISEVELDKLIDYAQKFMKKK 153
           RE+TKAFA LGSI PF K  +GM YAD +KDGLI E ELDKLI+YA KFMKKK
Sbjct: 148 REVTKAFALLGSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

[Close]
BLAST of CmoCh04G020380 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 1.3e-38
Identity = 95/176 (53.98%), Postives = 116/176 (65.91%), Query Frame = 1 

Query: 1   MFIPKLQASMAKYEASEMIKKRTRNGDNVQLKAFSGIARASTQVNN-QGMVPEIFRDNKN 60
           M+I  LQ S AKYEAS+++KK   N + V LKAF+GI  AST++NN Q M  EI     N
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60

Query: 61  --VGPKLSSNT---------------------QLKASNMQFSREHLKEIFKYHDSDKDGF 120
             V   L+SN                       +KASNMQFSRE +KEIF+YHDSD DGF
Sbjct: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120

Query: 121 LNLRELTKAFAFLGSIIPFEKGSYGMTYADADKDGLISEVELDKLIDYAQKFMKKK 153
           LNLRE+TKAFAFLG+I+P  K  +GM YADA+KDGLIS+ EL+KL+DYA KF  K+
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

[Close]
BLAST of CmoCh04G020380 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 3.9e-38
Identity = 92/172 (53.49%), Postives = 115/172 (66.86%), Query Frame = 1 

Query: 1   MFIPKLQASMAKYEASEMIKKRTRNGDNVQLKAFSGIARASTQVNNQGMVPEIFRDNKNV 60
           M+I KLQASMA YEAS +IK+  +NGD V++KAF  + R+STQ+ N+  V +I + +  V
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLKILKPSDGV 60

Query: 61  GPKLSSNTQL--------------------KASNMQFSREHLKEIFKYHDSDKDGFLNLR 120
             KL S   +                    K+SNM  SRE +KEIF+YHD++ DGFLN  
Sbjct: 61  AHKLRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRM 120

Query: 121 ELTKAFAFLGSIIPFEKGSYGMTYADADKDGLISEVELDKLIDYAQKFMKKK 153
           ELTKAFAFLGS+ PF K  YGM YADA++DGLISE ELDKLIDYA K +KKK
Sbjct: 121 ELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

[Close]
BLAST of CmoCh04G020380 vs. NCBI nr
Match: gi|449470190|ref|XP_004152801.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 91/172 (52.91%), Postives = 115/172 (66.86%), Query Frame = 1 

Query: 1   MFIPKLQASMAKYEASEMIKKRTRNGDNV----QLKAFSGIARASTQVNNQGMVPE--IF 60
           M +  LQA  AK EA+E+IKK  RNGD V    +L++F   AR STQ+NN   V    + 
Sbjct: 1   MSVSHLQA-WAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVP 60

Query: 61  RDNKNVGPKLSSNTQL--------------KASNMQFSREHLKEIFKYHDSDKDGFLNLR 120
           + N+N+  K+SSNT +              K SN+  SRE +KEIFKYHDS+KDGFL++R
Sbjct: 61  KTNENLAQKVSSNTCITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIR 120

Query: 121 ELTKAFAFLGSIIPFEKGSYGMTYADADKDGLISEVELDKLIDYAQKFMKKK 153
           ELTKAF+ +GSI+PF K  Y M YAD D+DGL+SE ELDKLIDYA K +KKK
Sbjct: 121 ELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

[Close]
BLAST of CmoCh04G020380 vs. NCBI nr
Match: gi|659089539|ref|XP_008445564.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 2.7e-31
Identity = 87/171 (50.88%), Postives = 111/171 (64.91%), Query Frame = 1 

Query: 1   MFIPKLQASMAKYEASEMIKKRTRNGDNV----QLKAFSGIARAST-QVNNQGMVPEIFR 60
           M +  LQA  AK EASE+IKK  RNGD V    +L++F   AR    +  +   +P   +
Sbjct: 1   MSVSHLQA-WAKIEASELIKKYDRNGDGVLTKEELQSFLHDARLKNIRFVSSSTIP---K 60

Query: 61  DNKNVGPKLSSNTQLKA--------------SNMQFSREHLKEIFKYHDSDKDGFLNLRE 120
            N+N+  K+SSNT++K               SN+  SRE +KEIFKYHDS+KDGFL++RE
Sbjct: 61  TNENLDQKVSSNTRIKPKKQLLDKAQDSLRQSNVPLSREQIKEIFKYHDSNKDGFLSIRE 120

Query: 121 LTKAFAFLGSIIPFEKGSYGMTYADADKDGLISEVELDKLIDYAQKFMKKK 153
           LTKAF  LGSI+PF K  + M YAD D+DGLISE EL KLIDYA+K +KKK
Sbjct: 121 LTKAFGSLGSIVPFAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167

The following BLAST results are available for this feature:
BLAST of CmoCh04G020380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G020380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLF3_CUCSA5.3e-4257.23Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1[more]
A0A0A0KIY4_CUCSA9.3e-3953.98Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
A0A0A0KMQ1_CUCSA2.7e-3853.49Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1[more]
A0A0A0LRC8_CUCSA1.1e-3452.91Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA1.8e-1860.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
BLAST of CmoCh04G020380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G020380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194512|gb|KGN49689.1|7.6e-4257.23hypothetical protein Csa_5G067670 [Cucumis sativus][more]
gi|700194513|gb|KGN49690.1|1.3e-3853.98hypothetical protein Csa_5G068170 [Cucumis sativus][more]
gi|700194510|gb|KGN49687.1|3.9e-3853.49hypothetical protein Csa_5G067410 [Cucumis sativus][more]
gi|449470190|ref|XP_004152801.1|1.5e-3452.91PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus][more]
gi|659089539|ref|XP_008445564.1|2.7e-3150.88PREDICTED: probable calcium-binding protein CML11 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020380.1CmoCh04G020380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 82..109
score: 3.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 77..112
score: 12.923coord: 126..148
score:
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 6..142
score: 7.7
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 72..139
score: 1.98
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 90..102
score: -coord: 126..138
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 69..145
score: 3.4
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 69..145
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020380Watermelon (97103) v2cmowmbB699
CmoCh04G020380Watermelon (97103) v2cmowmbB712
CmoCh04G020380Wax gourdcmowgoB0906
CmoCh04G020380Wax gourdcmowgoB0914
CmoCh04G020380Cucumber (Gy14) v1cgycmoB0765
CmoCh04G020380Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G020380Wild cucumber (PI 183967)cmocpiB741
CmoCh04G020380Wild cucumber (PI 183967)cmocpiB754
CmoCh04G020380Cucumber (Chinese Long) v2cmocuB745
CmoCh04G020380Melon (DHL92) v3.5.1cmomeB656
CmoCh04G020380Watermelon (Charleston Gray)cmowcgB623
CmoCh04G020380Watermelon (97103) v1cmowmB733
CmoCh04G020380Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020380Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G020380Cucurbita pepo (Zucchini)cmocpeB686
CmoCh04G020380Bottle gourd (USVL1VR-Ls)cmolsiB623
CmoCh04G020380Cucumber (Gy14) v2cgybcmoB645
CmoCh04G020380Melon (DHL92) v3.6.1cmomedB723
CmoCh04G020380Melon (DHL92) v3.6.1cmomedB746