CmoCh04G019820 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G019820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transposon Ty1-H Gag-Pol polyprotein
Location	Cmo_Chr04 : 10222837 .. 10233255 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCGGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGGTACAGACCTTTAAAGCACGACTAGTAGCAAAGGGTTATACCCAAAGAGAGGGGGTGGACTATGAAGAAACCTTCTCTCCTGTTGCTATGCTTAAATCAATAAGAATACTCTTGTCTATTGCCACATTTTATGATTATGAAATTTGGCAAATGGATGTTAAGACAGCTTTTCTAAACGGCAATCTTGAAGAGAGTATCTATATGGCTCAACCAGAGGGGTTCATTGAACAGGATCACGAGCAAAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACTGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTGGTGTTGTACGTTGACGATATCCTACTCATTGGAAATGATGTGGGAATTCTGACTGACATTAAGCATTGGCTGGCGACACAATTCCAAATGAAAGATTTGGGAGAGGCTCAGTTTGTTCTTGGAATCCAAATTATTCGGAATCGCAAGAACAAAACACTAGCATTGTCTCAAGCATCGTACATCGACAAAATGTTGATTCGATATAAGATGCAGGACTCCAAGAAAGGATTATTACCTTTCAGGCATGGAGTTCATTTGTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAAACACATTCCCTATGCATCAGCGGTCGGTAGTCTGATGTATGCCATGCTTTGTACCCGACCCGACATATGCTATGCTGTGGGAATTGTCAGCAGATATCAGTCCAATCCGGGACGTGCTCATTGGACTGCCGTTAAGAATATCCTCAAGTATCTTAGGACAACGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACAGGGTACACTGACTCAGATTTTCAGACCGATGTAGATTCGAGGAAATCGACATCAGGATCTGTCTTCACTCTGAACGAAGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAAGTAACTTCAGGGGTAAAACGGTAAATTGACCCAGCTCTAGTTACGAACAACCTGTGAAGAATCAACTTACTAATCATGGTTATATCAGATGGACAGAAATATATCTATAGTGAGGGGAGTGCAACTACTAGGCTATAGTGGAGTGTCCTAGTAGTTAACGAATGTTGGTTAACCAGGTTAATGAGTTTAATCGGTTAATCTTGGATCGTTGGAGCCCATGATCTATAGGTCCATTAGGTCCCTCTGCTAGCTCATATCGGACTAAACCATAGAACAATGTGACGAGTGAGTTTGAAGTGTTCGAATTCAAATTAGGGAATATGCGTTACATATATACGATATATTTAACCGCAATTTTGTTTTATTTACGAATTAAACGAAAAGAGAGAATGTGAGATATTTAAATAAGATTTAAATATCTTAATCAATTATGTGTCGGAATTGATTGGGATTGGCATTTGAATTAATATTAAATATTAATTAAATAGTTTAATTAATCATTTAATGTTACTTTAATTTGAAATTCATTATTCAAATTAATTGTTGAATTAAAATGAAGAAAGTCAAAATGTTGACTTTCATCTAATGGAAAAATCCATGTTAGTGGAATTTTGAGGTGTCAAAATTTGGTTTAACCAAACTTGCATGTTTGCCAAATAAACCCCACAAGTTTGAGTGGAATTTTGAGTGTCAAAATTTGGTTAACTCAAACATGCATGCTTGCCACATAATCCCAAACTCGGAATTTTAAGTGTCAAAATTTGGTGATCTCAAGTTTGCATGAACATGCAAACTTGACTCTTTAAATAGAGTGATCATGATACTTGGAGGCATTTTTTTTTTCTTCATCTTGATGAAAAACCTTGAGAAAAACTTCTCACAAACACTCTCTTTCACATATACAAAATCCCTCCCAAGTTTAGTCACTCACCGTATTCCACAATCCCTTTCTAAGGCCGGAGGATAGTGGAGAAGACACTAGTGGTGGTTCGAAACCGATTCGTGAGGCAAAAGGAGTTTGAACTACAAAAGGTTAGTATTTAAACTCATTAAGTTTTAATACTTATGAACATGCTAGTAATTTACAATAATTGATGTTCTAAAAGTGCCTAAGATCCAAATTGCTTCCGCATGTGTTATATTAACACCAACAGCAATGTCATCCTATTCCCTGTTGATCCAAATCCACTCTAAAATCCAAACCTTTTCTTGAGTTGCATATCTCTTCTCGGACTCTAAGGCATTAGAACCTTTTTTTTTTCTTTTGCCCGACTGCATTAGTAGTAATTCAAGTTCTAACGGTTATCGTTTACCACTTCTTCCAAGAATATTAGGGTTTGACATCTATGACCATATAACACCTCAATGGTGCCATCTATATGGTCGCTACGTAACTATTATTATAAGCAAACTCTACCAAGTGTAAATGGGTATCCTAACTACCAATAAAGTCTAACAAATATGTCACTACCCGATTCTTTAGGCTTCGAATCTTGGACCATAACGAAGAAGAAAAAGATGAAAGAAAATAACATATAATAAAGTACGGTAAAATTTTATGCAATTTAAAATCAGCAACACCACAATTAAAAACAAAACGAATCCAATTACAAGCCAGTGTTGTTCGAGTTTATTACAAATGAAAAATAGGTTTGGATACAACTTCAAAACGAAATACAAAAGATACAAAATGCACAGATGACTCACCACTCAAAACAACCCTCTCTATGACCGCATAGCTCCTGAACACTCCCTAACCTCAGCCGACAATCAGCAACACTTGGAAAAGAGATGAGGAATGAGGTGAGTATAAACATACTCGGTAAGCAACTTAGTTGTAGACTCATCATATCCATATCGTAGTAAGTTCACATAGACTTTTCTCTAGACACTAAGAGTTCGGATTTAGTTCTACAACTATTTGAACTTTTAAGAATGCCTCAAAATTTCGAGTGGTTCTCATATCCATTACAAGTCCACTCTAAATACGAAGGAGGTTCATCCATTTCTAGCACCATGGCTCTAATTATAATACCTCAAGCCTAAAGAAATGTTTAAGGGCACATAAGGAAGTTTATAGGATCCAAATTTGGCGTGCAGGACAAAAATGTCATTTTTTTTAATTTTTAAGGAACTTTCCACCCTTTTAATTCCTTATAGAAAAGAAATTTTAAGGTACTTAAGGAAATAAAAAGTTCAGAAAATGAAAAATTACTAAAATACCTATGATGTTCAAGTTAATTACAAAAATACCATTAGATCATAAAATTAGATACGCTACCGTAGTTGCTTACACAAAATCGATGAGATCTTTTCGTCCAACCATTGGATCTTCACGGCTAAAATTTAAAATATAGGTCGACAAGCCTTTAATTGAAGAAGATATTTTCAGTAGAATATCTAAAACATTCAACCTCAAATTCATGACGATTTTGGAGGTTTCAATGTTGGTTTAAACTTCCTCTATAAAGTATGAAGCAGGAGCTTTCATTTGAAACAAGAATCAAGCATCGACAAGCTCACAAACTTGAGTTATAAGCGTTTCACTTTTAGGTATTTCTTTTAAATTTGAGAGTTATAGTCTACTATTTCCCTTTAAACTTGTTTCAACACCTCCTGACTAAGATTACCCACAAGATTGGTAAAGAAAGACAATGTTGAAAGTCTCCCTAACCTATACGCTTAATTCAATTCAATATAGAACTCAAGAAAATCTTGGAGAGCCAATCCAAGACAACTGTGAGATCCCACATTGGTTGGAGAGGGAAATGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGTGTTTTGAAAACTTTGAGAGGAAACCTGAAAGGGAAAGCCCAAAGAGAACATCTACTAGTGGTGGGCTTGGAGTGTTACAAATGGTATCAGAGCAAGACACCAGGTTGTGTGCTAACGAGAATGCCAGGCTCCCAAGGGAGTAGATTGTAAGATCCTCACATCAATTGGAGGGAGGAAGACACCAGGCGATGTGCTAACGAGGCTCCCAAGGGAGTAGATGGTAAGATCTCATATCAATTGGAAAGAGGAATGAAACATTCTTTTTACGGGTGTAAAAACTGCTCCCTAACAGAGCCTATTAAAACCATGAGGGATAGTACCAAAGGAAAAACCCAAAAAAAGCCCAAAGAGGATAATATTGCGGTGGACTTGGGCTGTTACAGCGGTAATAAATTTGTAGTGTGATGCCGATTCCATTTGGCTTCTACACTCTCTAAGAACACTTTTGCAGAAGGTGAAATTTCAAAATATTCAAGAAAACTCGAGGAATTTGTGACTCCAAACCCGTGCCAAACACTTCCTTGGATGATGAGTATTTTTCATAAATACCACGAACATTGTTGCAATCCAAACCTATGTCAAGCACTTCCTAAGATCGAGGGTAGTTGAAGAAATCGTAATCGGGTCCATTTTAAACAAGATTGAGGATAATCTAAACATATCATCTTACTAGATAAAACAAATATCATTAGCTTCGTAGAGATGAGAGGAGAAGAATTCATGATGGTATCGAGTCTTGAGGAGGTCCCTATCGTGTGACCAATAAAAGCTAATTTTGCAAAAATAAAAAAGATAGAAAGAAAAAAGTAAGGGAGCCGAGAGTTTGGATTTCGAAATTGGAGACACCCATGTAAATTCATTCATCCAAAATGAATTCTTAAGCTTGAGAGAAAGATAAGGAAGAGATCTCGTGAAGGAATCAAGACTTGAAAGTGTCTTTTGTCCCAACCAATAAGACTTTTTCTAGGCTTATCTCCGACGAGAAACATACTTTCGAGCAAAGTTTCGAGAGCCATAATTTAAGTTATAGTTCATCATGATATGAAATTAGTACCTAGCTCTTCTTTGCAATGTCATCTTCAAGTTTCATAAAACAAACAAGGCCATTCTTAAGAAATTGTTGATAGTTCAAAAAACTAGACTTAAAGATAGATCACTACAAAAATTCATAGTAATTCATATTCCAAAAAACTCGAGAGCGATGGTCCCAAACGTCAACATTGAAGTAGCCCTCTTCAATTTTTTTTTTTTAAGAAATACTTGTAAGAATCACTTGGGTTTCAATATTAACCTTAAGTTAAGGATCTAAACGTATTTTGCTAAAAAATCAAAAAACGTTAAAATAACCCTTTAAACGAACTCTGCTATCCATGAAAAATTACATTTTTGCCCTTTTTTTCTTTTAGTTTCTTTTGAGCATTAGAGTCTCATTAAAAAACTAACCATTATACAAGTAAAAATGTTAAAAGATGGGTTAATCTCAGGTGTTAGAGCCAACAAGTCCTCCATCTCAAGTTTGGTGAGATTCTTTCCTTCTTGAAATTCTTTGCTTCTATGTCTCTTTTATGGAGAAGAACACTGAGATATTTTATTAAACTTATCTTTGCTTAAACTACAATATAAATAATTTATAACTATAACATTAAAAACACGTTCTTTTTCCATATCATTGTCATCATATTCCTATTCTAACTTACATCACTATCATCAACCATTTACTCCGAAATATAATAACTTTTTAACTACATTTAACCATAAATAATAGTCAACAAATTGAAAACAAATTTTTATTTATAACCTATGACACAACTTGTAGTGGCCGTCAAATTTGACCTACTCTACTCTCTAAATACTTCTTAAAAATTTAAATAAAATTTTTTCGACTATTTATATGAATTAAAGTCTAACCGCTACACAGTTCTTTTTACAGGTTCAAAAGTAAATCTGATCCATTTCACAGGTCGTGTGTTTGAACATAAAATTTATAGTTCGGAGAAAATAAGGATTAAAAAGTAGAAAAGTTGTTTGGAAAATTATGGGAAAAATATGAATTAAAAATAGAATCTAAATTTAAAAAGAGAAATAAGGGTGGATATTGAAAGGAATAGTATATATAATATTTTTTTTTAAAAAGAAAATTAATTAATATAATAATAATTAATTATTATATATTTCTTTATTTAATAATAACCAAAAACATTGGCAGTGACTCAGCCATTTAGAATTTGTTGTTCAACTTGCTCTCATTTAAGTGATTTTGAAATTATTATTTTGACTTTTATGGACACATAAAAATACTAATAATATTATTATCATCAAAATATTAGTTAATTAATTAATTAAAATAATTTAAGGTTGAACATCGATATTCTGTTAAACATATTTTAAAGTTTTATTTTAAATGTCTGAAAATAAAATGTTTGAGAATCAAATTAATGTGTTTGATTACTAGAAATGTTATCAAAATTTCTTTCAATTATTTTATTATGTTATTTAATTTTAAATAACTAAAGTAGATAATTATTTTATTTTTATTAAACTAATTTTAACTAATTAAAATTTAATTTATTTTCGACCGGTAAATTTTAGTTTACATTGAATAATTTATATTTATATTGATTTTAGTAAAATTATATAAACTTTTACTTATACTACATATTTAAAAAATGAAGAATAAATTATATTTAATTAGATATACTTATAAATCGTATACTATTGTAATAATTTATTAATAAAACAATAATATGCCTCTTAACTCTTAATTAAATTTTTATGCATTAATAAGTATATTATAAATAACATAATTAAATCTTACCTTTTTTTTATAGTTTGTTTAGCATCAATATTAATAATTATTCTCGAGTAAATTATTTTAATAAAATTATACCAAAAAAATTAATTTTAAATAATTAGTAGAGTCATCTAATTGAATAAAAAAATAAAAAAATACCATAAAACTCATGTCCGTTCCCTTCGAGGCATCATAATAGTCCTCATCTATTCTCATTTAATAGGTTGAAAATGATGACTTCGTTTATTGTCAACGAGAATTAATTTTTGGAGTATATAGGGTGTCGTTTAATGGTGCCACCAGTATTGAGGAGTTAGGCCTAGGGCGATTAGGGTAGTGCGCCAAGGCAACTAGTCGCCTAACTTTGAGGAAGAGTCGTTGTAGTAAATCTGCCAAGAGATGGGGGACATGGAGTCAAATAGGGTAATTCAGTAGCTGGCAAGCAGAGGGGGTTACTCTTTCAATCTTAGGTAACTATATGGTCCTATGGGAATGGTTCACCAACTAATCTCGCATGGATGACGAGCAAGGTAGCACACACCATTTTGTCACGAGAGAGTTTTCGGAGGTAGCACCTAGACCCATGACACTGGTTTTACACCACTTAAGTAAAGCAAGCTATCTACGTCTAAGTACAGAAAAGGGTGAACCACCCCCCTCATTCCTAAAGTGGGTCAGTGAATAACTAAAGCACCGCTCAGAACTTCGAGGCAATCTAGATGCTCAGTTAGCAGTAGAGACTAGGTCTGAACTTCCTAGAGCTTAGAGTAAAATTCGTGGATATCTACTAGGTTAAGGGTTCAATGAGAGCCTACAAGTAGGTTTCATACTAAGTATTTTATAATTACCCATTTTTCCTTTCTTTTTCAGGTGATTTCAGGCTGCCAATCAAGGTGGAGGAGCGTTTGATAGCTGTGATAGTCACAGAAAGGGTCATTCTGGAGCGTCAATTCGTTTTTATATTTTGAGTCATTATGCAAGGGAGCCCACCGAGAAGCTAAGTGCCCACAAAAGGCGACACACTATGCCTTCTAAGTAAAATTTGGAATGATCTAAAAAAATATCGTTCACTCCGCGTGGGGAGTTAAAGCACTTGTTCACTTTCCATAAGAGAGTGGAAGAGATAGTGGAAAATGGTATTGTGTATGTCGAGACCTAAGTTAACCATATAGTGCCCAGGAACACCATTGTCGACTTTGGAGCCACCCACAATTTCATGATGGTGACTAAAGCAAAACGCTTGAACATCCCTTGCTATTGAGACAGAGGAATGATGAAAGTCGTCAATTCAGCAGCTTTACCACTTATAAGTTCTAAAAAGAACTCTAGTTAAGATGGGAACTTGAAATGAACGAACTAGCTTTGTAATAGTCAAGATGGATGACTTCAACATCGTGTCAGGATGGATTTCCTGCTAGAACATAAAGTTATTCTCAAGCCCCTAGCAAAATGCTTAGTAGTAACGGGGTCTAACCCGACATTCATTCAGACAATTACCCGTCAACCAAAAGGGGTGAAAATGATGATGACACTATAGTTGAGAAGGGATCTTAGCCATGATGAACCTATGCTCGTTGTCGGTGTCATAGTTTATAGGAGAGCTTGAGTGAGCTAACTCCAATAGAAACCTCGTGATCGCTGCACAAACACTGTGATGCAAGACAAGAAAGTCAGACAAAATATTTATCTCCACCTGGGCAAATAGATCACGAGATTGATTTTATGTCACTGGAGAGATCACTTGTCATAGATGGATTTTTTTTTTTTTTGTTTTATTTCCTATATTTTTTTTATAAAAATAATAACAAACAAATAAAAAGGATAAAAAAAAAAAAAGTAGTTTTTTAAAAACTTAGTGGCTAGTCCGTACATGCCGACTTCTTCGTTCTTAAGAAACTTGTTGTACAGTGTGAAAGAAGAGCTCTGTTGCGTTCCTTAACGAGGCTGCAAAGTGAGGCCTCGGAAAATGACGTCTTCTTTCAATTTGAAGATGTTAAAGCATCGGAAAAGATCATCAATGAAGTTCTGTGTACGGAAAAGGCGGAAAAAGAAGGCGTAAGTGGACCCATATGGTACTATGGAGGTCATTTTTTAATCTCTCAATGGCTTTTCCAAGTCAATTTTTAGTCTACTTTGTTTTCTTCATCAATGCGTTTGCTCTTATTTCGTCCTCACTTGTTCCCATTGTTTCTGATTCTATTAGAAGAATTCGAAGTGAGCGTTAAGAGGGTGTGA

mRNA sequence

ATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCGGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGGTACAGACCTTTAAAGCACGACTAGTAGCAAAGGGTTATACCCAAAGAGAGGGGGTGGACTATGAAGAAACCTTCTCTCCTGTTGCTATGCTTAAATCAATAAGAATACTCTTGTCTATTGCCACATTTTATGATTATGAAATTTGGCAAATGGATGTTAAGACAGCTTTTCTAAACGGCAATCTTGAAGAGAGTATCTATATGGCTCAACCAGAGGGGTTCATTGAACAGGATCACGAGCAAAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACTGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTGGTGTTGTACGTTGACGATATCCTACTCATTGGAAATGATGTGGGAATTCTGACTGACATTAAGCATTGGCTGGCGACACAATTCCAAATGAAAGATTTGGGAGAGGCTCAGTTTGTTCTTGGAATCCAAATTATTCGGAATCGCAAGAACAAAACACTAGCATTGTCTCAAGCATCGTACATCGACAAAATGTTGATTCGATATAAGATGCAGGACTCCAAGAAAGGATTATTACCTTTCAGGCATGGAGTTCATTTGTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAAACACATTCCCTATGCATCAGCGGTCGGTAGTCTGATGTATGCCATGCTTTGTACCCGACCCGACATATGCTATGCTGTGGGAATTGTCAGCAGATATCAGTCCAATCCGGGACGTGCTCATTGGACTGCCGTTAAGAATATCCTCAAGTATCTTAGGACAACGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACAGGGTACACTGACTCAGATTTTCAGACCGATTGTGAAAGAAGAGCTCTGTTGCGTTCCTTAACGAGGCTGCAAAGTGAGGCCTCGGAAAATGACGTCTTCTTTCAATTTGAAGATGTTAAAGCATCGGAAAAGATCATCAATGAAGTTCTGTGTACGGAAAAGGCGGAAAAAGAAGGCGTAAGTGGACCCATATGGTACTATGGAGAAGAATTCGAAGTGAGCGTTAAGAGGGTGTGA

Coding sequence (CDS)

ATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAGATCAACCGGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGGTACAGACCTTTAAAGCACGACTAGTAGCAAAGGGTTATACCCAAAGAGAGGGGGTGGACTATGAAGAAACCTTCTCTCCTGTTGCTATGCTTAAATCAATAAGAATACTCTTGTCTATTGCCACATTTTATGATTATGAAATTTGGCAAATGGATGTTAAGACAGCTTTTCTAAACGGCAATCTTGAAGAGAGTATCTATATGGCTCAACCAGAGGGGTTCATTGAACAGGATCACGAGCAAAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTGGAATATAAAGTTTGATACTGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTGGTGTTGTACGTTGACGATATCCTACTCATTGGAAATGATGTGGGAATTCTGACTGACATTAAGCATTGGCTGGCGACACAATTCCAAATGAAAGATTTGGGAGAGGCTCAGTTTGTTCTTGGAATCCAAATTATTCGGAATCGCAAGAACAAAACACTAGCATTGTCTCAAGCATCGTACATCGACAAAATGTTGATTCGATATAAGATGCAGGACTCCAAGAAAGGATTATTACCTTTCAGGCATGGAGTTCATTTGTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAAACACATTCCCTATGCATCAGCGGTCGGTAGTCTGATGTATGCCATGCTTTGTACCCGACCCGACATATGCTATGCTGTGGGAATTGTCAGCAGATATCAGTCCAATCCGGGACGTGCTCATTGGACTGCCGTTAAGAATATCCTCAAGTATCTTAGGACAACGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACAGGGTACACTGACTCAGATTTTCAGACCGATTGTGAAAGAAGAGCTCTGTTGCGTTCCTTAACGAGGCTGCAAAGTGAGGCCTCGGAAAATGACGTCTTCTTTCAATTTGAAGATGTTAAAGCATCGGAAAAGATCATCAATGAAGTTCTGTGTACGGAAAAGGCGGAAAAAGAAGGCGTAAGTGGACCCATATGGTACTATGGAGAAGAATTCGAAGTGAGCGTTAAGAGGGTGTGA

Homology

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BLAST of CmoCh04G019820 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 5.0e-99
Identity = 178/361 (49.31%), Postives = 248/361 (68.70%), Query Frame = 1


Query: 1    MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
            M  EMES+  N  ++LV+ P G +P+ CKW++K K+D   K+  +KARLV KG+ Q++G+
Sbjct: 830  MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61   DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
            D++E FSPV  + SIR +LS+A   D E+ Q+DVKTAFL+G+LEE IYM QPEGF     
Sbjct: 890  DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 121  EQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVY-KRIVNSTVAFLVLYV 180
            +  VCKL +S+YGLKQA R W +KFD+ +KS  + +   +PCVY KR   +    L+LYV
Sbjct: 950  KHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYV 1009

Query: 181  DDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYIDKM 240
            DD+L++G D G++  +K  L+  F MKDLG AQ +LG++I+R R ++ L LSQ  YI+++
Sbjct: 1010 DDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERV 1069

Query: 241  LIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDI 300
            L R+ M+++K    P    + LSK+  P T +E  +M  +PY+SAVGSLMYAM+CTRPDI
Sbjct: 1070 LERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDI 1129

Query: 301  CYAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYGAKDLILTGYTDSDFQTDCER 360
             +AVG+VSR+  NPG+ HW AVK IL+YLR T    L +G  D IL GYTD+D   D + 
Sbjct: 1130 AHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDN 1189

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BLAST of CmoCh04G019820 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 238.4 bits (607), Expect = 1.4e-61
Identity = 129/359 (35.93%), Postives = 209/359 (58.22%), Query Frame = 1


Query: 1    MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
            +N E+ +   N+ W +  +P+    +  +W++  K ++ G    +KARLVA+G+TQ+  +
Sbjct: 910  INTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQI 969

Query: 61   DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
            DYEETF+PVA + S R +LS+   Y+ ++ QMDVKTAFLNG L+E IYM  P+G     +
Sbjct: 970  DYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCN 1029

Query: 121  EQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVY---KRIVNSTVAFLVL 180
               VCKL ++IYGLKQA+R W   F+ A+K   F  +  + C+Y   K  +N  + +++L
Sbjct: 1030 SDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI-YVLL 1089

Query: 181  YVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYID 240
            YVDD+++   D+  + + K +L  +F+M DL E +  +GI+I    +   + LSQ++Y+ 
Sbjct: 1090 YVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVK 1149

Query: 241  KMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRP 300
            K+L ++ M++      P    ++     S       ++  + P  S +G LMY MLCTRP
Sbjct: 1150 KILSKFNMENCNAVSTPLPSKINYELLNS-------DEDCNTPCRSLIGCLMYIMLCTRP 1209

Query: 301  DICYAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYG---AKDLILTGYTDSDF 354
            D+  AV I+SRY S      W  +K +L+YL+ T D  L++    A +  + GY DSD+
Sbjct: 1210 DLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDW 1256

[Close]

BLAST of CmoCh04G019820 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 139.8 bits (351), Expect = 6.8e-32
Identity = 88/261 (33.72%), Postives = 129/261 (49.43%), Query Frame = 1


Query: 92  MDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKS 151
           MDV TAFLN  ++E IY+ QP GF+ + +   V +L   +YGLKQA   WN   +  +K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 152 YGFKQNVDEPCVYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEA 211
            GF ++  E  +Y R  +    ++ +YVDD+L+      I   +K  L   + MKDLG+ 
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 212 QFVLGIQIIRNRKNKTLALSQASYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQ 271
              LG+  I    N  + LS   YI K     ++   K    P  +   L +  SP    
Sbjct: 121 DKFLGLN-IHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSP---- 180

Query: 272 EVEDMKHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRTT 331
            ++D+   PY S VG L++     RPDI Y V ++SR+   P   H  + + +L+YL TT
Sbjct: 181 HLKDI--TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTT 240

Query: 332 RDYMLMY-GAKDLILTGYTDS 352
           R   L Y     L LT Y D+
Sbjct: 241 RSMCLKYRSGSQLALTVYCDA 254

[Close]

BLAST of CmoCh04G019820 vs. Swiss-Prot
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.3e-18
Identity = 82/330 (24.85%), Postives = 152/330 (46.06%), Query Frame = 1


Query: 45   FKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLE 104
            +KAR+V +G TQ     Y    +       I+I L IA   +  +  +D+  AFL   LE
Sbjct: 1336 YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLE 1395

Query: 105  ESIYMAQPEGFIEQDHEQR-VCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCV 164
            E IY+  P       H++R V KL +++YGLKQ+ + WN      +   G K N   P +
Sbjct: 1396 EEIYIPHP-------HDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGL 1455

Query: 165  YKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEA------QFVLGI 224
            Y+         + +YVDD ++  ++   L +  + L + F++K  G          +LG+
Sbjct: 1456 YQ--TEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGM 1515

Query: 225  QIIRNRKNKTLALSQASYIDKMLIRY--KMQDSKKGLLPFRHGVHLSKEQSPKTPQEVED 284
             ++ N++  T+ L+  S+I++M  +Y  +++  +K  +P      +  ++      E E 
Sbjct: 1516 DLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEF 1575

Query: 285  MKHI-PYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDY 344
             + +      +G L Y     R DI +AV  V+R  + P    +  +  I++YL   +D 
Sbjct: 1576 RQGVLKLQQLLGELNYVRHKCRYDINFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDI 1635

Query: 345  MLMYGA---KDLILTGYTDSDFQTDCERRA 362
             + Y     KD  +   TD+   ++ + ++
Sbjct: 1636 GIHYDRDCNKDKKVIAITDASVGSEYDAQS 1655

[Close]

BLAST of CmoCh04G019820 vs. Swiss-Prot
Match: YJ41B_YEAST (Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-J PE=3 SV=3)

HSP 1 Score: 94.0 bits (232), Expect = 4.3e-18
Identity = 82/330 (24.85%), Postives = 152/330 (46.06%), Query Frame = 1


Query: 45   FKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLE 104
            +KAR+V +G TQ     Y    +       I+I L IA   +  +  +D+  AFL   LE
Sbjct: 1337 YKARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLE 1396

Query: 105  ESIYMAQPEGFIEQDHEQR-VCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCV 164
            E IY+  P       H++R V KL +++YGLKQ+ + WN      +   G K N   P +
Sbjct: 1397 EEIYIPHP-------HDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGL 1456

Query: 165  YKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEA------QFVLGI 224
            Y+         + +YVDD ++  ++   L +  + L + F++K  G          +LG+
Sbjct: 1457 YQ--TEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGM 1516

Query: 225  QIIRNRKNKTLALSQASYIDKMLIRY--KMQDSKKGLLPFRHGVHLSKEQSPKTPQEVED 284
             ++ N++  T+ L+  S+I++M  +Y  +++  +K  +P      +  ++      E E 
Sbjct: 1517 DLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEF 1576

Query: 285  MKHI-PYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDY 344
             + +      +G L Y     R DI +AV  V+R  + P    +  +  I++YL   +D 
Sbjct: 1577 RQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDI 1636

Query: 345  MLMYGA---KDLILTGYTDSDFQTDCERRA 362
             + Y     KD  +   TD+   ++ + ++
Sbjct: 1637 GIHYDRDCNKDKKVIAITDASVGSEYDAQS 1656

[Close]

BLAST of CmoCh04G019820 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 654.1 bits (1686), Expect = 1.2e-184
Identity = 315/360 (87.50%), Postives = 340/360 (94.44%), Query Frame = 1


Query: 1    MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
            MNLEMESMYFNSVW LVD P  VKPIGCKWIYKRKRDQ GKVQTFKARLVAKGYTQ+EGV
Sbjct: 824  MNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGV 883

Query: 61   DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
            DYEETFSPVAMLKSIRILLSIATFY+YEIWQMDVKTAFLNGNLEESIYM QPEGFI QD 
Sbjct: 884  DYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQ 943

Query: 121  EQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYVD 180
            EQ+VCKL++SIYGLKQASRSWNI+FDTAIKSYGF+QNVDEPCVYK+IVNS VAFL+LYVD
Sbjct: 944  EQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVD 1003

Query: 181  DILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYIDKML 240
            DILLIGNDV  LTD+K WL TQFQMKDLGEAQ++LGIQI+RNRKNKTLA+SQASYIDK+L
Sbjct: 1004 DILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVL 1063

Query: 241  IRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDIC 300
             RYKMQ+SKKG LPFRHG+HLSKEQ PKTPQEVEDM++IPY+SAVGSLMYAMLCTRPDIC
Sbjct: 1064 SRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDIC 1123

Query: 301  YAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYGAKDLILTGYTDSDFQTDCERR 360
            Y+VGIVSRYQSNPGR HWTAVKNILKYLR TR+YML+YGAKDLILTGYTDSDFQ+D + R
Sbjct: 1124 YSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDAR 1183

[Close]

BLAST of CmoCh04G019820 vs. TrEMBL
Match: A5AUE7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021035 PE=4 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 9.6e-158
Identity = 268/360 (74.44%), Postives = 315/360 (87.50%), Query Frame = 1


Query: 1   MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
           M LE+ESMY NSVW+LVD P+G+KPIGCKWIYK KR   GKV+TFKARLVAKG+TQ+EGV
Sbjct: 164 MKLEIESMYSNSVWKLVDLPEGIKPIGCKWIYKXKRGPNGKVETFKARLVAKGFTQKEGV 223

Query: 61  DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
           DYE+TFSPV MLKSIRILLSI  +YDYEIWQMDVKT FLNG+LEE+IYM QPEGF+ +D 
Sbjct: 224 DYEDTFSPVXMLKSIRILLSIXAYYDYEIWQMDVKTXFLNGHLEETIYMVQPEGFVVKDQ 283

Query: 121 EQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYVD 180
           EQ+VCKL+RSIYGLKQASRSWNI F+ AIKSYGF+QN+ EPCVYK+I    V FLVLYVD
Sbjct: 284 EQKVCKLQRSIYGLKQASRSWNIIFNEAIKSYGFEQNLGEPCVYKQIGGDKVVFLVLYVD 343

Query: 181 DILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYIDKML 240
           DILLIGNDV  L+ +K+WLA+QFQMKDLGEA ++LGIQ+ R+RKN+ LALSQA+YIDK+L
Sbjct: 344 DILLIGNDVESLSKVKNWLASQFQMKDLGEASYILGIQMTRDRKNRLLALSQAAYIDKVL 403

Query: 241 IRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDIC 300
           +++ M++SKKG LP RHGVHLSKEQ PKTPQ+ E M+ +PYASAVGSLMYAMLCTRPDIC
Sbjct: 404 VKFAMENSKKGNLPSRHGVHLSKEQCPKTPQDEEKMRRVPYASAVGSLMYAMLCTRPDIC 463

Query: 301 YAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYGAKDLILTGYTDSDFQTDCERR 360
           +AVG+VSRYQSNPG  HW AVK+ILKYLR TR+YML+Y  ++LI  GYTDSDFQ+D + R
Sbjct: 464 FAVGVVSRYQSNPGLDHWVAVKHILKYLRRTRNYMLVYSGRELIPIGYTDSDFQSDRDSR 523

[Close]

BLAST of CmoCh04G019820 vs. TrEMBL
Match: A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 1.6e-157
Identity = 270/357 (75.63%), Postives = 306/357 (85.71%), Query Frame = 1


Query: 1    MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
            MN EMESMY N VW LVD P  VKPIGCKWIYK+KRDQ   V  FKARLVAKG+T+   +
Sbjct: 840  MNSEMESMYDNKVWTLVDLPSDVKPIGCKWIYKKKRDQDSNVTVFKARLVAKGFTRSLSL 899

Query: 61   DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
             YEETFSPVAMLKSIRI+L+IA F+DYEIWQMDVKTAFLNGNLEESIYM QPEGF+ QD 
Sbjct: 900  SYEETFSPVAMLKSIRIILAIAAFFDYEIWQMDVKTAFLNGNLEESIYMIQPEGFVAQDQ 959

Query: 121  EQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYVD 180
            EQ+ CKL+ SIYGLKQASRSWNI+FD  IK++GF QNVDE CVYK+I  S VAFL+LYVD
Sbjct: 960  EQKACKLQGSIYGLKQASRSWNIRFDEVIKAFGFIQNVDESCVYKKISGSVVAFLILYVD 1019

Query: 181  DILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYIDKML 240
            DILLIGNDV  L D+K WL T F MKDLGEAQ++LGI+I R+R NKT+ +SQ++YIDK+L
Sbjct: 1020 DILLIGNDVEYLEDVKKWLNTSFSMKDLGEAQYILGIRIYRDRSNKTIGMSQSTYIDKVL 1079

Query: 241  IRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDIC 300
             R+KMQDSKKGLLPFRHG+HLSKEQ PKTPQEVEDM++IPY+SA+GSLMYAMLCTRPD+C
Sbjct: 1080 SRFKMQDSKKGLLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAIGSLMYAMLCTRPDVC 1139

Query: 301  YAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYGA-KDLILTGYTDSDFQTD 357
            YA+ IVSRYQSNPGR HWTAVKNILKYLR TR+  L+YG  KDL + GYTDS FQTD
Sbjct: 1140 YALSIVSRYQSNPGRDHWTAVKNILKYLRRTRNMFLVYGGDKDLAVKGYTDSSFQTD 1196

[Close]

BLAST of CmoCh04G019820 vs. TrEMBL
Match: A5C065_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044406 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 2.4e-145
Identity = 251/360 (69.72%), Postives = 295/360 (81.94%), Query Frame = 1


Query: 1   MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
           M  EMESMY N VWELV+ P GVKPIGCKWIYK+KR   GK +T+KA LVAKGYTQ+EG+
Sbjct: 129 MKSEMESMYSNQVWELVEPPKGVKPIGCKWIYKKKRGIDGKXZTYKAXLVAKGYTQKEGI 188

Query: 61  DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
           DYEETFSPVAMLKSIRILLSIA ++DYEIWQMDVKTAFLNG+L+E IYM Q EGFI    
Sbjct: 189 DYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGSLDECIYMKQXEGFIXNGQ 248

Query: 121 EQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYVD 180
           E  +CKL RSIYGLKQASRSWN  FD  IK++GF Q  DE CVYK+     V FLVLYVD
Sbjct: 249 EHLLCKLNRSIYGLKQASRSWNTCFDQTIKTFGFDQCHDESCVYKKWNGKKVVFLVLYVD 308

Query: 181 DILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYIDKML 240
           DILLIGN +G+LT +K WL+ +F MKDLGEA  +LGI+++RNRK K + LSQA YID +L
Sbjct: 309 DILLIGNCIGMLTSVKDWLSQRFDMKDLGEAAHILGIKLMRNRKKKMIGLSQALYIDTIL 368

Query: 241 IRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDIC 300
            R+ MQ SKKG LPFRHG+ LSK+QSPKTP+E+E MK +PYASAVGSLMYAMLCTRPDIC
Sbjct: 369 NRFNMQGSKKGFLPFRHGIXLSKDQSPKTPEEIESMKAVPYASAVGSLMYAMLCTRPDIC 428

Query: 301 YAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYGAKDLILTGYTDSDFQTDCERR 360
           +AVG+VSR+QSN GR HW AVK+I+KYL+ TRDYML++ +++L   GYTDSDFQ+D + R
Sbjct: 429 FAVGMVSRFQSNXGREHWXAVKHIIKYLKRTRDYMLVFQSENLXPIGYTDSDFQSDQDSR 488

[Close]

BLAST of CmoCh04G019820 vs. TrEMBL
Match: O23864_9ORYZ (Polyprotein OS=Oryza australiensis PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 1.1e-132
Identity = 223/357 (62.46%), Postives = 281/357 (78.71%), Query Frame = 1


Query: 1    MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
            M  E+ESMY N VW LVD PDGVK I CKW++K+K D  G V  +KARLVAKG+ Q +GV
Sbjct: 814  MKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDGNVHIYKARLVAKGFKQIQGV 873

Query: 61   DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
            DY+ETFSPVAMLKSIRI+L+IA ++DYEIWQMDVKTAFLNGNL E +YM QP+GF++ + 
Sbjct: 874  DYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPES 933

Query: 121  EQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYVD 180
              ++CKL++SIYGLKQASRSWNI+FD  IK +GF +N +E CVYK++  S + FL+LYVD
Sbjct: 934  PGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAIVFLILYVD 993

Query: 181  DILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYIDKML 240
            DILLIGND+ +L  +K  L   F MKDLGEA ++LGI+I R+R  + + LSQ++YIDK+L
Sbjct: 994  DILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVL 1053

Query: 241  IRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDIC 300
             R+ M DSKKG LP  HG++LSK Q P+T  E   M  +PYASA+GS+MYAMLCTRPD+ 
Sbjct: 1054 KRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPDVS 1113

Query: 301  YAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYGA-KDLILTGYTDSDFQTD 357
            YA+   SRYQS+PG  HWTAVKNILKYLR T+D  L+YG  +DL+++GYTD+ FQTD
Sbjct: 1114 YALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTD 1170

[Close]

BLAST of CmoCh04G019820 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 232.6 bits (592), Expect = 4.4e-61
Identity = 129/360 (35.83%), Postives = 206/360 (57.22%), Query Frame = 1


Query: 1   MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
           M+ E+ +M     WE+   P   KPIGCKW+YK K +  G ++ +KARLVAKGYTQ+EG+
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
           D+ ETFSPV  L S++++L+I+  Y++ + Q+D+  AFLNG+L+E IYM  P G+  +  
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221

Query: 121 E----QRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLV 180
           +      VC LK+SIYGLKQASR W +KF   +  +GF Q+  +   + +I  +    ++
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVL 281

Query: 181 LYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYI 240
           +YVDDI++  N+   + ++K  L + F+++DLG  ++ LG++I R+     + + Q  Y 
Sbjct: 282 VYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAG--INICQRKYA 341

Query: 241 DKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTR 300
             +L    +   K   +P    V  S         +  D K   Y   +G LMY  + TR
Sbjct: 342 LDLLDETGLLGCKPSSVPMDPSVTFSAHSG----GDFVDAK--AYRRLIGRLMYLQI-TR 401

Query: 301 PDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYGAK-DLILTGYTDSDFQT 356
            DI +AV  +S++   P  AH  AV  IL Y++ T    L Y ++ ++ L  ++D+ FQ+
Sbjct: 402 LDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQS 452

[Close]

BLAST of CmoCh04G019820 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-15
Identity = 62/181 (34.25%), Postives = 94/181 (51.93%), Query Frame = 1


Query: 174 FLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQA 233
           +L+LYVDDILL G+   +L  +   L++ F MKDLG   + LGIQI  +     L LSQ 
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQT 61

Query: 234 SYIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAML 293
            Y +++L    M D K    P    ++ S   + K P   +      + S VG+L Y  L
Sbjct: 62  KYAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSD------FRSIVGALQYLTL 121

Query: 294 CTRPDICYAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDY-MLMYGAKDLILTGYTDSD 353
            TRPDI YAV IV +    P  A +  +K +L+Y++ T  + + ++    L +  + DSD
Sbjct: 122 -TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSD 172

[Close]

BLAST of CmoCh04G019820 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-13
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 1   MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
           M  E++++  N  W LV  P     +GCKW++K K    G +   KARLVAKG+ Q EG+
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DYEETFSPVAMLKSIRILLSIA 83
            + ET+SPV    +IR +L++A
Sbjct: 104 YFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of CmoCh04G019820 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 654.1 bits (1686), Expect = 1.7e-184
Identity = 315/360 (87.50%), Postives = 340/360 (94.44%), Query Frame = 1


Query: 1    MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
            MNLEMESMYFNSVW LVD P  VKPIGCKWIYKRKRDQ GKVQTFKARLVAKGYTQ+EGV
Sbjct: 824  MNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGV 883

Query: 61   DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
            DYEETFSPVAMLKSIRILLSIATFY+YEIWQMDVKTAFLNGNLEESIYM QPEGFI QD 
Sbjct: 884  DYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQ 943

Query: 121  EQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYVD 180
            EQ+VCKL++SIYGLKQASRSWNI+FDTAIKSYGF+QNVDEPCVYK+IVNS VAFL+LYVD
Sbjct: 944  EQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVD 1003

Query: 181  DILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYIDKML 240
            DILLIGNDV  LTD+K WL TQFQMKDLGEAQ++LGIQI+RNRKNKTLA+SQASYIDK+L
Sbjct: 1004 DILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVL 1063

Query: 241  IRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDIC 300
             RYKMQ+SKKG LPFRHG+HLSKEQ PKTPQEVEDM++IPY+SAVGSLMYAMLCTRPDIC
Sbjct: 1064 SRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDIC 1123

Query: 301  YAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYGAKDLILTGYTDSDFQTDCERR 360
            Y+VGIVSRYQSNPGR HWTAVKNILKYLR TR+YML+YGAKDLILTGYTDSDFQ+D + R
Sbjct: 1124 YSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDAR 1183

[Close]

BLAST of CmoCh04G019820 vs. NCBI nr
Match: gi|147768021|emb|CAN69397.1| (hypothetical protein VITISV_021035 [Vitis vinifera])

HSP 1 Score: 564.7 bits (1454), Expect = 1.4e-157
Identity = 268/360 (74.44%), Postives = 315/360 (87.50%), Query Frame = 1


Query: 1   MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
           M LE+ESMY NSVW+LVD P+G+KPIGCKWIYK KR   GKV+TFKARLVAKG+TQ+EGV
Sbjct: 164 MKLEIESMYSNSVWKLVDLPEGIKPIGCKWIYKXKRGPNGKVETFKARLVAKGFTQKEGV 223

Query: 61  DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
           DYE+TFSPV MLKSIRILLSI  +YDYEIWQMDVKT FLNG+LEE+IYM QPEGF+ +D 
Sbjct: 224 DYEDTFSPVXMLKSIRILLSIXAYYDYEIWQMDVKTXFLNGHLEETIYMVQPEGFVVKDQ 283

Query: 121 EQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYVD 180
           EQ+VCKL+RSIYGLKQASRSWNI F+ AIKSYGF+QN+ EPCVYK+I    V FLVLYVD
Sbjct: 284 EQKVCKLQRSIYGLKQASRSWNIIFNEAIKSYGFEQNLGEPCVYKQIGGDKVVFLVLYVD 343

Query: 181 DILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYIDKML 240
           DILLIGNDV  L+ +K+WLA+QFQMKDLGEA ++LGIQ+ R+RKN+ LALSQA+YIDK+L
Sbjct: 344 DILLIGNDVESLSKVKNWLASQFQMKDLGEASYILGIQMTRDRKNRLLALSQAAYIDKVL 403

Query: 241 IRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDIC 300
           +++ M++SKKG LP RHGVHLSKEQ PKTPQ+ E M+ +PYASAVGSLMYAMLCTRPDIC
Sbjct: 404 VKFAMENSKKGNLPSRHGVHLSKEQCPKTPQDEEKMRRVPYASAVGSLMYAMLCTRPDIC 463

Query: 301 YAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYGAKDLILTGYTDSDFQTDCERR 360
           +AVG+VSRYQSNPG  HW AVK+ILKYLR TR+YML+Y  ++LI  GYTDSDFQ+D + R
Sbjct: 464 FAVGVVSRYQSNPGLDHWVAVKHILKYLRRTRNYMLVYSGRELIPIGYTDSDFQSDRDSR 523

[Close]

BLAST of CmoCh04G019820 vs. NCBI nr
Match: gi|1019597807|gb|AMY96445.1| (gag/pol protein [Momordica dioica])

HSP 1 Score: 563.9 bits (1452), Expect = 2.3e-157
Identity = 270/357 (75.63%), Postives = 306/357 (85.71%), Query Frame = 1


Query: 1    MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
            MN EMESMY N VW LVD P  VKPIGCKWIYK+KRDQ   V  FKARLVAKG+T+   +
Sbjct: 840  MNSEMESMYDNKVWTLVDLPSDVKPIGCKWIYKKKRDQDSNVTVFKARLVAKGFTRSLSL 899

Query: 61   DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
             YEETFSPVAMLKSIRI+L+IA F+DYEIWQMDVKTAFLNGNLEESIYM QPEGF+ QD 
Sbjct: 900  SYEETFSPVAMLKSIRIILAIAAFFDYEIWQMDVKTAFLNGNLEESIYMIQPEGFVAQDQ 959

Query: 121  EQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYVD 180
            EQ+ CKL+ SIYGLKQASRSWNI+FD  IK++GF QNVDE CVYK+I  S VAFL+LYVD
Sbjct: 960  EQKACKLQGSIYGLKQASRSWNIRFDEVIKAFGFIQNVDESCVYKKISGSVVAFLILYVD 1019

Query: 181  DILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYIDKML 240
            DILLIGNDV  L D+K WL T F MKDLGEAQ++LGI+I R+R NKT+ +SQ++YIDK+L
Sbjct: 1020 DILLIGNDVEYLEDVKKWLNTSFSMKDLGEAQYILGIRIYRDRSNKTIGMSQSTYIDKVL 1079

Query: 241  IRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDIC 300
             R+KMQDSKKGLLPFRHG+HLSKEQ PKTPQEVEDM++IPY+SA+GSLMYAMLCTRPD+C
Sbjct: 1080 SRFKMQDSKKGLLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAIGSLMYAMLCTRPDVC 1139

Query: 301  YAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYGA-KDLILTGYTDSDFQTD 357
            YA+ IVSRYQSNPGR HWTAVKNILKYLR TR+  L+YG  KDL + GYTDS FQTD
Sbjct: 1140 YALSIVSRYQSNPGRDHWTAVKNILKYLRRTRNMFLVYGGDKDLAVKGYTDSSFQTD 1196

[Close]

BLAST of CmoCh04G019820 vs. NCBI nr
Match: gi|147822228|emb|CAN64055.1| (hypothetical protein VITISV_044406 [Vitis vinifera])

HSP 1 Score: 523.5 bits (1347), Expect = 3.5e-145
Identity = 251/360 (69.72%), Postives = 295/360 (81.94%), Query Frame = 1


Query: 1   MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
           M  EMESMY N VWELV+ P GVKPIGCKWIYK+KR   GK +T+KA LVAKGYTQ+EG+
Sbjct: 129 MKSEMESMYSNQVWELVEPPKGVKPIGCKWIYKKKRGIDGKXZTYKAXLVAKGYTQKEGI 188

Query: 61  DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
           DYEETFSPVAMLKSIRILLSIA ++DYEIWQMDVKTAFLNG+L+E IYM Q EGFI    
Sbjct: 189 DYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGSLDECIYMKQXEGFIXNGQ 248

Query: 121 EQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYVD 180
           E  +CKL RSIYGLKQASRSWN  FD  IK++GF Q  DE CVYK+     V FLVLYVD
Sbjct: 249 EHLLCKLNRSIYGLKQASRSWNTCFDQTIKTFGFDQCHDESCVYKKWNGKKVVFLVLYVD 308

Query: 181 DILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYIDKML 240
           DILLIGN +G+LT +K WL+ +F MKDLGEA  +LGI+++RNRK K + LSQA YID +L
Sbjct: 309 DILLIGNCIGMLTSVKDWLSQRFDMKDLGEAAHILGIKLMRNRKKKMIGLSQALYIDTIL 368

Query: 241 IRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDIC 300
            R+ MQ SKKG LPFRHG+ LSK+QSPKTP+E+E MK +PYASAVGSLMYAMLCTRPDIC
Sbjct: 369 NRFNMQGSKKGFLPFRHGIXLSKDQSPKTPEEIESMKAVPYASAVGSLMYAMLCTRPDIC 428

Query: 301 YAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYGAKDLILTGYTDSDFQTDCERR 360
           +AVG+VSR+QSN GR HW AVK+I+KYL+ TRDYML++ +++L   GYTDSDFQ+D + R
Sbjct: 429 FAVGMVSRFQSNXGREHWXAVKHIIKYLKRTRDYMLVFQSENLXPIGYTDSDFQSDQDSR 488

[Close]

BLAST of CmoCh04G019820 vs. NCBI nr
Match: gi|2443320|dbj|BAA22288.1| (polyprotein [Oryza australiensis])

HSP 1 Score: 481.5 bits (1238), Expect = 1.5e-132
Identity = 223/357 (62.46%), Postives = 281/357 (78.71%), Query Frame = 1


Query: 1    MNLEMESMYFNSVWELVDQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKGYTQREGV 60
            M  E+ESMY N VW LVD PDGVK I CKW++K+K D  G V  +KARLVAKG+ Q +GV
Sbjct: 814  MKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDGNVHIYKARLVAKGFKQIQGV 873

Query: 61   DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDH 120
            DY+ETFSPVAMLKSIRI+L+IA ++DYEIWQMDVKTAFLNGNL E +YM QP+GF++ + 
Sbjct: 874  DYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPES 933

Query: 121  EQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYVD 180
              ++CKL++SIYGLKQASRSWNI+FD  IK +GF +N +E CVYK++  S + FL+LYVD
Sbjct: 934  PGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAIVFLILYVD 993

Query: 181  DILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIIRNRKNKTLALSQASYIDKML 240
            DILLIGND+ +L  +K  L   F MKDLGEA ++LGI+I R+R  + + LSQ++YIDK+L
Sbjct: 994  DILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVL 1053

Query: 241  IRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDIC 300
             R+ M DSKKG LP  HG++LSK Q P+T  E   M  +PYASA+GS+MYAMLCTRPD+ 
Sbjct: 1054 KRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPDVS 1113

Query: 301  YAVGIVSRYQSNPGRAHWTAVKNILKYLRTTRDYMLMYGA-KDLILTGYTDSDFQTD 357
            YA+   SRYQS+PG  HWTAVKNILKYLR T+D  L+YG  +DL+++GYTD+ FQTD
Sbjct: 1114 YALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTD 1170

The following BLAST results are available for this feature:

BLAST of CmoCh04G019820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	5.0e-99	49.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	1.4e-61	35.93	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
YCH4_YEAST	6.8e-32	33.72	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]
YH41B_YEAST	3.3e-18	24.85	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YJ41B_YEAST	4.3e-18	24.85	Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CmoCh04G019820 vs. TrEMBL


Match Name	E-value	Identity	Description
E2GK51_BRYDI	1.2e-184	87.50	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
A5AUE7_VITVI	9.6e-158	74.44	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021035 PE=4 SV=1	[more]
A0A165U314_9ROSI	1.6e-157	75.63	Gag/pol protein OS=Momordica dioica PE=4 SV=1	[more]
A5C065_VITVI	2.4e-145	69.72	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044406 PE=4 SV=1	[more]
O23864_9ORYZ	1.1e-132	62.46	Polyprotein OS=Oryza australiensis PE=4 SV=1	[more]

BLAST of CmoCh04G019820 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	4.4e-61	35.83	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.6e-15	34.25	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	1.2e-13	41.46	ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

BLAST of CmoCh04G019820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|299474487\|gb\|ADJ18449.1\|	1.7e-184	87.50	gag/pol protein [Bryonia dioica]	[more]
gi\|147768021\|emb\|CAN69397.1\|	1.4e-157	74.44	hypothetical protein VITISV_021035 [Vitis vinifera]	[more]
gi\|1019597807\|gb\|AMY96445.1\|	2.3e-157	75.63	gag/pol protein [Momordica dioica]	[more]
gi\|147822228\|emb\|CAN64055.1\|	3.5e-145	69.72	hypothetical protein VITISV_044406 [Vitis vinifera]	[more]
gi\|2443320\|dbj\|BAA22288.1\|	1.5e-132	62.46	polyprotein [Oryza australiensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G019820.1	CmoCh04G019820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 11..254 score: 8.8
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..356 score: 5.9E
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 11..235 score: 6.23E-15coord: 265..346 score: 6.23

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G019820	Cp4.1LG01g16700	Cucurbita pepo (Zucchini)	cmocpeB673

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G019820	Silver-seed gourd	carcmoB0478
CmoCh04G019820	Cucumber (Chinese Long) v3	cmocucB0884
CmoCh04G019820	Watermelon (97103) v2	cmowmbB710
CmoCh04G019820	Wax gourd	cmowgoB0906
CmoCh04G019820	Wax gourd	cmowgoB0914
CmoCh04G019820	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G019820	Wild cucumber (PI 183967)	cmocpiB740
CmoCh04G019820	Cucumber (Chinese Long) v2	cmocuB732
CmoCh04G019820	Watermelon (Charleston Gray)	cmowcgB634
CmoCh04G019820	Watermelon (97103) v1	cmowmB727
CmoCh04G019820	Bottle gourd (USVL1VR-Ls)	cmolsiB621
CmoCh04G019820	Bottle gourd (USVL1VR-Ls)	cmolsiB623
CmoCh04G019820	Cucumber (Gy14) v2	cgybcmoB661