CmoCh04G019060 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G019060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING finger protein
Location	Cmo_Chr04 : 9716025 .. 9716684 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTGTACGTCGATGGACACCAACCGTTGGCATCGCCACGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGGTCTGCACTTCCCTCCTAACTTTTACTTTTTCCAGAGACAGACAGATCAAATTCATTAACAATGAAACCATGGCAGCTGTGATATACCCTTCACTTAGGCAACTTCGAAGTGGGCACCTCAAGTCAAAAGAAGAGACTTCTTCTAGGAAGAGAACAGAAGATCAGAAGGGGCTATCTAATGACGATCTTCAGAGGGATGAGGAGTGTGGGATATGCATGGAAAACTGCAGAGATGTTGTGTTGCCAAATTGTGGCCATTCGATGTGCCTCAGCTGCTTTCAGGACTGGTACTAACAATTTTTCTTCCTTCTCAGCCTCAAACTTTCTTATTATCAGCTAACAACAGGAGTTCTGTCTGTTGTAATCTTGTCTGCAGGAGTCTGAGGTCGCGTTCCTGTCCCTTCTGCCGTAACTGTCTAAATAGGTTGAGCGCCAGGGACCTGTGGGTTCTTACAAGCGACACCGACATTGTCGACTCGGAAACTCTTACCAAGGAAAATCTAATACATTTCTACCTTTATATCGAAAGCCTGCCACTGTTTCAACCAGATGTGAGTATTTTAATACCAGATTACATGTTGTGA

mRNA sequence

ATGCAGGTGTACGTCGATGGACACCAACCGTTGGCATCGCCACGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGCTGTGATATACCCTTCACTTAGGCAACTTCGAAGTGGGCACCTCAAGTCAAAAGAAGAGACTTCTTCTAGGAAGAGAACAGAAGATCAGAAGGGGCTATCTAATGACGATCTTCAGAGGGATGAGGAGTGTGGGATATGCATGGAAAACTGCAGAGATGTTGTGTTGCCAAATTGTGGCCATTCGATGTGCCTCAGCTGCTTTCAGGACTGGAGTCTGAGGTCGCGTTCCTGTCCCTTCTGCCGTAACTGTCTAAATAGGTTGAGCGCCAGGGACCTGTGGGTTCTTACAAGCGACACCGACATTGTCGACTCGGAAACTCTTACCAAGGAAAATCTAATACATTTCTACCTTTATATCGAAAGCCTGCCACTGTTTCAACCAGATGTGAGTATTTTAATACCAGATTACATGTTGTGA

Coding sequence (CDS)

ATGCAGGTGTACGTCGATGGACACCAACCGTTGGCATCGCCACGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGCTGTGATATACCCTTCACTTAGGCAACTTCGAAGTGGGCACCTCAAGTCAAAAGAAGAGACTTCTTCTAGGAAGAGAACAGAAGATCAGAAGGGGCTATCTAATGACGATCTTCAGAGGGATGAGGAGTGTGGGATATGCATGGAAAACTGCAGAGATGTTGTGTTGCCAAATTGTGGCCATTCGATGTGCCTCAGCTGCTTTCAGGACTGGAGTCTGAGGTCGCGTTCCTGTCCCTTCTGCCGTAACTGTCTAAATAGGTTGAGCGCCAGGGACCTGTGGGTTCTTACAAGCGACACCGACATTGTCGACTCGGAAACTCTTACCAAGGAAAATCTAATACATTTCTACCTTTATATCGAAAGCCTGCCACTGTTTCAACCAGATGTGAGTATTTTAATACCAGATTACATGTTGTGA

Homology

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BLAST of CmoCh04G019060 vs. TrEMBL
Match: A0A0A0KQ18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591730 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-74
Identity = 136/163 (83.44%), Postives = 152/163 (93.25%), Query Frame = 1


Query: 2   QVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHLKSKEETSSRKRTEDQKGLSND 61
           +VYVDG +PL SPRERK TLKEFYAVIYPSLRQL+SG ++SKEETSSRK TED++ LSN+
Sbjct: 52  KVYVDG-KPLVSPRERKTTLKEFYAVIYPSLRQLQSGRVESKEETSSRKITEDEQKLSNE 111

Query: 62  DLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNRLSARDLWVL 121
           DLQRDEECGICMENCRDVVLPNCGHSMCLSCF+DW+ RSRSCPFCRNCLNRLS RDLW+L
Sbjct: 112 DLQRDEECGICMENCRDVVLPNCGHSMCLSCFKDWNARSRSCPFCRNCLNRLSTRDLWIL 171

Query: 122 TSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILIPDYML 165
           TSDT+I+DSETL KENL+HFYLY ESLPLFQPD++I IPDYML
Sbjct: 172 TSDTEIIDSETLAKENLLHFYLYTESLPLFQPDMNIFIPDYML 213

[Close]

BLAST of CmoCh04G019060 vs. TrEMBL
Match: V4SU56_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032536mg PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.3e-50
Identity = 102/172 (59.30%), Postives = 127/172 (73.84%), Query Frame = 1


Query: 1   MQVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHLKSKE--------ETSSRKRT 60
           +QVYVDG  P  S +ERKATL+EFYA+IYPSLRQL S   + ++        E SSRKR 
Sbjct: 17  VQVYVDG-MPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRV 76

Query: 61  EDQKGLSNDDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNR 120
           E+++ LS+ DL R++ECGICMENC  +VLPNCGHS+C++CF DW+ RS+SCPFCR  L R
Sbjct: 77  EERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCPFCRGSLQR 136

Query: 121 LSARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILIPDYML 165
           +S+ DLWVL SD DI+D  T+ KENL  FYLYIE+LPL  PD    + DYML
Sbjct: 137 VSSADLWVLISDIDIIDMVTIAKENLRRFYLYIENLPLIVPDTHPFVYDYML 187

[Close]

BLAST of CmoCh04G019060 vs. TrEMBL
Match: V4VFV0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032536mg PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-49
Identity = 101/171 (59.06%), Postives = 126/171 (73.68%), Query Frame = 1


Query: 2   QVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHLKSKE--------ETSSRKRTE 61
           +VYVDG  P  S +ERKATL+EFYA+IYPSLRQL S   + ++        E SSRKR E
Sbjct: 82  KVYVDG-MPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVE 141

Query: 62  DQKGLSNDDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNRL 121
           +++ LS+ DL R++ECGICMENC  +VLPNCGHS+C++CF DW+ RS+SCPFCR  L R+
Sbjct: 142 ERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCPFCRGSLQRV 201

Query: 122 SARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILIPDYML 165
           S+ DLWVL SD DI+D  T+ KENL  FYLYIE+LPL  PD    + DYML
Sbjct: 202 SSADLWVLISDIDIIDMVTIAKENLRRFYLYIENLPLIVPDTHPFVYDYML 251

[Close]

BLAST of CmoCh04G019060 vs. TrEMBL
Match: A0A061EEU1_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010696 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.3e-48
Identity = 97/170 (57.06%), Postives = 122/170 (71.76%), Query Frame = 1


Query: 2   QVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHLKSKE-------ETSSRKRTED 61
           + YVDG  P  S +ERKAT +EFYAVIYP LRQL    +K ++       E  SRKR ED
Sbjct: 82  KAYVDGI-PALSSKERKATQREFYAVIYPLLRQLGDEFIKLEDNKKNGCTEVLSRKRVED 141

Query: 62  QKGLSNDDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNRLS 121
           +K +SN DL+RD+ECGICMENC  +VLPNCGH++C+SCF DW++RS+SCPFCR  L R+S
Sbjct: 142 RKRVSNKDLERDDECGICMENCTKMVLPNCGHALCISCFHDWNVRSQSCPFCRGSLKRVS 201

Query: 122 ARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILIPDYML 165
           ++DLWVLTS  DI+D  TL KENL   YLY+E LP   P+    + DYM+
Sbjct: 202 SKDLWVLTSGNDIIDMVTLAKENLRRLYLYMEKLPFVMPETHHYVSDYMI 250

[Close]

BLAST of CmoCh04G019060 vs. TrEMBL
Match: B9HTE4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s06280g PE=4 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 7.0e-48
Identity = 93/170 (54.71%), Postives = 123/170 (72.35%), Query Frame = 1


Query: 2   QVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRS-------GHLKSKEETSSRKRTED 61
           +VYVDG  P  S +E+KA+L+EFYA+IYPSLRQL          H +S  +  SRKR ED
Sbjct: 82  KVYVDG-MPSLSSKEKKASLREFYAIIYPSLRQLEGEFIEVEDNHKRSSTDVLSRKRMED 141

Query: 62  QKGLSNDDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNRLS 121
           Q+ LS  D +RDEECGICMEN   +VLPNCGHS+C+SCF DW++RS+SCPFCR  L R+S
Sbjct: 142 QRKLSESDFERDEECGICMENSAKMVLPNCGHSLCISCFHDWNVRSQSCPFCRGSLKRMS 201

Query: 122 ARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILIPDYML 165
             DLWVL S+ D++D+  L +EN+ HFYLY+++LP   P+   ++ DYM+
Sbjct: 202 CTDLWVLISNDDVIDTVALAEENIRHFYLYMDNLPFLVPETQAILFDYMI 250

[Close]

BLAST of CmoCh04G019060 vs. TAIR10
Match: AT1G13195.1 (AT1G13195.1 RING/U-box superfamily protein)

HSP 1 Score: 151.4 bits (381), Expect = 4.9e-37
Identity = 78/168 (46.43%), Postives = 110/168 (65.48%), Query Frame = 1


Query: 2   QVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHLKSKEETS--------SRKRTE 61
           +V  DG QP  +   RKAT+ EFY VI PSL+ L S +L   E T         S+K T+
Sbjct: 87  KVQSDG-QPKLTTHGRKATISEFYGVILPSLQLLHS-NLDELETTDIGFDLKRLSKKITK 146

Query: 62  DQKG--LSNDDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLN 121
           + +    SN  L+R+EECGIC+E C  +VLPNC HSMC+ C+++W+L+S+SCPFCR  + 
Sbjct: 147 EARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQSCPFCRGSMK 206

Query: 122 RLSARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILI 160
           R+++ DLWVL  D D+VD+ T ++E+L  FYLYI SLP   P+   ++
Sbjct: 207 RVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPEALFVV 252

[Close]

BLAST of CmoCh04G019060 vs. TAIR10
Match: AT1G24440.1 (AT1G24440.1 RING/U-box superfamily protein)

HSP 1 Score: 147.9 bits (372), Expect = 5.5e-36
Identity = 69/153 (45.10%), Postives = 102/153 (66.67%), Query Frame = 1


Query: 17  RKATLKEFYAVIYPSLRQLRSGHLKSKEE----------TSSRKRTEDQKGLSNDDLQRD 76
           RKAT++EFY VI PSL +L        +E          T  +   E  + +++ DL+R+
Sbjct: 93  RKATIREFYGVILPSLERLHINFADLPDESLWYPNPKAITKKQYDIEGSRYMNSIDLERE 152

Query: 77  EECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNRLSARDLWVLTSDTD 136
           +ECGIC+E C  +VLPNC H+MC+ C+++W+ +S SCPFCR  + R+++ DLWVLT D D
Sbjct: 153 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSIKRVNSEDLWVLTCDED 212

Query: 137 IVDSETLTKENLIHFYLYIESLPLFQPDVSILI 160
           +VD ET+TKE+L+ FYL+I SLP   P+ + L+
Sbjct: 213 VVDPETVTKEDLLRFYLHINSLPKDYPEAAFLV 245

[Close]

BLAST of CmoCh04G019060 vs. TAIR10
Match: AT3G47160.2 (AT3G47160.2 RING/U-box superfamily protein)

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-34
Identity = 76/159 (47.80%), Postives = 101/159 (63.52%), Query Frame = 1


Query: 4   YVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSG-----HLKSKEETSSRKRTEDQKG- 63
           Y DG   + S  ERK ++K+FYAVI+PSL QL  G       K KE    R R +D+   
Sbjct: 87  YADGKTTM-SVYERKTSIKDFYAVIFPSLLQLERGITDLDDRKQKEVCKIRYRNKDETEK 146

Query: 64  --LSNDDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNRLSA 123
             LS  D++R+EECGICME    VVLPNC HS+C+ C++DW  RS SCPFCR+ L R+++
Sbjct: 147 VKLSEIDIEREEECGICMEMNNMVVLPNCTHSLCIKCYRDWHGRSESCPFCRDSLKRVNS 206

Query: 124 RDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPD 155
            DLW+L   +D V+  T+ +EN    ++YIE LPL  PD
Sbjct: 207 GDLWMLMEKSDTVNMYTIERENKKRLFVYIEKLPLVVPD 244

[Close]

BLAST of CmoCh04G019060 vs. TAIR10
Match: AT5G58787.1 (AT5G58787.1 RING/U-box superfamily protein)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-34
Identity = 72/156 (46.15%), Postives = 98/156 (62.82%), Query Frame = 1


Query: 4   YVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSG-----HLKSKEETSSRKRTEDQKGL 63
           Y DG   + S  ERKA+++EF AVI PSL QL+ G       K KE    R R +D+  +
Sbjct: 75  YADGKTTM-SVYERKASIREFQAVILPSLSQLQRGVTDIDDSKQKEVCKMRYRKKDESEM 134

Query: 64  SNDDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNRLSARDL 123
           S  +++R+EECGICME    VVLPNC HS+C+ C++DW  RS+SCPFCR+ L R+ + DL
Sbjct: 135 SEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQSCPFCRDSLKRVDSGDL 194

Query: 124 WVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPD 155
           W+     D V+   + +EN    ++YIE LPL  PD
Sbjct: 195 WMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPD 229

[Close]

BLAST of CmoCh04G019060 vs. TAIR10
Match: AT5G01520.1 (AT5G01520.1 RING/U-box superfamily protein)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-33
Identity = 74/165 (44.85%), Postives = 104/165 (63.03%), Query Frame = 1


Query: 2   QVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSG-----HLKSKEETSSRKRTEDQ- 61
           + YVDG   + S  ERK +++EFY V++PSL QL  G       K KE    R R +D+ 
Sbjct: 72  KAYVDGKTTM-SLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEICDKRYRKKDRT 131

Query: 62  -KG-LSNDDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNRL 121
            KG +S  DL+R+EECGIC+E    VVLP C HSMC++C+++W  RS+SCPFCR  L R+
Sbjct: 132 DKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSCPFCRGSLKRV 191

Query: 122 SARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSIL 159
           ++ DLW+ T   +I D   + KENL    +YI+ LPL   D +++
Sbjct: 192 NSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLV 235

[Close]

BLAST of CmoCh04G019060 vs. NCBI nr
Match: gi|449435031|ref|XP_004135299.1| (PREDICTED: peroxisome biogenesis factor 10-like isoform X1 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 1.6e-74
Identity = 136/163 (83.44%), Postives = 152/163 (93.25%), Query Frame = 1


Query: 2   QVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHLKSKEETSSRKRTEDQKGLSND 61
           +VYVDG +PL SPRERK TLKEFYAVIYPSLRQL+SG ++SKEETSSRK TED++ LSN+
Sbjct: 82  KVYVDG-KPLVSPRERKTTLKEFYAVIYPSLRQLQSGRVESKEETSSRKITEDEQKLSNE 141

Query: 62  DLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNRLSARDLWVL 121
           DLQRDEECGICMENCRDVVLPNCGHSMCLSCF+DW+ RSRSCPFCRNCLNRLS RDLW+L
Sbjct: 142 DLQRDEECGICMENCRDVVLPNCGHSMCLSCFKDWNARSRSCPFCRNCLNRLSTRDLWIL 201

Query: 122 TSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILIPDYML 165
           TSDT+I+DSETL KENL+HFYLY ESLPLFQPD++I IPDYML
Sbjct: 202 TSDTEIIDSETLAKENLLHFYLYTESLPLFQPDMNIFIPDYML 243

[Close]

BLAST of CmoCh04G019060 vs. NCBI nr
Match: gi|778704758|ref|XP_011655587.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8-like isoform X2 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 1.6e-74
Identity = 136/163 (83.44%), Postives = 152/163 (93.25%), Query Frame = 1


Query: 2   QVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHLKSKEETSSRKRTEDQKGLSND 61
           +VYVDG +PL SPRERK TLKEFYAVIYPSLRQL+SG ++SKEETSSRK TED++ LSN+
Sbjct: 52  KVYVDG-KPLVSPRERKTTLKEFYAVIYPSLRQLQSGRVESKEETSSRKITEDEQKLSNE 111

Query: 62  DLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNRLSARDLWVL 121
           DLQRDEECGICMENCRDVVLPNCGHSMCLSCF+DW+ RSRSCPFCRNCLNRLS RDLW+L
Sbjct: 112 DLQRDEECGICMENCRDVVLPNCGHSMCLSCFKDWNARSRSCPFCRNCLNRLSTRDLWIL 171

Query: 122 TSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILIPDYML 165
           TSDT+I+DSETL KENL+HFYLY ESLPLFQPD++I IPDYML
Sbjct: 172 TSDTEIIDSETLAKENLLHFYLYTESLPLFQPDMNIFIPDYML 213

[Close]

BLAST of CmoCh04G019060 vs. NCBI nr
Match: gi|659090610|ref|XP_008446106.1| (PREDICTED: peroxisome biogenesis factor 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 3.6e-74
Identity = 136/163 (83.44%), Postives = 151/163 (92.64%), Query Frame = 1


Query: 2   QVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHLKSKEETSSRKRTEDQKGLSND 61
           +VYVDG +PL SPRERKATLKEFYAVIYPSLRQL+SG + SKEETS RK TED++ LSN+
Sbjct: 82  KVYVDG-KPLVSPRERKATLKEFYAVIYPSLRQLQSGRVDSKEETSPRKITEDEQKLSNE 141

Query: 62  DLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNRLSARDLWVL 121
           DLQRDEECGICMENCRDVVLPNCGHSMCL+CF+DWS RSRSCPFCRNCLNRLS RDLW+L
Sbjct: 142 DLQRDEECGICMENCRDVVLPNCGHSMCLNCFKDWSARSRSCPFCRNCLNRLSTRDLWIL 201

Query: 122 TSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILIPDYML 165
           TSDT+I+DSETL KENL+HFYLY ESLPLFQPD++I IPDYML
Sbjct: 202 TSDTEIIDSETLAKENLLHFYLYTESLPLFQPDMNIFIPDYML 243

[Close]

BLAST of CmoCh04G019060 vs. NCBI nr
Match: gi|659090614|ref|XP_008446108.1| (PREDICTED: peroxisome biogenesis factor 10-like isoform X4 [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 3.6e-74
Identity = 136/163 (83.44%), Postives = 151/163 (92.64%), Query Frame = 1


Query: 2   QVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHLKSKEETSSRKRTEDQKGLSND 61
           +VYVDG +PL SPRERKATLKEFYAVIYPSLRQL+SG + SKEETS RK TED++ LSN+
Sbjct: 52  KVYVDG-KPLVSPRERKATLKEFYAVIYPSLRQLQSGRVDSKEETSPRKITEDEQKLSNE 111

Query: 62  DLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLRSRSCPFCRNCLNRLSARDLWVL 121
           DLQRDEECGICMENCRDVVLPNCGHSMCL+CF+DWS RSRSCPFCRNCLNRLS RDLW+L
Sbjct: 112 DLQRDEECGICMENCRDVVLPNCGHSMCLNCFKDWSARSRSCPFCRNCLNRLSTRDLWIL 171

Query: 122 TSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILIPDYML 165
           TSDT+I+DSETL KENL+HFYLY ESLPLFQPD++I IPDYML
Sbjct: 172 TSDTEIIDSETLAKENLLHFYLYTESLPLFQPDMNIFIPDYML 213

[Close]

BLAST of CmoCh04G019060 vs. NCBI nr
Match: gi|659090608|ref|XP_008446105.1| (PREDICTED: uncharacterized protein LOC103488931 isoform X1 [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 9.3e-70
Identity = 136/190 (71.58%), Postives = 151/190 (79.47%), Query Frame = 1


Query: 2   QVYVDGHQPLASPRERKATLKEFY---------------------------AVIYPSLRQ 61
           +VYVDG +PL SPRERKATLKEFY                           AVIYPSLRQ
Sbjct: 82  KVYVDG-KPLVSPRERKATLKEFYGPYFSPNFFFSRIEQIGSKLFTIETMAAVIYPSLRQ 141

Query: 62  LRSGHLKSKEETSSRKRTEDQKGLSNDDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQ 121
           L+SG + SKEETS RK TED++ LSN+DLQRDEECGICMENCRDVVLPNCGHSMCL+CF+
Sbjct: 142 LQSGRVDSKEETSPRKITEDEQKLSNEDLQRDEECGICMENCRDVVLPNCGHSMCLNCFK 201

Query: 122 DWSLRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPD 165
           DWS RSRSCPFCRNCLNRLS RDLW+LTSDT+I+DSETL KENL+HFYLY ESLPLFQPD
Sbjct: 202 DWSARSRSCPFCRNCLNRLSTRDLWILTSDTEIIDSETLAKENLLHFYLYTESLPLFQPD 261

The following BLAST results are available for this feature:

BLAST of CmoCh04G019060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G019060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ18_CUCSA	1.1e-74	83.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591730 PE=4 SV=1	[more]
V4SU56_9ROSI	3.3e-50	59.30	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032536mg PE=4 SV=1	[more]
V4VFV0_9ROSI	1.7e-49	59.06	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032536mg PE=4 SV=1	[more]
A0A061EEU1_THECC	5.3e-48	57.06	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010696 PE=4 SV=1	[more]
B9HTE4_POPTR	7.0e-48	54.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s06280g PE=4 SV=2	[more]

BLAST of CmoCh04G019060 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G13195.1	4.9e-37	46.43	RING/U-box superfamily protein	[more]
AT1G24440.1	5.5e-36	45.10	RING/U-box superfamily protein	[more]
AT3G47160.2	1.3e-34	47.80	RING/U-box superfamily protein	[more]
AT5G58787.1	3.0e-34	46.15	RING/U-box superfamily protein	[more]
AT5G01520.1	1.1e-33	44.85	RING/U-box superfamily protein	[more]

BLAST of CmoCh04G019060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435031\|ref\|XP_004135299.1\|	1.6e-74	83.44	PREDICTED: peroxisome biogenesis factor 10-like isoform X1 [Cucumis sativus]	[more]
gi\|778704758\|ref\|XP_011655587.1\|	1.6e-74	83.44	PREDICTED: E3 ubiquitin-protein ligase RNF8-like isoform X2 [Cucumis sativus]	[more]
gi\|659090610\|ref\|XP_008446106.1\|	3.6e-74	83.44	PREDICTED: peroxisome biogenesis factor 10-like isoform X2 [Cucumis melo]	[more]
gi\|659090614\|ref\|XP_008446108.1\|	3.6e-74	83.44	PREDICTED: peroxisome biogenesis factor 10-like isoform X4 [Cucumis melo]	[more]
gi\|659090608\|ref\|XP_008446105.1\|	9.3e-70	71.58	PREDICTED: uncharacterized protein LOC103488931 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G019060.1	CmoCh04G019060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 69..106 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 69..107 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 51..112 score: 1.7
None	No IPR available	PANTHER	PTHR15315	RING FINGER PROTEIN 41, 151	coord: 1..164 score: 4.7
None	No IPR available	PANTHER	PTHR15315:SF22	SUBFAMILY NOT NAMED	coord: 1..164 score: 4.7
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 66..109 score: 4.
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 60..111 score: 1.96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G019060	Cla009997	Watermelon (97103) v1	cmowmB694
CmoCh04G019060	MELO3C011907	Melon (DHL92) v3.5.1	cmomeB632
CmoCh04G019060	ClCG05G026220	Watermelon (Charleston Gray)	cmowcgB655
CmoCh04G019060	Cp4.1LG11g00520	Cucurbita pepo (Zucchini)	cmocpeB656

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G019060	Wax gourd	cmowgoB0868
CmoCh04G019060	Wax gourd	cmowgoB0890
CmoCh04G019060	Cucurbita moschata (Rifu)	cmocmoB147
CmoCh04G019060	Cucurbita moschata (Rifu)	cmocmoB341
CmoCh04G019060	Cucurbita moschata (Rifu)	cmocmoB472
CmoCh04G019060	Cucumber (Gy14) v1	cgycmoB0123
CmoCh04G019060	Cucumber (Gy14) v1	cgycmoB1092
CmoCh04G019060	Cucurbita maxima (Rimu)	cmacmoB189
CmoCh04G019060	Cucurbita maxima (Rimu)	cmacmoB422
CmoCh04G019060	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G019060	Cucurbita maxima (Rimu)	cmacmoB785
CmoCh04G019060	Wild cucumber (PI 183967)	cmocpiB693
CmoCh04G019060	Wild cucumber (PI 183967)	cmocpiB748
CmoCh04G019060	Cucumber (Chinese Long) v2	cmocuB682
CmoCh04G019060	Cucumber (Chinese Long) v2	cmocuB739
CmoCh04G019060	Melon (DHL92) v3.5.1	cmomeB673
CmoCh04G019060	Watermelon (Charleston Gray)	cmowcgB683
CmoCh04G019060	Watermelon (97103) v1	cmowmB666
CmoCh04G019060	Cucurbita pepo (Zucchini)	cmocpeB646
CmoCh04G019060	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G019060	Cucurbita pepo (Zucchini)	cmocpeB710
CmoCh04G019060	Bottle gourd (USVL1VR-Ls)	cmolsiB661
CmoCh04G019060	Bottle gourd (USVL1VR-Ls)	cmolsiB698
CmoCh04G019060	Cucumber (Gy14) v2	cgybcmoB232
CmoCh04G019060	Cucumber (Gy14) v2	cgybcmoB653
CmoCh04G019060	Melon (DHL92) v3.6.1	cmomedB721
CmoCh04G019060	Melon (DHL92) v3.6.1	cmomedB761
CmoCh04G019060	Silver-seed gourd	carcmoB0343
CmoCh04G019060	Silver-seed gourd	carcmoB0685
CmoCh04G019060	Silver-seed gourd	carcmoB0858
CmoCh04G019060	Silver-seed gourd	carcmoB0945
CmoCh04G019060	Cucumber (Chinese Long) v3	cmocucB0808
CmoCh04G019060	Cucumber (Chinese Long) v3	cmocucB0875
CmoCh04G019060	Watermelon (97103) v2	cmowmbB730
CmoCh04G019060	Watermelon (97103) v2	cmowmbB763