CmoCh04G019810 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G019810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransposon Ty1-BL Gag-Pol polyprotein
LocationCmo_Chr04 : 10220333 .. 10222786 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAATTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATATGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAAACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAAAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGTAAATATGATTTACTCGTTGTAGAAATGTGTTTAGTAGAGTATGACAACTCAACTTGGATACTAGATTCAGGGGCGACTAATCATATTTGTTCTTTTTACCAGGAAACTAGCTCCTGGAGAATGCTTGCGGACGGCGAGATAACACTCAGGGTTGGAACAGGAGAGGTTGTCTCAGCAAGATCAGTGGGAAATTTAAAGTTGTTTTTTGGAGATAGATTCATTATATTAGATAATGTACTTTTTGTTCCAGGAATGAAAAGAAATCTAATATCCATCTCTTGTTTATTAGAACAGTTGTATAAAGTATCTTTTGAAATTAATGAAGTGTTCATTTGCAAAAGAGGTATTCATATTTGTTCTGCAAAACTAGAAAACAACTTATATATGTTAAAACCGAGCAAAACAAAAGCTATTTTAAATACTGAGATGTTTAAAACAGCTGAAACTCAAAATAAACGACAAAAGATTTCTCCTAATATCTTTCTTTGGCATTTAAGACTAGGCCACATTAATCTCAATAGGATTGAGAGATTGGTTAAAAGGGGACTTCTAAATAAGTTAGAAGACAATTCTTTACCTCCATGTGAGTCTTGTCTTGAGGGTAAAATGACTAAACGATCATTTTGCGAAAAAGGTTATAGAGCCAAAGAAACCTTAGAACTCGTGCATACAGATCTCTGTGGTCCAATGAATGTCAAAGCACGAGGAGTGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGGCTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTCAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGAGGAGAGTACATGGATTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGGTATGCCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACTCTATTAGACATGGTTCGGTCTATGATGAGTTTCGCTCAATTACCCGATCCATTTTGGGGATATGCAGTGGAGACTGCTACATACATTTTGAACATGGTTCCTACTAAGAGTGTTTTAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGGTAGTTTACGTCACTTCAGAATTTGGGGATGTCCAGCACATGTGTTGTTGCAAAATCCCAAGAAATTAGAACGTCGTTCAAAATTATGTCTATTCGTAGGATACCCCAAAGAGACGAAAGGTGGTTTGTTTTATGATCCTCAAGAAAATAGAGTGTTTGTATCAACGAACGCTACATTCTTAGAGGAAGACCACGTAAGAAATCATCAACCTCGTAGCAAACTAGTATTAAGTGAGATTTCTAAAGAAGCTACTGATAAAACAACAAGAGTTGTTGATCAAGCTAGTCCTTCAACCAGAGTTGTTGATGGAGCTGACACTTCTGGTCAATCACATCCTTCTCAAGAGTTGAGAATGCCTCGACGTAGTGGGAGGGTTATAACTCAACCCGATCGTTACTTGGGTTTGGCAGAAACTCAAGTCATCATACCTGATGATGGCGTTGAGGATCCATGA

mRNA sequence

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAATTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATATGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAAACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAAAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGTTATAGAGCCAAAGAAACCTTAGAACTCGTGCATACAGATCTCTGTGGTCCAATGAATGTCAAAGCACGAGGAGTGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGGCTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTCAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGAGGAGAGTACATGGATTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGGTATGCCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACTCTATTAGACATGGTTCGGTCTATGATGAGTTTCGCTCAATTACCCGATCCATTTTGGGGATATGCAGTGGAGACTGCTACATACATTTTGAACATGGTTCCTACTAAGAGTGTTTTAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGGATACCCCAAAGAGACGAAAGGTGGTTTGTTTTATGATCCTCAAGAAAATAGAGTGTTTGTATCAACGAACGCTACATTCTTAGAGGAAGACCACGTAAGAAATCATCAACCTCGTAGCAAACTAGTATTAAGTGAGATTTCTAAAGAAGCTACTGATAAAACAACAAGAGTTGTTGATCAAGCTAGTCCTTCAACCAGAGTTGTTGATGGAGCTGACACTTCTGGTCAATCACATCCTTCTCAAGAGTTGAGAATGCCTCGACGTAGTGGGAGGGTTATAACTCAACCCGATCGTTACTTGGGTTTGGCAGAAACTCAAGTCATCATACCTGATGATGGCGTTGAGGATCCATGA

Coding sequence (CDS)

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAATTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATATGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAAACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAAAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGTTATAGAGCCAAAGAAACCTTAGAACTCGTGCATACAGATCTCTGTGGTCCAATGAATGTCAAAGCACGAGGAGTGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGGCTATCTTTACCTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTCAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGAGGAGAGTACATGGATTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGGTATGCCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACTCTATTAGACATGGTTCGGTCTATGATGAGTTTCGCTCAATTACCCGATCCATTTTGGGGATATGCAGTGGAGACTGCTACATACATTTTGAACATGGTTCCTACTAAGAGTGTTTTAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGGATACCCCAAAGAGACGAAAGGTGGTTTGTTTTATGATCCTCAAGAAAATAGAGTGTTTGTATCAACGAACGCTACATTCTTAGAGGAAGACCACGTAAGAAATCATCAACCTCGTAGCAAACTAGTATTAAGTGAGATTTCTAAAGAAGCTACTGATAAAACAACAAGAGTTGTTGATCAAGCTAGTCCTTCAACCAGAGTTGTTGATGGAGCTGACACTTCTGGTCAATCACATCCTTCTCAAGAGTTGAGAATGCCTCGACGTAGTGGGAGGGTTATAACTCAACCCGATCGTTACTTGGGTTTGGCAGAAACTCAAGTCATCATACCTGATGATGGCGTTGAGGATCCATGA
Homology
[Close]
BLAST of CmoCh04G019810 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.6e-36
Identity = 70/167 (41.92%), Postives = 110/167 (65.87%), Query Frame = 1 

Query: 289 RAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTE 348
           R    L+LV++D+CGPM +++ G  +YF++FIDD SR  ++Y++  K +  + F+++   
Sbjct: 476 RKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHAL 535

Query: 349 VQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDM 408
           V+   G+ +K LRSD GGEY    F++Y   HGIR + + PG PQ NGV+ER NRT+++ 
Sbjct: 536 VERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEK 595

Query: 409 VRSMMSFAQLPDPFWGYAVETATYILNMVPTKSV-LETPYELWKGRK 455
           VRSM+  A+LP  FWG AV+TA Y++N  P+  +  E P  +W  ++
Sbjct: 596 VRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKE 642

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BLAST of CmoCh04G019810 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 6.2e-28
Identity = 61/174 (35.06%), Postives = 101/174 (58.05%), Query Frame = 1 

Query: 291 KETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQ 350
           K  L +VH+D+CGP+         YF+ F+D ++ Y   YL+ +KS+    F+++  + +
Sbjct: 478 KRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSE 537

Query: 351 NLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVR 410
                 +  L  D G EY+    + + ++ GI   L+ P  PQ NGVSER  RT+ +  R
Sbjct: 538 AHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKAR 597

Query: 411 SMMSFAQLPDPFWGYAVETATYILNMVPTKSVLE---TPYELWKGRKGYPKETK 462
           +M+S A+L   FWG AV TATY++N +P++++++   TPYE+W  +K Y K  +
Sbjct: 598 TMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLR 651

[Close]
BLAST of CmoCh04G019810 vs. Swiss-Prot
Match: YD23B_YEAST (Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR3 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-15
Identity = 52/172 (30.23%), Postives = 86/172 (50.00%), Query Frame = 1 

Query: 272 CPKYLAEKKAEKTQ-QGYRAK-----ETLELVHTDLCGPMNVKARGVYEYFISFIDDYSR 331
           CP  L  K  +    +G R K     E  + +HTD+ GP++   +    YFISF D+ +R
Sbjct: 633 CPDCLIGKSTKHRHIKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTR 692

Query: 332 YGYLYLMHHKSEA--LEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIR 391
           + ++Y +H + E   L  F      ++N     +  ++ DRG EY +     +    GI 
Sbjct: 693 FQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGIT 752

Query: 392 SQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILN 436
           +  +     + +GV+ER NRTLL+  R+++  + LP+  W  AVE +T I N
Sbjct: 753 ACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRN 804

[Close]
BLAST of CmoCh04G019810 vs. Swiss-Prot
Match: YB11B_YEAST (Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-BL PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-15
Identity = 50/172 (29.07%), Postives = 89/172 (51.74%), Query Frame = 1 

Query: 272 CPKYLAEKKAEKTQ-QGYRAK-----ETLELVHTDLCGPMNVKARGVYEYFISFIDDYSR 331
           CP  L  K  +    +G R K     E  + +HTD+ GP++   +    YFISF D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696

Query: 332 YGYLYLMHHKSE--ALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIR 391
           + ++Y +H + E   L+ F      ++N    ++  ++ DRG EY +     ++ ++GI 
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756

Query: 392 SQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILN 436
              +     + +GV+ER NRTLLD  R+ +  + LP+  W  A+E +T + N
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRN 808

[Close]
BLAST of CmoCh04G019810 vs. Swiss-Prot
Match: YB12B_YEAST (Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-BR PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-15
Identity = 50/172 (29.07%), Postives = 89/172 (51.74%), Query Frame = 1 

Query: 272 CPKYLAEKKAEKTQ-QGYRAK-----ETLELVHTDLCGPMNVKARGVYEYFISFIDDYSR 331
           CP  L  K  +    +G R K     E  + +HTD+ GP++   +    YFISF D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696

Query: 332 YGYLYLMHHKSE--ALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIR 391
           + ++Y +H + E   L+ F      ++N    ++  ++ DRG EY +     ++ ++GI 
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756

Query: 392 SQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILN 436
              +     + +GV+ER NRTLLD  R+ +  + LP+  W  A+E +T + N
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRN 808

[Close]
BLAST of CmoCh04G019810 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 2.6e-110
Identity = 232/407 (57.00%), Postives = 278/407 (68.30%), Query Frame = 1 

Query: 205 ANVAISKKLLRGSSSQNKSGPSTSKSVLMKKK------GKGKNKIPTNRKNKVQKADKGK 264
           ANV ++ ++ R   +QNK    +S + L   +       + +  + +   N+++      
Sbjct: 417 ANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPP 476

Query: 265 CFHCNENGHWKRNCPKYLAEKKAEKTQQGYRAKETLELVHTDLCGPMNVKARGVYEYFIS 324
           C  C E    KR+            T +G RAK  LELVH+DLCGPMNVKARG YEYFIS
Sbjct: 477 CESCLEGKMTKRSF-----------TGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFIS 536

Query: 325 FIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMI 384
           FIDD+SRYG++YL+HHKSE+ EKF+EYK EV+N +GKTIKTLRSDRGGEYMD +FQDY+I
Sbjct: 537 FIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLI 596

Query: 385 EHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVP 444
           E GI+SQLSAP  PQQNGVSERRNRTLLDMVRSMMS+AQLPD FWGYA+ETA +ILN VP
Sbjct: 597 EFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETAIHILNNVP 656

Query: 445 T--------------KSVL--------------ETPYELWKGRK-----GYPKETKGGLF 504
           +              KS L              + P +L    K     GYPKE++GGLF
Sbjct: 657 SKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFVGYPKESRGGLF 716

Query: 505 YDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDG 564
           Y PQEN+VFVSTNATFLEEDH RNHQPRSK+VL E+ K ATDK        S ST+VVD 
Sbjct: 717 YHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDK-------PSSSTKVVDK 776

Query: 565 ADTSGQSHPSQELRMPRRSGRVITQPDRYLGLAETQVIIPDDGVEDP 573
           A+ S QSH SQELR+PRRSGRV+ QP+RYLGL ETQ+IIPDDGVEDP
Sbjct: 777 ANISDQSHTSQELRVPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDP 805

[Close]
BLAST of CmoCh04G019810 vs. TrEMBL
Match: A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.9e-78
Identity = 175/340 (51.47%), Postives = 215/340 (63.24%), Query Frame = 1 

Query: 272 CPKYLAEKKAEK--TQQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYL 331
           C   L  K  ++  T +G RA + LEL+HTD+CGPM+VKARG Y+YF+SF DD SRYGY+
Sbjct: 484 CESCLEGKMTKRPFTGKGLRASDLLELIHTDVCGPMSVKARGGYQYFLSFTDDLSRYGYV 543

Query: 332 YLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAP 391
           YL+ HKSE+ EKF+E++ EV+N +GK IKTLRSDRGGEYM   F D++ E GI SQLSAP
Sbjct: 544 YLLKHKSESFEKFKEFQAEVENEIGKKIKTLRSDRGGEYMSSEFGDHLREFGIVSQLSAP 603

Query: 392 GMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYEL 451
           G PQ NGVSERRNRTLLDMVRSMMS+A LPD FWGYA E    ILN VP+KSV ETPYEL
Sbjct: 604 GTPQCNGVSERRNRTLLDMVRSMMSYADLPDSFWGYARERERAILNRVPSKSVEETPYEL 663

Query: 452 WKGRK------------GYPKETKGGLFYDPQENRVFVST-------------------- 511
           W GRK             + K+ +        E  +FV                      
Sbjct: 664 WYGRKSSLSFLKIWGCPAHVKKLQPKKLEPRSEKCLFVGYPKETRGYYFYHPQENKVFVA 723

Query: 512 -NATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTR-VVDGADTS-GQSH- 571
            N  FLE++ +  HQP SK+VL  + +          D+ S ST+ VVD A+ +  QSH 
Sbjct: 724 TNEAFLEKEFLSRHQPGSKIVLKAVVEPLIPLDG--TDKPSSSTKVVVDKAEVNDDQSHT 783

Query: 572 -PSQELRMPRRSGRVITQPDRYLGLAETQVIIPDDGVEDP 573
              QELR+PRRSGR    P+RYLGL ETQ++I D+G EDP
Sbjct: 784 PDQQELRVPRRSGRSRRAPNRYLGLVETQIMILDNGEEDP 821

[Close]
BLAST of CmoCh04G019810 vs. TrEMBL
Match: W9RZ97_9ROSA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis GN=L484_018680 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 8.0e-75
Identity = 155/290 (53.45%), Postives = 197/290 (67.93%), Query Frame = 1 

Query: 284 TQQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFR 343
           T +G RA E L+L+H+D+CG +NV+ RG YEY+ +FIDDYSRYGY+YLM  KSE   KFR
Sbjct: 7   TAKGVRATEPLQLIHSDVCGLLNVQVRGAYEYYATFIDDYSRYGYVYLMQRKSETFGKFR 66

Query: 344 EYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNR 403
           E++ EV+  LGK IKT RSDR GEYMD  F+D++IE G+ SQL+APG PQQNGV+ERRNR
Sbjct: 67  EFRAEVEKQLGKPIKTPRSDREGEYMDQEFRDFLIEEGVVSQLTAPGTPQQNGVAERRNR 126

Query: 404 TLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRKGYPKETKGG 463
           TLLDM+RSM+S++ LP  FWG+A++TA     +      LE   E++    GYP+ T+GG
Sbjct: 127 TLLDMIRSMLSYSSLPTSFWGHALKTAIPAHVLRQKTGKLEPRSEVYI-FVGYPQGTRGG 186

Query: 464 LFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSE-ISKEATDKTTRVVDQASPSTRV 523
           LFY   + +VFVSTNATFLE D++ + +PRSK+VL E +S E   + TRVV      T V
Sbjct: 187 LFYSQADQKVFVSTNATFLEHDYMIDFKPRSKIVLEELLSDEIRPQPTRVVGPLRQKTIV 246

Query: 524 VDGADTSGQSHPSQELRMPRRSGRVITQPDRYLGLAETQVIIPDDGVEDP 573
                      P Q L  PRRS RV   PDRY G  E Q++  DDG EDP
Sbjct: 247 -----------PDQTLMAPRRSRRVSRLPDRYTG--EAQIVTADDGKEDP 282

[Close]
BLAST of CmoCh04G019810 vs. TrEMBL
Match: A5BQ76_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019364 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.2e-71
Identity = 139/266 (52.26%), Postives = 186/266 (69.92%), Query Frame = 1 

Query: 286  QGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREY 345
            +G RA + LEL+H+DLCGPM+V+ARG +EYF++F DDYSRYGY+YL+  KSE  EKF+ +
Sbjct: 812  KGNRANDVLELIHSDLCGPMSVQARGGFEYFVTFTDDYSRYGYIYLLCRKSECFEKFKAF 871

Query: 346  KTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTL 405
            K E++   GK IKTLRSD GGEY+   F  ++ E GI SQLSAPGMPQQNGV+ERRNRTL
Sbjct: 872  KAEMEQRHGKYIKTLRSDHGGEYISREFITFLSEQGITSQLSAPGMPQQNGVAERRNRTL 931

Query: 406  LDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRKGYPKETKGGLF 465
            ++MVRSMMS++ LP   WG+A+ETA YILN+VP+KSV +TP ELW GR         GLF
Sbjct: 932  MEMVRSMMSYSDLPISLWGHAIETAAYILNLVPSKSVPKTPTELWTGR---------GLF 991

Query: 466  YDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDG 525
            Y P+  ++ VSTNA +LEE+++RNH P+S+L L+E+  +      R+          + G
Sbjct: 992  YSPKYKKIIVSTNAHYLEENYIRNHIPKSQLALNELRGDTI--PARIFPSEHEPEPFMVG 1051

Query: 526  ADTSGQSHPSQELRMPRRSGRVITQP 552
            AD          + +P+RSGR ++ P
Sbjct: 1052 AD----------IPLPQRSGRNVSGP 1056

[Close]
BLAST of CmoCh04G019810 vs. TrEMBL
Match: A0A151QLI3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_048877 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.6e-68
Identity = 186/546 (34.07%), Postives = 282/546 (51.65%), Query Frame = 1 

Query: 2   TNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDR 61
           T S+  +LA+ KL G N+  W   L  +L+ + L  V+ +   P P +N +  A +AY +
Sbjct: 3   TISLCSILANGKLVGSNFDDWYRTLRIVLMHEKLIDVIDKPVVPQP-ANGDEQATNAYKK 62

Query: 62  WIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNCR 121
           +++     +  +LAS+S  L ++H+ M    +I+  LK M+G  S + R +  K ++   
Sbjct: 63  YLEDYMSTKCLLLASMSSELQRQHEDMDLV-DIINHLKKMYGGQSRTARFQLSKTLFRST 122

Query: 122 MKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYN 181
           +     V  HVL M+                     ++  L KS  +    +  + I  +
Sbjct: 123 LTANAEVGPHVLKMIS--------------------LIEQLEKSGCKLGKELSQDLILQS 182

Query: 182 LTALLNELQTYQSLLTNKGQTGEANVAISKKLLRGSSSQNKSGPSTSKSVL----MKKKG 241
           L    ++     ++     +T       + K   G +  N+   +  KS +     K+KG
Sbjct: 183 LPGTFSQFIVNFNMNKMDCKTKPKKKPFAAK--GGVTKPNRKKVTVDKSDVECFYCKQKG 242

Query: 242 KGKNK----IPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKT-QQGYRAKE 301
             K      I + ++NK  + +K   +HC   GH        + EK+  K  ++GY  + 
Sbjct: 243 HWKRNCKKYIDSLKENK--QVNKTYLWHCRL-GH--------IGEKRINKLHKEGYLDQY 302

Query: 302 TLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNL 361
             E   T +CGPM ++A+G Y YFI+F DD SRYG++YLM HKSE+ E F+ +++EV+  
Sbjct: 303 DYESYTTYVCGPMKIQAKGGYSYFITFTDDMSRYGFVYLMKHKSESFEMFKRFRSEVEKQ 362

Query: 362 LGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSM 421
            GK +K LRSDRGGEY+   F D++ E+GI SQ   PG PQ NGVSERRNRTLLDMV+SM
Sbjct: 363 TGKNVKVLRSDRGGEYLSNDFLDHLKENGILSQWKPPGTPQHNGVSERRNRTLLDMVKSM 422

Query: 422 MSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK------------------ 481
           M F  LP   WGYA+E++ Y+LN VPTKS+  TPYE+WKGRK                  
Sbjct: 423 MGFTDLPINLWGYALESSAYLLNKVPTKSLSTTPYEIWKGRKPNLKHIKVWGCHALLRNK 482

Query: 482 -----------GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISK 510
                      GYPKET G  F+ P +++VFV+  ATFLE + +       ++ L EI +
Sbjct: 483 LEARSQKCRFIGYPKETMGYYFFHPSDHKVFVARGATFLEREFLAEGCHGKEIDLDEI-Q 512

[Close]
BLAST of CmoCh04G019810 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 407.5 bits (1046), Expect = 3.8e-110
Identity = 232/407 (57.00%), Postives = 278/407 (68.30%), Query Frame = 1 

Query: 205 ANVAISKKLLRGSSSQNKSGPSTSKSVLMKKK------GKGKNKIPTNRKNKVQKADKGK 264
           ANV ++ ++ R   +QNK    +S + L   +       + +  + +   N+++      
Sbjct: 417 ANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPP 476

Query: 265 CFHCNENGHWKRNCPKYLAEKKAEKTQQGYRAKETLELVHTDLCGPMNVKARGVYEYFIS 324
           C  C E    KR+            T +G RAK  LELVH+DLCGPMNVKARG YEYFIS
Sbjct: 477 CESCLEGKMTKRSF-----------TGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFIS 536

Query: 325 FIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMI 384
           FIDD+SRYG++YL+HHKSE+ EKF+EYK EV+N +GKTIKTLRSDRGGEYMD +FQDY+I
Sbjct: 537 FIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLI 596

Query: 385 EHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVP 444
           E GI+SQLSAP  PQQNGVSERRNRTLLDMVRSMMS+AQLPD FWGYA+ETA +ILN VP
Sbjct: 597 EFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETAIHILNNVP 656

Query: 445 T--------------KSVL--------------ETPYELWKGRK-----GYPKETKGGLF 504
           +              KS L              + P +L    K     GYPKE++GGLF
Sbjct: 657 SKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFVGYPKESRGGLF 716

Query: 505 YDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDG 564
           Y PQEN+VFVSTNATFLEEDH RNHQPRSK+VL E+ K ATDK        S ST+VVD 
Sbjct: 717 YHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDK-------PSSSTKVVDK 776

Query: 565 ADTSGQSHPSQELRMPRRSGRVITQPDRYLGLAETQVIIPDDGVEDP 573
           A+ S QSH SQELR+PRRSGRV+ QP+RYLGL ETQ+IIPDDGVEDP
Sbjct: 777 ANISDQSHTSQELRVPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDP 805

[Close]
BLAST of CmoCh04G019810 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 3.8e-86
Identity = 173/291 (59.45%), Postives = 225/291 (77.32%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           MT++ + +L ++K NG+NY +WK+ +NT+L+IDDL+FVL E+CP    +NA RT R+AY+
Sbjct: 1   MTSATLNMLVADKFNGNNYASWKNTINTVLIIDDLRFVLVEKCPQVSAANATRTVREAYE 60

Query: 61  RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW KAN+KAR Y+LAS+S+VLAKK++ M TA+EIM+SL+ MFGQ S+ ++H+A+KYIYN 
Sbjct: 61  RWAKANEKARAYLLASLSEVLAKKNESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEY 180
           RM +G  VREHVL+MMV+FNVAE N AVIDE +QVSFI+ SL +SF QFR+N+VMNKI Y
Sbjct: 121 RMNDGALVREHVLNMMVYFNVAEMNGAVIDEANQVSFILESLLESFLQFRSNVVMNKIAY 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--G 240
            LT LLNELQT++SL+  KGQ GEANVA S +K  RGS+S  K  PS+S +   KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKYMPSSSGNKKWKKKKGG 240

Query: 241 KG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
           +G K  +   + +K  K  KG CFHCN+ GHWKRNCPKYLAEKK  K +QG
Sbjct: 241 QGNKANLAATKTSKKAKVAKGICFHCNQEGHWKRNCPKYLAEKK--KAKQG 289

[Close]
BLAST of CmoCh04G019810 vs. NCBI nr
Match: gi|1019597807|gb|AMY96445.1| (gag/pol protein [Momordica dioica])

HSP 1 Score: 300.1 bits (767), Expect = 8.5e-78
Identity = 175/340 (51.47%), Postives = 215/340 (63.24%), Query Frame = 1 

Query: 272 CPKYLAEKKAEK--TQQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYL 331
           C   L  K  ++  T +G RA + LEL+HTD+CGPM+VKARG Y+YF+SF DD SRYGY+
Sbjct: 484 CESCLEGKMTKRPFTGKGLRASDLLELIHTDVCGPMSVKARGGYQYFLSFTDDLSRYGYV 543

Query: 332 YLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAP 391
           YL+ HKSE+ EKF+E++ EV+N +GK IKTLRSDRGGEYM   F D++ E GI SQLSAP
Sbjct: 544 YLLKHKSESFEKFKEFQAEVENEIGKKIKTLRSDRGGEYMSSEFGDHLREFGIVSQLSAP 603

Query: 392 GMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYEL 451
           G PQ NGVSERRNRTLLDMVRSMMS+A LPD FWGYA E    ILN VP+KSV ETPYEL
Sbjct: 604 GTPQCNGVSERRNRTLLDMVRSMMSYADLPDSFWGYARERERAILNRVPSKSVEETPYEL 663

Query: 452 WKGRK------------GYPKETKGGLFYDPQENRVFVST-------------------- 511
           W GRK             + K+ +        E  +FV                      
Sbjct: 664 WYGRKSSLSFLKIWGCPAHVKKLQPKKLEPRSEKCLFVGYPKETRGYYFYHPQENKVFVA 723

Query: 512 -NATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTR-VVDGADTS-GQSH- 571
            N  FLE++ +  HQP SK+VL  + +          D+ S ST+ VVD A+ +  QSH 
Sbjct: 724 TNEAFLEKEFLSRHQPGSKIVLKAVVEPLIPLDG--TDKPSSSTKVVVDKAEVNDDQSHT 783

Query: 572 -PSQELRMPRRSGRVITQPDRYLGLAETQVIIPDDGVEDP 573
              QELR+PRRSGR    P+RYLGL ETQ++I D+G EDP
Sbjct: 784 PDQQELRVPRRSGRSRRAPNRYLGLVETQIMILDNGEEDP 821

[Close]
BLAST of CmoCh04G019810 vs. NCBI nr
Match: gi|703144320|ref|XP_010108259.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis])

HSP 1 Score: 289.7 bits (740), Expect = 1.1e-74
Identity = 155/290 (53.45%), Postives = 197/290 (67.93%), Query Frame = 1 

Query: 284 TQQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFR 343
           T +G RA E L+L+H+D+CG +NV+ RG YEY+ +FIDDYSRYGY+YLM  KSE   KFR
Sbjct: 7   TAKGVRATEPLQLIHSDVCGLLNVQVRGAYEYYATFIDDYSRYGYVYLMQRKSETFGKFR 66

Query: 344 EYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNR 403
           E++ EV+  LGK IKT RSDR GEYMD  F+D++IE G+ SQL+APG PQQNGV+ERRNR
Sbjct: 67  EFRAEVEKQLGKPIKTPRSDREGEYMDQEFRDFLIEEGVVSQLTAPGTPQQNGVAERRNR 126

Query: 404 TLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRKGYPKETKGG 463
           TLLDM+RSM+S++ LP  FWG+A++TA     +      LE   E++    GYP+ T+GG
Sbjct: 127 TLLDMIRSMLSYSSLPTSFWGHALKTAIPAHVLRQKTGKLEPRSEVYI-FVGYPQGTRGG 186

Query: 464 LFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSE-ISKEATDKTTRVVDQASPSTRV 523
           LFY   + +VFVSTNATFLE D++ + +PRSK+VL E +S E   + TRVV      T V
Sbjct: 187 LFYSQADQKVFVSTNATFLEHDYMIDFKPRSKIVLEELLSDEIRPQPTRVVGPLRQKTIV 246

Query: 524 VDGADTSGQSHPSQELRMPRRSGRVITQPDRYLGLAETQVIIPDDGVEDP 573
                      P Q L  PRRS RV   PDRY G  E Q++  DDG EDP
Sbjct: 247 -----------PDQTLMAPRRSRRVSRLPDRYTG--EAQIVTADDGKEDP 282

[Close]
BLAST of CmoCh04G019810 vs. NCBI nr
Match: gi|147815925|emb|CAN77149.1| (hypothetical protein VITISV_019364 [Vitis vinifera])

HSP 1 Score: 276.2 bits (705), Expect = 1.3e-70
Identity = 139/266 (52.26%), Postives = 186/266 (69.92%), Query Frame = 1 

Query: 286  QGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREY 345
            +G RA + LEL+H+DLCGPM+V+ARG +EYF++F DDYSRYGY+YL+  KSE  EKF+ +
Sbjct: 812  KGNRANDVLELIHSDLCGPMSVQARGGFEYFVTFTDDYSRYGYIYLLCRKSECFEKFKAF 871

Query: 346  KTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTL 405
            K E++   GK IKTLRSD GGEY+   F  ++ E GI SQLSAPGMPQQNGV+ERRNRTL
Sbjct: 872  KAEMEQRHGKYIKTLRSDHGGEYISREFITFLSEQGITSQLSAPGMPQQNGVAERRNRTL 931

Query: 406  LDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRKGYPKETKGGLF 465
            ++MVRSMMS++ LP   WG+A+ETA YILN+VP+KSV +TP ELW GR         GLF
Sbjct: 932  MEMVRSMMSYSDLPISLWGHAIETAAYILNLVPSKSVPKTPTELWTGR---------GLF 991

Query: 466  YDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDG 525
            Y P+  ++ VSTNA +LEE+++RNH P+S+L L+E+  +      R+          + G
Sbjct: 992  YSPKYKKIIVSTNAHYLEENYIRNHIPKSQLALNELRGDTI--PARIFPSEHEPEPFMVG 1051

Query: 526  ADTSGQSHPSQELRMPRRSGRVITQP 552
            AD          + +P+RSGR ++ P
Sbjct: 1052 AD----------IPLPQRSGRNVSGP 1056

The following BLAST results are available for this feature:
BLAST of CmoCh04G019810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC3.6e-3641.92Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME6.2e-2835.06Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
YD23B_YEAST2.1e-1530.23Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
YB11B_YEAST2.1e-1529.07Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 2... [more]
YB12B_YEAST2.1e-1529.07Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 2... [more]
BLAST of CmoCh04G019810 vs. TrEMBL
Match NameE-valueIdentityDescription
E2GK51_BRYDI2.6e-11057.00Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
A0A165U314_9ROSI5.9e-7851.47Gag/pol protein OS=Momordica dioica PE=4 SV=1[more]
W9RZ97_9ROSA8.0e-7553.45Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis G... [more]
A5BQ76_VITVI9.2e-7152.26Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019364 PE=4 SV=1[more]
A0A151QLI3_CAJCA5.6e-6834.07Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
BLAST of CmoCh04G019810 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G019810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|299474487|gb|ADJ18449.1|3.8e-11057.00gag/pol protein [Bryonia dioica][more]
gi|659113933|ref|XP_008456826.1|3.8e-8659.45PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
gi|1019597807|gb|AMY96445.1|8.5e-7851.47gag/pol protein [Momordica dioica][more]
gi|703144320|ref|XP_010108259.1|1.1e-7453.45Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis][more]
gi|147815925|emb|CAN77149.1|1.3e-7052.26hypothetical protein VITISV_019364 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR001878Znf_CCHC
IPR012337RNaseH-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G019810.1CmoCh04G019810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 293..408
score: 4.3
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 289..454
score: 22
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 253..275
score: 2.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 257..274
score: 3.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 258..274
score: 0.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 258..274
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 247..278
score: 1.4
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 286..447
score: 3.0
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 289..448
score: 4.68
NoneNo IPR availableunknownCoilCoilcoord: 335..355
scor
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 12..554
score: 7.4E
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 12..554
score: 7.4E
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 62..193
score: 7.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G019810Cucumber (Chinese Long) v3cmocucB0884
CmoCh04G019810Watermelon (97103) v2cmowmbB710
CmoCh04G019810Wax gourdcmowgoB0906
CmoCh04G019810Wax gourdcmowgoB0914
CmoCh04G019810Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G019810Wild cucumber (PI 183967)cmocpiB740
CmoCh04G019810Cucumber (Chinese Long) v2cmocuB732
CmoCh04G019810Watermelon (Charleston Gray)cmowcgB634
CmoCh04G019810Watermelon (97103) v1cmowmB727
CmoCh04G019810Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G019810Bottle gourd (USVL1VR-Ls)cmolsiB621
CmoCh04G019810Bottle gourd (USVL1VR-Ls)cmolsiB623
CmoCh04G019810Cucumber (Gy14) v2cgybcmoB661
CmoCh04G019810Silver-seed gourdcarcmoB0478