CmoCh04G020020 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G020020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMitotic spindle assembly checkpoint protein MAD1
LocationCmo_Chr04 : 10623264 .. 10625851 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGTGTCATCTTCAATGCACAAATGCAACTTCTCCATCATCAACGTTTCACCTTCTTCACTTCTTTGCAAATGACTATAATTAGGGCTTCGGCATCCGCTTCCTTTTCTCCTTTGCACATGACTACACATAGGGTTTCCATCTTTGAAACTTCTTCTTTTGGGTCGAAATGTAACACACCTCTTTATCTTATTCATCGCATACTCACATATTTTACAGCCATGATCAGTTCAAAGAAACTTTCCCTACAGCGTCCATTTGTCAATTCCTAGTAAACTCTGCTCTATTATTGAAGCTTGGGGTTTCAGATGCGGGCAATTCCACCTACATTGCTTCAGATAAAAGCTTAGCTGCTCCCTATTGTTATCATTTCAATGAAATTAATATCAAGGAATACTCAAGGTCTTGGAGATTCCTATAAAGGGTCGGCTTGGTTGACAGAAAGTCTAGTGGAAAGGTATACGAAGGGTTAGGGGATGAATCTTCTCATTAATTAATTGACAGGTTTTTGGTTTTGAAATAATGAGATAACTTATTTGATAATTCCAAGAGTGTGGAACAATAATTGAGAAGTCTCTCCTTCAAGATCGTTCTTATTAAGATTTAAGATTTGGAATGCTGAGAACGAAGACAAAAGAAAAAATAAAAAGCCTCCTTTTGGATTTGAAACTGAAATCGAGATTCTTTCTCCTTTTTATATCAAAATCTCTTGGATACTTCAGCCAACTTGATGTTGCTATCACATTTTCTGCCTTCCTTTTTGCAACTATGTTGTTTCTACACAGAGGTAGTCCTCAATTTGCTCAATTAGGCGGTGAAATATTTGTTTTATTTTATAGTGGTTATCTTGTTTTAGATCAAACTTTGTTGTGGGTTGGCCATTCTAGCCTTAAACTCAAAATTAGTAGTATGGCCATTTCTCTTGGAGGCTGAGCTCGTTGGTCTGTTGACCTTGTTTAATTTATATGAGCATTGTAGCTGATTTGTATGCTTGGTTGCAAAGTTGGAGGTCGATTCATGATTTTCATCGGAAGGTTGTAGTAGCTTTTGGTTTTAAGTGTTTGGTGGCGGCCTTTTTCATAGCTTCAGTTTTTGTTTGCTAGCTCTCCAAGTCTTTCGGGTGAAGATATTGAAAAGTTCTTTGTTCTTTCCTGGTTTATTTTCATGGTTAAATCCTTACGTGGATGTATTTACTGTTTTGTATCTTTTTCTTGTTATTTTCATTCCCTTTGTGTGTTTGTATCCCTTGAGCATTTATTCCTTTTTATTATATTAGTGAGAAGTTATTTCTTGTTTTTTAAAAAGTTGGCCGTAATTCTGAATCTTCTCAAACTGATATCAGATTCTGCGTCAGAATCATCATTATGTACATGTTTATCATATTGGTCACTAAAACCGTACATGATGCTCTATTAATCTCTTGCTTTTTGAATTTAGGTAAAGTTGCAAAATGAAGCAAACCTTCGGATGAAAGCTGAGTCTTCAATTGCATTGTCAGAAGAGAAAGCTAAACTCTTAGAAGATAAATTAAACCATTTTTCTGAAAGCATAGAAAGAGAAAGGAAACGTCTTCATGGTGAGCTTGCGCAGTTAAAAGGAGAATCAAAACTTTCTGTTTCAAGGATAAATGCAGATGTAAGTTGACACTTATCGATCACATTCCTCGAAAGAATTCTTGCTGAACATATAAAATTCTCTTATAAAATGTCAAGCAACATTTGTTTGATCATCATGGAAGACTAAACCGTTTAACTTGTCTTGATGATCTTTATTGTAGCTGGAAAAGATGGTTTGCAGAGCTAGTAATGCTGAGAAGGAATCTGAGCTACTAAAAGAGCAGTTGGAAGATTTGAAGAAGCAACTCAATGAGGTCTGTTGCCTTCGTGATTATTTGTGTTAGGTTTTCTGAGAGAATTTTACTAGGATGTCTTTTTCTCTATTGTCTTATTCTACCTTATTGTCTTATTCTCTATGTCTTATTCTACCTTATTGTAATTCAACATCTCTCATTTTATGTCTTTATATTGTGAGTGTCAATTAAACTTGCAATGTGTATACCTTAACTGGTTTCTTTAAGTAGGTGGCTCCTATGGAGTTTGAACCCATAAAACTTCATTGTCCTTTACCCTTTTTTGCTTGCCCTGATGGTTATTAGACCAACTTAGGGGGTTATTATAATGGTTGAAGAAAAAACCTTGATAGAAGGAATATTAATATAATCTCATTAAACGAGAGAAGTAGTTAATCTTATTTATATTATTACCTAGTAATTAAAGATTTATTTAGATTTATCTTATCTTGTTACCTATTATCTTGGGATTTATTTAGATTACCGAGTATCAAGGGAATTTAGATTATCTGTTGATTTAGATTTAGTTAGTCTTTTTCCCTCTAAAAGGGACGTAATTCTCTAAAAAAAAGAAAAGAAAAACAGCCCTCTAATTTAGATTTGCAACATGGTATTAGAGTTTTTCTATCTTGAAAATTTTGATTAGAACCAAAACCCTAACTCAATCGTTGAAGTCTTCGTTCCTGCTGATCATCAATCATGATGAAGTTTCATTTGAAGGCTGCGTCACCGTGA

mRNA sequence

ATGGGTTGTGTCATCTTCAATGCACAAATGCAACTTCTCCATCATCAACGTTTCACCTTCTTCACTTCTTTGCAAATGACTATAATTAGGGCTTCGGCATCCGCTTCCTTTTCTCCTTTGCACATGACTACACATAGGGTAAAGTTGCAAAATGAAGCAAACCTTCGGATGAAAGCTGAGTCTTCAATTGCATTGTCAGAAGAGAAAGCTAAACTCTTAGAAGATAAATTAAACCATTTTTCTGAAAGCATAGAAAGAGAAAGGAAACGTCTTCATGGTGAGCTTGCGCAGTTAAAAGGAGAATCAAAACTTTCTGTTTCAAGGATAAATGCAGATCTGGAAAAGATGGTTTGCAGAGCTAGTAATGCTGAGAAGGAATCTGAGCTACTAAAAGAGCAGTTGGAAGATTTGAAGAAGCAACTCAATGAGGCTGCGTCACCGTGA

Coding sequence (CDS)

ATGGGTTGTGTCATCTTCAATGCACAAATGCAACTTCTCCATCATCAACGTTTCACCTTCTTCACTTCTTTGCAAATGACTATAATTAGGGCTTCGGCATCCGCTTCCTTTTCTCCTTTGCACATGACTACACATAGGGTAAAGTTGCAAAATGAAGCAAACCTTCGGATGAAAGCTGAGTCTTCAATTGCATTGTCAGAAGAGAAAGCTAAACTCTTAGAAGATAAATTAAACCATTTTTCTGAAAGCATAGAAAGAGAAAGGAAACGTCTTCATGGTGAGCTTGCGCAGTTAAAAGGAGAATCAAAACTTTCTGTTTCAAGGATAAATGCAGATCTGGAAAAGATGGTTTGCAGAGCTAGTAATGCTGAGAAGGAATCTGAGCTACTAAAAGAGCAGTTGGAAGATTTGAAGAAGCAACTCAATGAGGCTGCGTCACCGTGA
BLAST of CmoCh04G020020 vs. Swiss-Prot
Match: MAD1_ARATH (Mitotic spindle checkpoint protein MAD1 OS=Arabidopsis thaliana GN=MAD1 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-23
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1

Query: 47  VKLQNEANLRMKAESSIALSEEKAKLLEDKLNHFSESIERERKRLHGELAQLKGESKLSV 106
           VKLQNE NLR KAESS A +EEKAKLLEDKL   S S++RE+KRL+ ++AQL  E+KLSV
Sbjct: 153 VKLQNEMNLRKKAESSAATAEEKAKLLEDKLTQLSGSVDREKKRLNNDIAQLGKEAKLSV 212

Query: 107 SRINADLEKMVCRASNAEKESELLKEQLEDLKKQLNE 144
           +RI ADLE+M CRA NAE ES LL+ QLE LK   +E
Sbjct: 213 ARIGADLERMQCRAQNAETESNLLRSQLEHLKLIFDE 249

BLAST of CmoCh04G020020 vs. TrEMBL
Match: A0A0A0KV95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630750 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.7e-34
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 1

Query: 47  VKLQNEANLRMKAESSIALSEEKAKLLEDKLNHFSESIERERKRLHGELAQLKGESKLSV 106
           V+LQNE+NLR+KAESSIA SEEKA+LLEDKLNH SESIERERK L  ELAQLKGESKLSV
Sbjct: 154 VRLQNESNLRIKAESSIASSEEKARLLEDKLNHLSESIERERKHLDTELAQLKGESKLSV 213

Query: 107 SRINADLEKMVCRASNAEKESELLKEQLEDLKKQLNE 144
           SRINADLEKMVCRASNAEKESELLK QLEDLK QLNE
Sbjct: 214 SRINADLEKMVCRASNAEKESELLKGQLEDLKNQLNE 250

BLAST of CmoCh04G020020 vs. TrEMBL
Match: A5AXP6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010896 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.5e-28
Identity = 76/96 (79.17%), Postives = 83/96 (86.46%), Query Frame = 1

Query: 48  KLQNEANLRMKAESSIALSEEKAKLLEDKLNHFSESIERERKRLHGELAQLKGESKLSVS 107
           KLQNE NLR  AESS AL+EEKA  LE KL+ FSESIERE+KRL  ELAQLK ESKLSVS
Sbjct: 144 KLQNEMNLRKNAESSAALAEEKASALEGKLSQFSESIEREKKRLQNELAQLKRESKLSVS 203

Query: 108 RINADLEKMVCRASNAEKESELLKEQLEDLKKQLNE 144
           RI+ADLE+M CRA+NAEKESELLKEQLE+LK QLNE
Sbjct: 204 RISADLERMECRANNAEKESELLKEQLEELKSQLNE 239

BLAST of CmoCh04G020020 vs. TrEMBL
Match: A0A061G8K7_THECC (Mitotic checkpoint family protein isoform 1 OS=Theobroma cacao GN=TCM_027116 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.2e-28
Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 1

Query: 48  KLQNEANLRMKAESSIALSEEKAKLLEDKLNHFSESIERERKRLHGELAQLKGESKLSVS 107
           KLQNE NLR KAESS A +EEKA +LE KL+  S+SIERE+KRLH ELAQLKGESKLSVS
Sbjct: 152 KLQNEMNLRKKAESSAASAEEKATVLEGKLSQLSQSIEREKKRLHNELAQLKGESKLSVS 211

Query: 108 RINADLEKMVCRASNAEKESELLKEQLEDLKKQLNE 144
           RI+ADLEKM  RA+NAEKES++LKEQLEDLKKQ NE
Sbjct: 212 RISADLEKMEFRANNAEKESDILKEQLEDLKKQFNE 247

BLAST of CmoCh04G020020 vs. TrEMBL
Match: A0A061GFE7_THECC (Mitotic spindle assembly checkpoint protein MAD1 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_027116 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.2e-28
Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 1

Query: 48  KLQNEANLRMKAESSIALSEEKAKLLEDKLNHFSESIERERKRLHGELAQLKGESKLSVS 107
           KLQNE NLR KAESS A +EEKA +LE KL+  S+SIERE+KRLH ELAQLKGESKLSVS
Sbjct: 139 KLQNEMNLRKKAESSAASAEEKATVLEGKLSQLSQSIEREKKRLHNELAQLKGESKLSVS 198

Query: 108 RINADLEKMVCRASNAEKESELLKEQLEDLKKQLNE 144
           RI+ADLEKM  RA+NAEKES++LKEQLEDLKKQ NE
Sbjct: 199 RISADLEKMEFRANNAEKESDILKEQLEDLKKQFNE 234

BLAST of CmoCh04G020020 vs. TrEMBL
Match: A0A061G7C9_THECC (Mitotic spindle assembly checkpoint protein MAD1 isoform 3 OS=Theobroma cacao GN=TCM_027116 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.2e-28
Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 1

Query: 48  KLQNEANLRMKAESSIALSEEKAKLLEDKLNHFSESIERERKRLHGELAQLKGESKLSVS 107
           KLQNE NLR KAESS A +EEKA +LE KL+  S+SIERE+KRLH ELAQLKGESKLSVS
Sbjct: 90  KLQNEMNLRKKAESSAASAEEKATVLEGKLSQLSQSIEREKKRLHNELAQLKGESKLSVS 149

Query: 108 RINADLEKMVCRASNAEKESELLKEQLEDLKKQLNE 144
           RI+ADLEKM  RA+NAEKES++LKEQLEDLKKQ NE
Sbjct: 150 RISADLEKMEFRANNAEKESDILKEQLEDLKKQFNE 185

BLAST of CmoCh04G020020 vs. TAIR10
Match: AT5G49880.1 (AT5G49880.1 mitotic checkpoint family protein)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1

Query: 47  VKLQNEANLRMKAESSIALSEEKAKLLEDKLNHFSESIERERKRLHGELAQLKGESKLSV 106
           VKLQNE NLR KAESS A +EEKAKLLEDKL   S S++RE+KRL+ ++AQL  E+KLSV
Sbjct: 153 VKLQNEMNLRKKAESSAATAEEKAKLLEDKLTQLSGSVDREKKRLNNDIAQLGKEAKLSV 212

Query: 107 SRINADLEKMVCRASNAEKESELLKEQLEDLKKQLNE 144
           +RI ADLE+M CRA NAE ES LL+ QLE LK   +E
Sbjct: 213 ARIGADLERMQCRAQNAETESNLLRSQLEHLKLIFDE 249

BLAST of CmoCh04G020020 vs. NCBI nr
Match: gi|659121307|ref|XP_008460594.1| (PREDICTED: myosin heavy chain, clone 203 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 2.5e-34
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = 1

Query: 47  VKLQNEANLRMKAESSIALSEEKAKLLEDKLNHFSESIERERKRLHGELAQLKGESKLSV 106
           VKLQNE+NLR+KAESSIA SEEKA+LLEDKLNH SESIERERK L  ELAQL+GESKLSV
Sbjct: 154 VKLQNESNLRIKAESSIASSEEKARLLEDKLNHLSESIERERKHLDTELAQLRGESKLSV 213

Query: 107 SRINADLEKMVCRASNAEKESELLKEQLEDLKKQLNE 144
           SRINADL KMVCRASNAEKESELLKEQLEDLKKQLNE
Sbjct: 214 SRINADLAKMVCRASNAEKESELLKEQLEDLKKQLNE 250

BLAST of CmoCh04G020020 vs. NCBI nr
Match: gi|449449214|ref|XP_004142360.1| (PREDICTED: mitotic spindle checkpoint protein MAD1 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-33
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 1

Query: 47  VKLQNEANLRMKAESSIALSEEKAKLLEDKLNHFSESIERERKRLHGELAQLKGESKLSV 106
           V+LQNE+NLR+KAESSIA SEEKA+LLEDKLNH SESIERERK L  ELAQLKGESKLSV
Sbjct: 154 VRLQNESNLRIKAESSIASSEEKARLLEDKLNHLSESIERERKHLDTELAQLKGESKLSV 213

Query: 107 SRINADLEKMVCRASNAEKESELLKEQLEDLKKQLNE 144
           SRINADLEKMVCRASNAEKESELLK QLEDLK QLNE
Sbjct: 214 SRINADLEKMVCRASNAEKESELLKGQLEDLKNQLNE 250

BLAST of CmoCh04G020020 vs. NCBI nr
Match: gi|700197195|gb|KGN52372.1| (hypothetical protein Csa_5G630750 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-33
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 1

Query: 47  VKLQNEANLRMKAESSIALSEEKAKLLEDKLNHFSESIERERKRLHGELAQLKGESKLSV 106
           V+LQNE+NLR+KAESSIA SEEKA+LLEDKLNH SESIERERK L  ELAQLKGESKLSV
Sbjct: 154 VRLQNESNLRIKAESSIASSEEKARLLEDKLNHLSESIERERKHLDTELAQLKGESKLSV 213

Query: 107 SRINADLEKMVCRASNAEKESELLKEQLEDLKKQLNE 144
           SRINADLEKMVCRASNAEKESELLK QLEDLK QLNE
Sbjct: 214 SRINADLEKMVCRASNAEKESELLKGQLEDLKNQLNE 250

BLAST of CmoCh04G020020 vs. NCBI nr
Match: gi|694329222|ref|XP_009355380.1| (PREDICTED: spindle assembly checkpoint component mad1 [Pyrus x bretschneideri])

HSP 1 Score: 134.4 bits (337), Expect = 1.6e-28
Identity = 74/97 (76.29%), Postives = 86/97 (88.66%), Query Frame = 1

Query: 47  VKLQNEANLRMKAESSIALSEEKAKLLEDKLNHFSESIERERKRLHGELAQLKGESKLSV 106
           VKLQNE NLRMKAESS AL+EEKA ++E KL H SESIERE+KRL+ + +QLKGESKLSV
Sbjct: 151 VKLQNEMNLRMKAESSAALAEEKASVVEGKLRHLSESIEREKKRLNNDFSQLKGESKLSV 210

Query: 107 SRINADLEKMVCRASNAEKESELLKEQLEDLKKQLNE 144
           SRI ADLE+M CRA NAEKESELLK+QL+D+KKQL+E
Sbjct: 211 SRITADLERMECRAHNAEKESELLKKQLDDIKKQLSE 247

BLAST of CmoCh04G020020 vs. NCBI nr
Match: gi|645223468|ref|XP_008218644.1| (PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Prunus mume])

HSP 1 Score: 132.1 bits (331), Expect = 7.9e-28
Identity = 74/97 (76.29%), Postives = 85/97 (87.63%), Query Frame = 1

Query: 47  VKLQNEANLRMKAESSIALSEEKAKLLEDKLNHFSESIERERKRLHGELAQLKGESKLSV 106
           VKLQNE NLRMKAESS AL+EEKA  L+ KL+H SES+ERE+KRLH +LA LK ES+LSV
Sbjct: 145 VKLQNEMNLRMKAESSAALAEEKANSLKGKLSHLSESMEREKKRLHNDLAHLKKESELSV 204

Query: 107 SRINADLEKMVCRASNAEKESELLKEQLEDLKKQLNE 144
           SRI ADLE+M CRA NAEKESELL+EQL+DLK+QLNE
Sbjct: 205 SRITADLERMECRAHNAEKESELLQEQLDDLKEQLNE 241

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MAD1_ARATH2.0e-2365.98Mitotic spindle checkpoint protein MAD1 OS=Arabidopsis thaliana GN=MAD1 PE=1 SV=... [more]
Match NameE-valueIdentityDescription
A0A0A0KV95_CUCSA8.7e-3488.66Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630750 PE=4 SV=1[more]
A5AXP6_VITVI5.5e-2879.17Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010896 PE=4 SV=1[more]
A0A061G8K7_THECC7.2e-2878.13Mitotic checkpoint family protein isoform 1 OS=Theobroma cacao GN=TCM_027116 PE=... [more]
A0A061GFE7_THECC7.2e-2878.13Mitotic spindle assembly checkpoint protein MAD1 isoform 2 (Fragment) OS=Theobro... [more]
A0A061G7C9_THECC7.2e-2878.13Mitotic spindle assembly checkpoint protein MAD1 isoform 3 OS=Theobroma cacao GN... [more]
Match NameE-valueIdentityDescription
AT5G49880.11.1e-2465.98 mitotic checkpoint family protein[more]
Match NameE-valueIdentityDescription
gi|659121307|ref|XP_008460594.1|2.5e-3489.69PREDICTED: myosin heavy chain, clone 203 [Cucumis melo][more]
gi|449449214|ref|XP_004142360.1|1.3e-3388.66PREDICTED: mitotic spindle checkpoint protein MAD1 [Cucumis sativus][more]
gi|700197195|gb|KGN52372.1|1.3e-3388.66hypothetical protein Csa_5G630750 [Cucumis sativus][more]
gi|694329222|ref|XP_009355380.1|1.6e-2876.29PREDICTED: spindle assembly checkpoint component mad1 [Pyrus x bretschneideri][more]
gi|645223468|ref|XP_008218644.1|7.9e-2876.29PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Prunus mume... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009630 gravitropism
biological_process GO:0007094 mitotic spindle assembly checkpoint
cellular_component GO:0005635 nuclear envelope
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020020.1CmoCh04G020020.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 56..101
score: -coord: 106..144
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None