CmoCh04G020340 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCmo_Chr04 : 11042818 .. 11043332 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTGAGGTTTTTTCATCTTCAACCTTTCCTTACAAACAAATATAGCATTGGTATAGCAATGTTTATCACCAAACTTCCACTTTCATGGCTAAGTAAGAAGCAAGTGAGATGATGAAGAGGTATTCTAGAAATGGGGATGATGTTTAACTAAAATCTTTTATTGCTCGAGATTCAACTCAAGTCAACAATTAAGGCAAGATATCGGAAATCCTAAAAGATAATTAGAATGTTGGGCTCAAGCTTAGTTCAAATACTCACCCAAAGACATCTAAGTTGCAATTTAGTCGAGAACAGATGAAGGAGATCTTTAAATATCATGATAGCGATAAAGATGGTTTTCTCAATTTAAGGGAGTTAACAAAAGCTTTTGCTTTCCTAGGCACAATTATCCCATTTGAGAAAGCTTCGTATGACATGACATATGCTGATGCAAATAAAGATGGTCTTATTAGCGAGGCTGAACTTGACAAACTCGTTGATTATGCTCAGAAATTTATGAAGAAAAAATGA

mRNA sequence

ATGGGGTTGAGGTTTTTTCATCTTCAACCTTTCCTTACAAACAAATATAGCATTGGTATAGCAATGTTTATCACCAAACTTCCACTTTCATGGCTAAGTAAGAAGCAAAATGTTGGGCTCAAGCTTAGTTCAAATACTCACCCAAAGACATCTAAGTTGCAATTTAGTCGAGAACAGATGAAGGAGATCTTTAAATATCATGATAGCGATAAAGATGGTTTTCTCAATTTAAGGGAGTTAACAAAAGCTTTTGCTTTCCTAGGCACAATTATCCCATTTGAGAAAGCTTCGTATGACATGACATATGCTGATGCAAATAAAGATGGTCTTATTAGCGAGGCTGAACTTGACAAACTCGTTGATTATGCTCAGAAATTTATGAAGAAAAAATGA

Coding sequence (CDS)

ATGGGGTTGAGGTTTTTTCATCTTCAACCTTTCCTTACAAACAAATATAGCATTGGTATAGCAATGTTTATCACCAAACTTCCACTTTCATGGCTAAGTAAGAAGCAAAATGTTGGGCTCAAGCTTAGTTCAAATACTCACCCAAAGACATCTAAGTTGCAATTTAGTCGAGAACAGATGAAGGAGATCTTTAAATATCATGATAGCGATAAAGATGGTTTTCTCAATTTAAGGGAGTTAACAAAAGCTTTTGCTTTCCTAGGCACAATTATCCCATTTGAGAAAGCTTCGTATGACATGACATATGCTGATGCAAATAAAGATGGTCTTATTAGCGAGGCTGAACTTGACAAACTCGTTGATTATGCTCAGAAATTTATGAAGAAAAAATGA
Homology
[Close]
BLAST of CmoCh04G020340 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.5e-26
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 49  KTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFLGTIIPFEKASYDMTYADANKD 108
           K S +QFSREQ+KEIF+YHDSD DGFLNLRE+TKAFAFLGTI+P  KA + M YADANKD
Sbjct: 95  KASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKD 154

Query: 109 GLISEAELDKLVDYAQKFMKKK 131
           GLIS+ EL+KLVDYA KF  K+
Sbjct: 155 GLISKDELEKLVDYAYKFFNKR 176

[Close]
BLAST of CmoCh04G020340 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.9e-26
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 49  KTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFLGTIIPFEKASYDMTYADANKD 108
           K S +QFSREQ+KEIF+Y+DSD+DGFLN+RE+TKAFA LG+I PF KA + M YAD NKD
Sbjct: 119 KASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALLGSIFPFNKAYHGMVYADTNKD 178

Query: 109 GLISEAELDKLVDYAQKFMKKK 131
           GLI E ELDKL++YA KFMKKK
Sbjct: 179 GLIGEDELDKLINYANKFMKKK 200

[Close]
BLAST of CmoCh04G020340 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-24
Identity = 62/109 (56.88%), Postives = 79/109 (72.48%), Query Frame = 1 

Query: 36  QNVGLKLSSNT--------------HPKTSKLQFSREQMKEIFKYHDSDKDGFLNLRELT 95
           +N+  K+SSNT                K S +  SREQ+KEIFKYHDS+KDGFL++RELT
Sbjct: 63  ENLAQKVSSNTCITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIRELT 122

Query: 96  KAFAFLGTIIPFEKASYDMTYADANKDGLISEAELDKLVDYAQKFMKKK 131
           KAF+ +G+I+PF KA Y M YAD ++DGL+SEAELDKL+DYA K +KKK
Sbjct: 123 KAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

[Close]
BLAST of CmoCh04G020340 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 49  KTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFLGTIIPFEKASYDMTYADANKD 108
           K+S +  SRE++KEIF+YHD++ DGFLN  ELTKAFAFLG++ PF KA Y M YADAN+D
Sbjct: 90  KSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGMVYADANED 149

Query: 109 GLISEAELDKLVDYAQKFMKKK 131
           GLISEAELDKL+DYA K +KKK
Sbjct: 150 GLISEAELDKLIDYASKIIKKK 171

[Close]
BLAST of CmoCh04G020340 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-20
Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 1 

Query: 48  PKTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFLGTIIPFEKASYDMTYADANK 107
           P  SK  FSRE+MKEIF+ HD D DG+L++ EL KA  FLG  IPF KA Y M Y D N 
Sbjct: 4   PGVSKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENG 63

Query: 108 DGLISEAELDKLVDYAQKFMKKK 131
           DGLISE ELDKL+DYA++F K++
Sbjct: 64  DGLISEDELDKLIDYAERFQKRR 86

[Close]
BLAST of CmoCh04G020340 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-26
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 49  KTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFLGTIIPFEKASYDMTYADANKD 108
           K S +QFSREQ+KEIF+YHDSD DGFLNLRE+TKAFAFLGTI+P  KA + M YADANKD
Sbjct: 95  KASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKD 154

Query: 109 GLISEAELDKLVDYAQKFMKKK 131
           GLIS+ EL+KLVDYA KF  K+
Sbjct: 155 GLISKDELEKLVDYAYKFFNKR 176

[Close]
BLAST of CmoCh04G020340 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 8.5e-26
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 49  KTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFLGTIIPFEKASYDMTYADANKD 108
           K S +QFSREQ+KEIF+Y+DSD+DGFLN+RE+TKAFA LG+I PF KA + M YAD NKD
Sbjct: 119 KASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALLGSIFPFNKAYHGMVYADTNKD 178

Query: 109 GLISEAELDKLVDYAQKFMKKK 131
           GLI E ELDKL++YA KFMKKK
Sbjct: 179 GLIGEDELDKLINYANKFMKKK 200

[Close]
BLAST of CmoCh04G020340 vs. NCBI nr
Match: gi|449470190|ref|XP_004152801.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-24
Identity = 62/109 (56.88%), Postives = 79/109 (72.48%), Query Frame = 1 

Query: 36  QNVGLKLSSNT--------------HPKTSKLQFSREQMKEIFKYHDSDKDGFLNLRELT 95
           +N+  K+SSNT                K S +  SREQ+KEIFKYHDS+KDGFL++RELT
Sbjct: 63  ENLAQKVSSNTCITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIRELT 122

Query: 96  KAFAFLGTIIPFEKASYDMTYADANKDGLISEAELDKLVDYAQKFMKKK 131
           KAF+ +G+I+PF KA Y M YAD ++DGL+SEAELDKL+DYA K +KKK
Sbjct: 123 KAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

[Close]
BLAST of CmoCh04G020340 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-24
Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 49  KTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFLGTIIPFEKASYDMTYADANKD 108
           K+S +  SRE++KEIF+YHD++ DGFLN  ELTKAFAFLG++ PF KA Y M YADAN+D
Sbjct: 90  KSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGMVYADANED 149

Query: 109 GLISEAELDKLVDYAQKFMKKK 131
           GLISEAELDKL+DYA K +KKK
Sbjct: 150 GLISEAELDKLIDYASKIIKKK 171

[Close]
BLAST of CmoCh04G020340 vs. NCBI nr
Match: gi|659089539|ref|XP_008445564.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-23
Identity = 62/109 (56.88%), Postives = 78/109 (71.56%), Query Frame = 1 

Query: 36  QNVGLKLSSNTHPKTSK--------------LQFSREQMKEIFKYHDSDKDGFLNLRELT 95
           +N+  K+SSNT  K  K              +  SREQ+KEIFKYHDS+KDGFL++RELT
Sbjct: 59  ENLDQKVSSNTRIKPKKQLLDKAQDSLRQSNVPLSREQIKEIFKYHDSNKDGFLSIRELT 118

Query: 96  KAFAFLGTIIPFEKASYDMTYADANKDGLISEAELDKLVDYAQKFMKKK 131
           KAF  LG+I+PF KA + M YAD ++DGLISEAEL KL+DYA+K +KKK
Sbjct: 119 KAFGSLGSIVPFAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167

The following BLAST results are available for this feature:
BLAST of CmoCh04G020340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G020340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIY4_CUCSA3.5e-2674.39Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
A0A0A0KLF3_CUCSA5.9e-2671.95Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1[more]
A0A0A0LRC8_CUCSA1.5e-2456.88Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1[more]
A0A0A0KMQ1_CUCSA1.9e-2469.51Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA3.7e-2061.45Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
BLAST of CmoCh04G020340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G020340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194513|gb|KGN49690.1|5.0e-2674.39hypothetical protein Csa_5G068170 [Cucumis sativus][more]
gi|700194512|gb|KGN49689.1|8.5e-2671.95hypothetical protein Csa_5G067670 [Cucumis sativus][more]
gi|449470190|ref|XP_004152801.1|2.1e-2456.88PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus][more]
gi|700194510|gb|KGN49687.1|2.7e-2469.51hypothetical protein Csa_5G067410 [Cucumis sativus][more]
gi|659089539|ref|XP_008445564.1|1.0e-2356.88PREDICTED: probable calcium-binding protein CML11 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020340.1CmoCh04G020340.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 103..120
score: 0.
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 60..87
score: 2.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 104..126
score: 6.703coord: 55..90
score: 12
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 51..119
score: 1.0
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 51..118
score: 1.69
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 104..116
score: -coord: 68..80
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 51..123
score: 8.9
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 51..123
score: 8.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020340Melon (DHL92) v3.6.1cmomedB723
CmoCh04G020340Melon (DHL92) v3.6.1cmomedB746
CmoCh04G020340Watermelon (97103) v2cmowmbB699
CmoCh04G020340Watermelon (97103) v2cmowmbB712
CmoCh04G020340Wax gourdcmowgoB0906
CmoCh04G020340Wax gourdcmowgoB0914
CmoCh04G020340Cucumber (Gy14) v1cgycmoB0765
CmoCh04G020340Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G020340Wild cucumber (PI 183967)cmocpiB741
CmoCh04G020340Wild cucumber (PI 183967)cmocpiB754
CmoCh04G020340Cucumber (Chinese Long) v2cmocuB745
CmoCh04G020340Melon (DHL92) v3.5.1cmomeB656
CmoCh04G020340Watermelon (Charleston Gray)cmowcgB623
CmoCh04G020340Watermelon (97103) v1cmowmB733
CmoCh04G020340Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020340Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G020340Cucurbita pepo (Zucchini)cmocpeB686
CmoCh04G020340Bottle gourd (USVL1VR-Ls)cmolsiB623
CmoCh04G020340Cucumber (Gy14) v2cgybcmoB645