CmoCh04G020150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G020150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Protein neuralized) (RING/U-box protein)
Location	Cmo_Chr04 : 10749943 .. 10750652 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAACCTACAGAGAATGTTGGAGACATGCATGGACATGCGACTTGAGCTGCAGCGCTCAATTAAGCAAGAAGTTTCTTCTGCACTGAACCGAACAGCTGGTTCAGAAGGTATGCCTTCATTCTCAATGTAGCTGAATTCTTTAGTTTTAGATTTGATCAATTAACAAGCTGCCTGGGGAACCCACCCCACCCCCTAGAAAAAGATACAACATGGTACTTGATTTGCAGAGGTGCATACCTTAATCTAAGTGATTTCATGAGTAATTTAAGTAGTTTTTGTGCTTCTTGGTTGTGGATATTATATTTTTCCAAAATTCGACATGGACTTTTTATTTTTTTTTAATGTGGTTCCTGCCCTGTACCACCGAAATATATCATACTTTACTCAAATGGTTATTCAGCATGGGTGGAGGGAGGGAAGACAGTTTGCCAGACGAAGAACCCAAATGAGACCGAGTAAGGAAAGGAATTTGTTGTACATGTTGTGATAACCATATTGATGCTTTGTTGTATAGGTAATTCTAGCAAATTATCAGACCATTTTTGTGTGCTTTTCTCTAGTTCCAAGTTTCATTTAACTTATATTTTCTCCTTTTGGCACATGTGCACATGTTCAAAATGTGCTAACGAGTTGGTCGAAGCAAGAGAAAAGTGTCCGACATGTCATGCGCCTATTCTAGAAGTGATTCGTGCTTACTCTTTATGA

mRNA sequence

ATGAGCAACCTACAGAGAATGTTGGAGACATGCATGGACATGCGACTTGAGCTGCAGCGCTCAATTAAGCAAGAAGTTTCTTCTGCACTGAACCGAACAGCTGGTTCAGAAGCATGGGTGGAGGGAGGGAAGACAGTTTGCCAGACGAAGAACCCAAATGAGACCGATTCCAAGTTTCATTTAACTTATATTTTCTCCTTTTGGCACATGTGCACATGTTCAAAATGTGCTAACGAGTTGGTCGAAGCAAGAGAAAAGTGTCCGACATGTCATGCGCCTATTCTAGAAGTGATTCGTGCTTACTCTTTATGA

Coding sequence (CDS)

ATGAGCAACCTACAGAGAATGTTGGAGACATGCATGGACATGCGACTTGAGCTGCAGCGCTCAATTAAGCAAGAAGTTTCTTCTGCACTGAACCGAACAGCTGGTTCAGAAGCATGGGTGGAGGGAGGGAAGACAGTTTGCCAGACGAAGAACCCAAATGAGACCGATTCCAAGTTTCATTTAACTTATATTTTCTCCTTTTGGCACATGTGCACATGTTCAAAATGTGCTAACGAGTTGGTCGAAGCAAGAGAAAAGTGTCCGACATGTCATGCGCCTATTCTAGAAGTGATTCGTGCTTACTCTTTATGA

Homology

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BLAST of CmoCh04G020150 vs. TrEMBL
Match: A0A0A0KDG6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G149350 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.3e-27
Identity = 72/115 (62.61%), Postives = 78/115 (67.83%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA------------WVEGGKTVCQ 60
           MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C 
Sbjct: 732 MSNLQRMLETCMDMQLELQRSIKQEVSSALNRAAGSEEMFEDSLPDDEPKWDRVRKGICC 791

Query: 61  TKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL 104
               N  D+      ++   HMCTCSKCANELV+AR KCP CHAPILEVIRAYSL
Sbjct: 792 ICCDNHIDA-----LLYRCGHMCTCSKCANELVDARGKCPMCHAPILEVIRAYSL 841

[Close]

BLAST of CmoCh04G020150 vs. TrEMBL
Match: A0A067LI90_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05416 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.3e-23
Identity = 61/115 (53.04%), Postives = 75/115 (65.22%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEAWVEGG------------KTVCQ 60
           M+N+QRMLE CMDM+LELQRSI+QEVS+ALNR AGS    + G            K +C 
Sbjct: 727 MNNMQRMLEACMDMQLELQRSIRQEVSAALNRAAGSSEMCDNGLPEDRAKWDHVRKGICS 786

Query: 61  TKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL 104
               +  DS      ++   HMCTCSKCANELV+  EKCP C AP++EVIRAYS+
Sbjct: 787 ICCSSNIDS-----LLYRCGHMCTCSKCANELVQKGEKCPMCRAPVIEVIRAYSI 836

[Close]

BLAST of CmoCh04G020150 vs. TrEMBL
Match: W9SSP9_9ROSA (Protein neuralized OS=Morus notabilis GN=L484_011768 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-22
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEAWVEGGKTVCQTKNPNETDSKFH 60
           M+NLQRM+ETCMDM+LELQRSI+QEVS+ALNRT+G +        VC+   P++     H
Sbjct: 754 MNNLQRMMETCMDMQLELQRSIRQEVSAALNRTSGCQG-------VCEVGLPSDDSKWDH 813

Query: 61  L--------------TYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL 104
           +              + ++   HMCTC+KCA ELVE+R KCP C AP++EVIRAYS+
Sbjct: 814 VRKGICCICCDSNIDSLLYRCGHMCTCAKCATELVESRGKCPMCRAPVIEVIRAYSI 863

[Close]

BLAST of CmoCh04G020150 vs. TrEMBL
Match: A0A0D2RRV4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G233800 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.0e-22
Identity = 61/110 (55.45%), Postives = 73/110 (66.36%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEAWVEGG-------KTVCQTKNPN 60
           MSN+QRMLE CMDM+LELQRS++QEVS+ALNR+AG +   E G       K  C     +
Sbjct: 759 MSNMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEKETSEDGSKWGHVRKGTCCVCCDS 818

Query: 61  ETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL 104
             DS      ++   HMCTCSKCANELV    KCP C API+EVIRAYS+
Sbjct: 819 HIDS-----LLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSI 863

[Close]

BLAST of CmoCh04G020150 vs. TrEMBL
Match: A0A0D2TCK1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G233800 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.0e-22
Identity = 61/110 (55.45%), Postives = 73/110 (66.36%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEAWVEGG-------KTVCQTKNPN 60
           MSN+QRMLE CMDM+LELQRS++QEVS+ALNR+AG +   E G       K  C     +
Sbjct: 758 MSNMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEKETSEDGSKWGHVRKGTCCVCCDS 817

Query: 61  ETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL 104
             DS      ++   HMCTCSKCANELV    KCP C API+EVIRAYS+
Sbjct: 818 HIDS-----LLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSI 862

[Close]

BLAST of CmoCh04G020150 vs. TAIR10
Match: AT5G04460.1 (AT5G04460.1 RING/U-box superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-24
Identity = 59/114 (51.75%), Postives = 71/114 (62.28%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA-----------WVEGGKTVCQT 60
           MS +QRMLE CMDM+LELQRS++QEVS+ALNR+AG +            W    K  C  
Sbjct: 754 MSQMQRMLEACMDMQLELQRSVRQEVSAALNRSAGDQGMSAETSEDGSRWSHVSKGTCCV 813

Query: 61  KNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL 104
              N  D+      ++   HMCTCSKCANELV    KCP C API+EVIRAYS+
Sbjct: 814 CCDNHIDA-----LLYRCGHMCTCSKCANELVRNGGKCPLCRAPIIEVIRAYSI 862

[Close]

BLAST of CmoCh04G020150 vs. TAIR10
Match: AT2G27950.1 (AT2G27950.1 Ring/U-Box superfamily protein)

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-20
Identity = 55/114 (48.25%), Postives = 71/114 (62.28%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNR----------TAGSEA-WVEGGKTVCQT 60
           M NLQRMLE CM+M+LELQRSI+QEVS+A++R          TA  E+ W    K +C  
Sbjct: 730 MDNLQRMLEACMEMQLELQRSIRQEVSAAMHRSTDQPGPSKDTASYESKWEYVRKGICCV 789

Query: 61  KNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL 104
              +  DS      ++   HM TC KCA +LVEA  KCP C AP++EV+RAYS+
Sbjct: 790 CCESNIDS-----LLYRCGHMNTCEKCAKKLVEAGGKCPMCQAPVIEVVRAYSI 838

[Close]

BLAST of CmoCh04G020150 vs. TAIR10
Match: AT2G34920.1 (AT2G34920.1 RING/U-box superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 4.7e-09
Identity = 37/101 (36.63%), Postives = 52/101 (51.49%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEAWVEGGKTVCQTKNPNETDSKFH 60
           MS L+  ++TC+D+   LQ+S+  E  +   R             VC     NET  +  
Sbjct: 567 MSELRDSVKTCLDVNASLQKSVHLE--NPFKRKC----------CVC-----NETQVE-- 626

Query: 61  LTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAY 102
            T ++   HMCTC +CANEL     KCP CHA IL+V+R +
Sbjct: 627 -TLLYRCGHMCTCLRCANELQYNGGKCPICHAKILDVVRVF 647

[Close]

BLAST of CmoCh04G020150 vs. NCBI nr
Match: gi|449456168|ref|XP_004145822.1| (PREDICTED: uncharacterized protein LOC101214410 isoform X2 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 72/115 (62.61%), Postives = 78/115 (67.83%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA------------WVEGGKTVCQ 60
           MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C 
Sbjct: 732 MSNLQRMLETCMDMQLELQRSIKQEVSSALNRAAGSEEMFEDSLPDDEPKWDRVRKGICC 791

Query: 61  TKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL 104
               N  D+      ++   HMCTCSKCANELV+AR KCP CHAPILEVIRAYSL
Sbjct: 792 ICCDNHIDA-----LLYRCGHMCTCSKCANELVDARGKCPMCHAPILEVIRAYSL 841

[Close]

BLAST of CmoCh04G020150 vs. NCBI nr
Match: gi|778713418|ref|XP_011657046.1| (PREDICTED: uncharacterized protein LOC101214410 isoform X1 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 72/115 (62.61%), Postives = 78/115 (67.83%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA------------WVEGGKTVCQ 60
           MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C 
Sbjct: 733 MSNLQRMLETCMDMQLELQRSIKQEVSSALNRAAGSEEMFEDSLPDDEPKWDRVRKGICC 792

Query: 61  TKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL 104
               N  D+      ++   HMCTCSKCANELV+AR KCP CHAPILEVIRAYSL
Sbjct: 793 ICCDNHIDA-----LLYRCGHMCTCSKCANELVDARGKCPMCHAPILEVIRAYSL 842

[Close]

BLAST of CmoCh04G020150 vs. NCBI nr
Match: gi|659130940|ref|XP_008465430.1| (PREDICTED: uncharacterized protein LOC103503044 isoform X2 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 72/115 (62.61%), Postives = 78/115 (67.83%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA------------WVEGGKTVCQ 60
           MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C 
Sbjct: 735 MSNLQRMLETCMDMQLELQRSIKQEVSSALNRAAGSEEMFEDSLPDDEPKWDRVRKGICC 794

Query: 61  TKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL 104
               N  D+      ++   HMCTCSKCANELV+AR KCP CHAPILEVIRAYSL
Sbjct: 795 ICCDNHIDA-----LLYRCGHMCTCSKCANELVDARGKCPMCHAPILEVIRAYSL 844

[Close]

BLAST of CmoCh04G020150 vs. NCBI nr
Match: gi|659130942|ref|XP_008465431.1| (PREDICTED: probable GPI-anchored adhesin-like protein PGA55 isoform X3 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 72/115 (62.61%), Postives = 78/115 (67.83%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA------------WVEGGKTVCQ 60
           MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C 
Sbjct: 721 MSNLQRMLETCMDMQLELQRSIKQEVSSALNRAAGSEEMFEDSLPDDEPKWDRVRKGICC 780

Query: 61  TKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL 104
               N  D+      ++   HMCTCSKCANELV+AR KCP CHAPILEVIRAYSL
Sbjct: 781 ICCDNHIDA-----LLYRCGHMCTCSKCANELVDARGKCPMCHAPILEVIRAYSL 830

[Close]

BLAST of CmoCh04G020150 vs. NCBI nr
Match: gi|659130938|ref|XP_008465429.1| (PREDICTED: uncharacterized protein LOC103503044 isoform X1 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 72/115 (62.61%), Postives = 78/115 (67.83%), Query Frame = 1


Query: 1   MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA------------WVEGGKTVCQ 60
           MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C 
Sbjct: 736 MSNLQRMLETCMDMQLELQRSIKQEVSSALNRAAGSEEMFEDSLPDDEPKWDRVRKGICC 795

Query: 61  TKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL 104
               N  D+      ++   HMCTCSKCANELV+AR KCP CHAPILEVIRAYSL
Sbjct: 796 ICCDNHIDA-----LLYRCGHMCTCSKCANELVDARGKCPMCHAPILEVIRAYSL 845

The following BLAST results are available for this feature:

BLAST of CmoCh04G020150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G020150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDG6_CUCSA	7.3e-27	62.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G149350 PE=4 SV=1	[more]
A0A067LI90_JATCU	8.3e-23	53.04	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05416 PE=4 SV=1	[more]
W9SSP9_9ROSA	1.8e-22	50.43	Protein neuralized OS=Morus notabilis GN=L484_011768 PE=4 SV=1	[more]
A0A0D2RRV4_GOSRA	7.0e-22	55.45	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G233800 PE=4 SV=1	[more]
A0A0D2TCK1_GOSRA	7.0e-22	55.45	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G233800 PE=4 SV=1	[more]

BLAST of CmoCh04G020150 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04460.1	2.3e-24	51.75	RING/U-box superfamily protein	[more]
AT2G27950.1	4.5e-20	48.25	Ring/U-Box superfamily protein	[more]
AT2G34920.1	4.7e-09	36.63	RING/U-box superfamily protein	[more]

BLAST of CmoCh04G020150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456168\|ref\|XP_004145822.1\|	1.0e-26	62.61	PREDICTED: uncharacterized protein LOC101214410 isoform X2 [Cucumis sativus]	[more]
gi\|778713418\|ref\|XP_011657046.1\|	1.0e-26	62.61	PREDICTED: uncharacterized protein LOC101214410 isoform X1 [Cucumis sativus]	[more]
gi\|659130940\|ref\|XP_008465430.1\|	1.0e-26	62.61	PREDICTED: uncharacterized protein LOC103503044 isoform X2 [Cucumis melo]	[more]
gi\|659130942\|ref\|XP_008465431.1\|	1.0e-26	62.61	PREDICTED: probable GPI-anchored adhesin-like protein PGA55 isoform X3 [Cucumis ...	[more]
gi\|659130938\|ref\|XP_008465429.1\|	1.0e-26	62.61	PREDICTED: uncharacterized protein LOC103503044 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G020150.1	CmoCh04G020150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10044	INHIBITOR OF APOPTOSIS	coord: 1..102 score: 2.8
None	No IPR available	PANTHER	PTHR10044:SF106	RING/U-BOX DOMAIN-CONTAINING PROTEIN	coord: 1..102 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G020150	Cucumber (Chinese Long) v3	cmocucB0895
CmoCh04G020150	Watermelon (97103) v2	cmowmbB699
CmoCh04G020150	Watermelon (97103) v2	cmowmbB712
CmoCh04G020150	Wax gourd	cmowgoB0906
CmoCh04G020150	Wax gourd	cmowgoB0914
CmoCh04G020150	Cucumber (Gy14) v1	cgycmoB0522
CmoCh04G020150	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G020150	Wild cucumber (PI 183967)	cmocpiB741
CmoCh04G020150	Wild cucumber (PI 183967)	cmocpiB754
CmoCh04G020150	Cucumber (Chinese Long) v2	cmocuB745
CmoCh04G020150	Watermelon (Charleston Gray)	cmowcgB623
CmoCh04G020150	Watermelon (Charleston Gray)	cmowcgB629
CmoCh04G020150	Watermelon (97103) v1	cmowmB728
CmoCh04G020150	Watermelon (97103) v1	cmowmB733
CmoCh04G020150	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G020150	Cucurbita pepo (Zucchini)	cmocpeB677
CmoCh04G020150	Cucurbita pepo (Zucchini)	cmocpeB686
CmoCh04G020150	Bottle gourd (USVL1VR-Ls)	cmolsiB623
CmoCh04G020150	Cucumber (Gy14) v2	cgybcmoB665
CmoCh04G020150	Melon (DHL92) v3.6.1	cmomedB723