CmoCh04G018890 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G018890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nucleoporin GLE1
Location	Cmo_Chr04 : 9623089 .. 9625074 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCACTTGGAAGAACTCAAGTAATTTAGGAAATGGAAGTGTGAAGTCTTTAGTCGCGAGGGTTCTCTTCTTCACTTTTCTGAACCTTCTTCTTCGGCACCTCTTCTTGCTGGACGGTGAGCCGCGGTGCTGTTCCGTCGATTGTGCAAGAGGAAGACACAGCTGCTCTTTGTCTCGTGATCCGATGAATTGCTGATTTCAACTATGTTTTTAAAAAAAAATTCTCGAATCGATATCTCTCTCTGAAGTTTCAGACTAGTTGTTTCTCCTCCGGTTCCGATTGTCCTGGGACTGATTCTTTTTCTCTTCTGCACAGCCCCGGATCCGCCAGGGGCGTCCTTTTGGTCATTGAAGCATTCGAAGTTTGCTTATTGAAGCCATGTAAGTTCTACATTCTTTCACATTCAATTTTTGATATGGTAATTGTACGTTTTCAAGTTGATTCTATGGTTAGGGCAAAAATTGGAAGCTATTATTCGGGCATTTGGTTGCGTTGTAGACGTAGTATCTTTGTGTACATGCCTGTTATAGATGATTTCAAACTAGCTTATGTTTGGCAAACATAGTTTAACTTAGCTATTTTGTCACGTTGAACGACATCCAGGACCCTCATTATCACTTGTGTTATTCTTTTGTTTGTGTTTCGTTTTCAGGAGTCCGGTGAAGTTGACCCTTCGCTGCCCTTCTAGGGTAGGACAAGTTACAGCTGATCCACAGCCTGATTTTAGCTTTGATGATTTGCGAGTGGAACTTTATTCTTTGGAGGAGAAGCTAAAGACGTCCACAACTCCTTTCACAAAAACATGTTCACGGTATCATAGTTTTTTATATTTGGAAAAGAACGAATGAATTTGTGCATGCTTCTAGTTTTCTTTGTTGAAGAATTTGTGGTTTATATGTCAATAGAGACTTTCCACTCATAAAAACTACGAAGAGAAGCTCCAAGCCTTTTGTAATGGGTGTGTATGAGGATGAGCTACAGAACATATTTAACGATGGTGAAGTAGTTTGTGACCAAGGTTCAAATGCTAAGCGCTTTAATTGTGATGGATGTTTTCTCAGGTATTTTATTCTGTTGCCGCTTCCAACTTTATTTATTTTTTCTTTTAAAGTTTAAGTTGCTTTTATTTAATGAATATTTATGCGTAATCTTCCCCGCATATGTTTTTCTATGAGAAATTAATAGTGGAAATATGCTTTGCCTGGTTTTGTTTAACTTTTGAGGGCCTGTTCATGTTTTTAGACTCTTTTTTGTCATGTGATGTGATTATTATTATAAGCTACTGAATTTCGATCTGAACTATTACATATCTGGCTTTGTGCCATGAAGTTTTAATATTTTTCTTTCCTTTTAGCGATAGCGAAGATTCTGACAATGAATCAACTCTTGGAACACGAGCCCATCTGATGGAGGACGTGGATTTAGTGGAAAGTTCTTTAGCTCAGCTAACAGATGATCATCTGCTTAACACGAAGGTATTTAGGGGAGTATATAATTTATATTTCTCTCTTTTATTGACGTCTACACATTGTTTAGCATGTAAATATGAATGCATCATACATTTCATTTCTTCATGACATTTTGTGTCCATCTCTCATGTCTTTACCTACCCTTTTTAAAGTTAGTTTGTTATCTCTAGTTGTTTCTTGGAGTTTTAGACACTGTATTGGATCATCTAAGATATTGTGAAGACATGTATGTGAAATTAGTTAAACTGGCATTTTTTTGGGTAAAAAACTCATTAATTATATTATTTCTATCTGGATGTTGTCATAGCTGTATTCTCATTTAGTCTGACGTCTCTGACTTAAAACTTATGAGACACTAGAAATTATGAAGAATTTTTGATTTCAACCATCGAGAGACAAAGTGGATGGATATCTAGCTAATCTTCCCTTCTGCTAATGCTCTTCTAAATTAGTTTATAAACAGGAGGAAATCAGGAACCAACTTGGAAGGTTGGAGACCAACCTCACTACTTTAA

mRNA sequence

AAATCACTTGGAAGAACTCAAGTAATTTAGGAAATGGAAGTGTGAAGTCTTTAGTCGCGAGGGTTCTCTTCTTCACTTTTCTGAACCTTCTTCTTCGGCACCTCTTCTTGCTGGACGGTGAGCCGCGGTGCTGTTCCGTCGATTGTGCAAGAGGAAGACACAGCTGCTCTTTGTCTCGTGATCCGATGAATTGCTGATTTCAACTATGTTTTTAAAAAAAAATTCTCGAATCGATATCTCTCTCTGAAGTTTCAGACTAGTTGTTTCTCCTCCGGTTCCGATTGTCCTGGGACTGATTCTTTTTCTCTTCTGCACAGCCCCGGATCCGCCAGGGGCGTCCTTTTGGTCATTGAAGCATTCGAAGTTTGCTTATTGAAGCCATGAGTCCGGTGAAGTTGACCCTTCGCTGCCCTTCTAGGGTAGGACAAGTTACAGCTGATCCACAGCCTGATTTTAGCTTTGATGATTTGCGAGTGGAACTTTATTCTTTGGAGGAGAAGCTAAAGACGTCCACAACTCCTTTCACAAAAACATGTTCACGAGACTTTCCACTCATAAAAACTACGAAGAGAAGCTCCAAGCCTTTTGTAATGGGTGTGTATGAGGATGAGCTACAGAACATATTTAACGATGGTGAAGTAGTTTGTGACCAAGGTTCAAATGCTAAGCGCTTTAATTGTGATGGATGTTTTCTCAGCGATAGCGAAGATTCTGACAATGAATCAACTCTTGGAACACGAGCCCATCTGATGGAGGACGTGGATTTAGTGGAAAGTTCTTTAGCTCAGCTAACAGATGATCATCTGCTTAACACGAAGTTTATAAACAGGAGGAAATCAGGAACCAACTTGGAAGGTTGGAGACCAACCTCACTACTTTAA

Coding sequence (CDS)

ATGAGTCCGGTGAAGTTGACCCTTCGCTGCCCTTCTAGGGTAGGACAAGTTACAGCTGATCCACAGCCTGATTTTAGCTTTGATGATTTGCGAGTGGAACTTTATTCTTTGGAGGAGAAGCTAAAGACGTCCACAACTCCTTTCACAAAAACATGTTCACGAGACTTTCCACTCATAAAAACTACGAAGAGAAGCTCCAAGCCTTTTGTAATGGGTGTGTATGAGGATGAGCTACAGAACATATTTAACGATGGTGAAGTAGTTTGTGACCAAGGTTCAAATGCTAAGCGCTTTAATTGTGATGGATGTTTTCTCAGCGATAGCGAAGATTCTGACAATGAATCAACTCTTGGAACACGAGCCCATCTGATGGAGGACGTGGATTTAGTGGAAAGTTCTTTAGCTCAGCTAACAGATGATCATCTGCTTAACACGAAGTTTATAAACAGGAGGAAATCAGGAACCAACTTGGAAGGTTGGAGACCAACCTCACTACTTTAA

Homology

[Close]

BLAST of CmoCh04G018890 vs. Swiss-Prot
Match: GLE1_ARATH (Protein GLE1 OS=Arabidopsis thaliana GN=GLE1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-07
Identity = 45/149 (30.20%), Postives = 72/149 (48.32%), Query Frame = 1


Query: 10  CPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTST---TPFTKTCSRDFPLIKTTKRSS 69
           CP  V  ++ DP+P+++F+ L  E+ S+E+KL   +    P T T  R         R  
Sbjct: 9   CPKSVDGISIDPEPNWNFESLVAEIASVEKKLNGFSMYPQPITNTTLR-------MGRRG 68

Query: 70  KPFVMGVYEDELQNIFNDGEVVCDQGSN---------AKRFNCDGCFLSDSEDSDNESTL 129
             FVM V EDE+++  ++GE   D+             KRF CD  +LSD  D + +   
Sbjct: 69  GGFVMHVSEDEMES--DEGEESDDEEEEEDHSQICTAGKRFACDELYLSDESDEEFDH-- 128

Query: 130 GTRAHLMEDVDLVESSLAQLTDDHLLNTK 147
               ++M  + L ES+L ++ +DH    K
Sbjct: 129 -EPEYMMNKLGLAESALYEVINDHQTEIK 145

[Close]

BLAST of CmoCh04G018890 vs. TrEMBL
Match: A0A0A0KS46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G593410 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 4.6e-55
Identity = 113/154 (73.38%), Postives = 127/154 (82.47%), Query Frame = 1


Query: 1   MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIK 60
           MSPVKLTLRCPS++GQVT DP PDFSFDDLRVEL+SLEEKL  ST PF KTCSRDFP+ K
Sbjct: 1   MSPVKLTLRCPSKIGQVTVDPDPDFSFDDLRVELHSLEEKLNKSTMPFKKTCSRDFPVTK 60

Query: 61  TTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNCDGCFLSDSEDSDNESTLGTR 120
           T KRS KPF+MGVYEDEL+ IFND EVV +  SNA RFNCDG FLSDSEDSDN+ST   +
Sbjct: 61  TLKRSFKPFIMGVYEDELKEIFND-EVVREPSSNANRFNCDGIFLSDSEDSDNDSTPEAQ 120

Query: 121 AHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG 155
           A+L ED+DLVESSLA+LT DH+LN K   R + G
Sbjct: 121 AYLKEDMDLVESSLAELTHDHMLNIKEEIRNQLG 153

[Close]

BLAST of CmoCh04G018890 vs. TrEMBL
Match: W9RMY7_9ROSA (Nucleoporin GLE1 OS=Morus notabilis GN=L484_027656 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-24
Identity = 72/156 (46.15%), Postives = 98/156 (62.82%), Query Frame = 1


Query: 1   MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTST---TPFTKTCSRDFP 60
           M  VKL LRCP     + ADP PD+S D L  EL +LE KL  S+    PFTK+ SR F 
Sbjct: 95  MGAVKLELRCPQISDGIAADPDPDWSSDALLSELDALESKLSASSKVPVPFTKSQSRGFV 154

Query: 61  LIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGS-NAKRFNCDGCFLSDSEDSDNEST 120
             K +KRSS+PFVM ++EDE+  I ++ E + DQ S   KRF CD  +LSD ++S++ES 
Sbjct: 155 NGKGSKRSSRPFVMRIFEDEVGEIESEDEEIHDQYSAGVKRFTCDELYLSDEDESEDESA 214

Query: 121 LGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRK 153
           L  + +LME++ +VE +L +LT +H L  K   R K
Sbjct: 215 LEVQPYLMEELGIVEGALFELTLEHHLGVKEEIRNK 250

[Close]

BLAST of CmoCh04G018890 vs. TrEMBL
Match: A0A061E8P3_THECC (Nucleoporin GLE1, putative isoform 1 OS=Theobroma cacao GN=TCM_010631 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 69/150 (46.00%), Postives = 94/150 (62.67%), Query Frame = 1


Query: 1   MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTT---PFTKTCSRDFP 60
           M  VKL +RCP  V  +  DP PD+SFD L  E+ SLE+KL  S++   PFTKT SR+F 
Sbjct: 27  MGVVKLEIRCPQTVNGIGLDPDPDWSFDALLPEIDSLEKKLNVSSSVPLPFTKTKSREFY 86

Query: 61  LIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQG-SNAKRFNCDGCFLSDSEDSDNEST 120
                KRS   FVM + ++E ++   + E V D+G   A RFNCD  +LSD +DSDNES+
Sbjct: 87  AENGIKRSPNAFVMRISDEEFEDSEGEAEEVHDRGLVKATRFNCDEFYLSD-DDSDNESS 146

Query: 121 LGTRAHLMEDVDLVESSLAQLTDDHLLNTK 147
           L  + + M +V LVES+L +LT +H L  +
Sbjct: 147 LQVQTYFMNEVGLVESALVELTHEHQLGVR 175

[Close]

BLAST of CmoCh04G018890 vs. TrEMBL
Match: A0A061E7X2_THECC (Nucleoporin GLE1, putative isoform 2 OS=Theobroma cacao GN=TCM_010631 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 69/150 (46.00%), Postives = 94/150 (62.67%), Query Frame = 1


Query: 1   MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTT---PFTKTCSRDFP 60
           M  VKL +RCP  V  +  DP PD+SFD L  E+ SLE+KL  S++   PFTKT SR+F 
Sbjct: 1   MGVVKLEIRCPQTVNGIGLDPDPDWSFDALLPEIDSLEKKLNVSSSVPLPFTKTKSREFY 60

Query: 61  LIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQG-SNAKRFNCDGCFLSDSEDSDNEST 120
                KRS   FVM + ++E ++   + E V D+G   A RFNCD  +LSD +DSDNES+
Sbjct: 61  AENGIKRSPNAFVMRISDEEFEDSEGEAEEVHDRGLVKATRFNCDEFYLSD-DDSDNESS 120

Query: 121 LGTRAHLMEDVDLVESSLAQLTDDHLLNTK 147
           L  + + M +V LVES+L +LT +H L  +
Sbjct: 121 LQVQTYFMNEVGLVESALVELTHEHQLGVR 149

[Close]

BLAST of CmoCh04G018890 vs. TrEMBL
Match: A0A067K349_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17828 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.1e-23
Identity = 64/152 (42.11%), Postives = 98/152 (64.47%), Query Frame = 1


Query: 1   MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTST---TPFTKTCSRDFP 60
           M  +KL +RCP +V ++ ADP+PD+SFD L  EL SLE+KL  S+    PFTKT SR F 
Sbjct: 1   MGAIKLEIRCPHKVDEIAADPEPDWSFDALLSELNSLEKKLSGSSEVPVPFTKTHSRGFS 60

Query: 61  LIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGS---NAKRFNCDGCFLSDSEDSDNE 120
            IK+ ++SS  F+M V +DE+++  ++ E + D G      KRFNCD  ++S+S+DSD E
Sbjct: 61  SIKSVEKSSMAFIMRVSDDEMED--SEEEAMEDSGRTLVTGKRFNCDDIYISESDDSDYE 120

Query: 121 STLGTRAHLMEDVDLVESSLAQLTDDHLLNTK 147
                +++LM+ V ++E +L + + +H L  K
Sbjct: 121 LAFDEQSYLMDGVGVLEGALFERSQEHQLGVK 150

[Close]

BLAST of CmoCh04G018890 vs. TAIR10
Match: AT1G13120.1 (AT1G13120.1 embryo defective 1745)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-09
Identity = 45/149 (30.20%), Postives = 72/149 (48.32%), Query Frame = 1


Query: 10  CPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTST---TPFTKTCSRDFPLIKTTKRSS 69
           CP  V  ++ DP+P+++F+ L  E+ S+E+KL   +    P T T  R         R  
Sbjct: 9   CPKSVDGISIDPEPNWNFESLVAEIASVEKKLNGFSMYPQPITNTTLR-------MGRRG 68

Query: 70  KPFVMGVYEDELQNIFNDGEVVCDQGSN---------AKRFNCDGCFLSDSEDSDNESTL 129
             FVM V EDE+++  ++GE   D+             KRF CD  +LSD  D + +   
Sbjct: 69  GGFVMHVSEDEMES--DEGEESDDEEEEEDHSQICTAGKRFACDELYLSDESDEEFDH-- 128

Query: 130 GTRAHLMEDVDLVESSLAQLTDDHLLNTK 147
               ++M  + L ES+L ++ +DH    K
Sbjct: 129 -EPEYMMNKLGLAESALYEVINDHQTEIK 145

[Close]

BLAST of CmoCh04G018890 vs. TAIR10
Match: AT4G05523.1 (AT4G05523.1 BEST Arabidopsis thaliana protein match is: embryo defective 1745 (TAIR:AT1G13120.1))

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 37/108 (34.26%), Postives = 55/108 (50.93%), Query Frame = 1


Query: 10  CPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPF 69
           CP  V   + DP+P+ SFD L  E  S E+KL      FTK      P  KTT R+   F
Sbjct: 9   CPKSVEGFSYDPEPNRSFDRLVSETESFEKKLNA----FTKFHQ---PFTKTTSRTDIAF 68

Query: 70  VMGVYEDEL---QNIFNDGEVVCDQGSNAKRFNCDGCFLSDSEDSDNE 115
           VM V ED++   +++ N+ +        ++   CD  +LSD ++ D+E
Sbjct: 69  VMRVSEDDMDSDEDVENNDQ---QDKEESQICTCDDLYLSDDDEFDHE 106

[Close]

BLAST of CmoCh04G018890 vs. NCBI nr
Match: gi|659090657|ref|XP_008446132.1| (PREDICTED: nucleoporin GLE1 isoform X2 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 5.3e-57
Identity = 115/154 (74.68%), Postives = 129/154 (83.77%), Query Frame = 1


Query: 1   MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIK 60
           MSPVKLTLRCPS++GQV  DP PDFSFDDLR+EL+SLEEKL  ST PF KTCSRDFP+ K
Sbjct: 1   MSPVKLTLRCPSKIGQVIVDPDPDFSFDDLRLELHSLEEKLNKSTMPFKKTCSRDFPVTK 60

Query: 61  TTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNCDGCFLSDSEDSDNESTLGTR 120
           T KRSSKPF+MGVYEDEL+ IF+D EVVCD  SNA RFNCDG FLSDSEDSDNESTL  +
Sbjct: 61  TLKRSSKPFIMGVYEDELEEIFSD-EVVCDPSSNANRFNCDGIFLSDSEDSDNESTLEAQ 120

Query: 121 AHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG 155
           A+L ED+DLVESSLA+LT DH+LN K   R + G
Sbjct: 121 AYLKEDMDLVESSLAKLTHDHMLNIKEEIRNQLG 153

[Close]

BLAST of CmoCh04G018890 vs. NCBI nr
Match: gi|659090655|ref|XP_008446131.1| (PREDICTED: nucleoporin GLE1 isoform X1 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 5.3e-57
Identity = 115/154 (74.68%), Postives = 129/154 (83.77%), Query Frame = 1


Query: 1   MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIK 60
           MSPVKLTLRCPS++GQV  DP PDFSFDDLR+EL+SLEEKL  ST PF KTCSRDFP+ K
Sbjct: 39  MSPVKLTLRCPSKIGQVIVDPDPDFSFDDLRLELHSLEEKLNKSTMPFKKTCSRDFPVTK 98

Query: 61  TTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNCDGCFLSDSEDSDNESTLGTR 120
           T KRSSKPF+MGVYEDEL+ IF+D EVVCD  SNA RFNCDG FLSDSEDSDNESTL  +
Sbjct: 99  TLKRSSKPFIMGVYEDELEEIFSD-EVVCDPSSNANRFNCDGIFLSDSEDSDNESTLEAQ 158

Query: 121 AHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG 155
           A+L ED+DLVESSLA+LT DH+LN K   R + G
Sbjct: 159 AYLKEDMDLVESSLAKLTHDHMLNIKEEIRNQLG 191

[Close]

BLAST of CmoCh04G018890 vs. NCBI nr
Match: gi|449435436|ref|XP_004135501.1| (PREDICTED: protein GLE1 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 6.5e-55
Identity = 113/154 (73.38%), Postives = 127/154 (82.47%), Query Frame = 1


Query: 1   MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIK 60
           MSPVKLTLRCPS++GQVT DP PDFSFDDLRVEL+SLEEKL  ST PF KTCSRDFP+ K
Sbjct: 1   MSPVKLTLRCPSKIGQVTVDPDPDFSFDDLRVELHSLEEKLNKSTMPFKKTCSRDFPVTK 60

Query: 61  TTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNCDGCFLSDSEDSDNESTLGTR 120
           T KRS KPF+MGVYEDEL+ IFND EVV +  SNA RFNCDG FLSDSEDSDN+ST   +
Sbjct: 61  TLKRSFKPFIMGVYEDELKEIFND-EVVREPSSNANRFNCDGIFLSDSEDSDNDSTPEAQ 120

Query: 121 AHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG 155
           A+L ED+DLVESSLA+LT DH+LN K   R + G
Sbjct: 121 AYLKEDMDLVESSLAELTHDHMLNIKEEIRNQLG 153

[Close]

BLAST of CmoCh04G018890 vs. NCBI nr
Match: gi|703113287|ref|XP_010100347.1| (Nucleoporin GLE1 [Morus notabilis])

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-24
Identity = 72/156 (46.15%), Postives = 98/156 (62.82%), Query Frame = 1


Query: 1   MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTST---TPFTKTCSRDFP 60
           M  VKL LRCP     + ADP PD+S D L  EL +LE KL  S+    PFTK+ SR F 
Sbjct: 95  MGAVKLELRCPQISDGIAADPDPDWSSDALLSELDALESKLSASSKVPVPFTKSQSRGFV 154

Query: 61  LIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGS-NAKRFNCDGCFLSDSEDSDNEST 120
             K +KRSS+PFVM ++EDE+  I ++ E + DQ S   KRF CD  +LSD ++S++ES 
Sbjct: 155 NGKGSKRSSRPFVMRIFEDEVGEIESEDEEIHDQYSAGVKRFTCDELYLSDEDESEDESA 214

Query: 121 LGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRK 153
           L  + +LME++ +VE +L +LT +H L  K   R K
Sbjct: 215 LEVQPYLMEELGIVEGALFELTLEHHLGVKEEIRNK 250

[Close]

BLAST of CmoCh04G018890 vs. NCBI nr
Match: gi|590695370|ref|XP_007044871.1| (Nucleoporin GLE1, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 69/150 (46.00%), Postives = 94/150 (62.67%), Query Frame = 1


Query: 1   MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTT---PFTKTCSRDFP 60
           M  VKL +RCP  V  +  DP PD+SFD L  E+ SLE+KL  S++   PFTKT SR+F 
Sbjct: 1   MGVVKLEIRCPQTVNGIGLDPDPDWSFDALLPEIDSLEKKLNVSSSVPLPFTKTKSREFY 60

Query: 61  LIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQG-SNAKRFNCDGCFLSDSEDSDNEST 120
                KRS   FVM + ++E ++   + E V D+G   A RFNCD  +LSD +DSDNES+
Sbjct: 61  AENGIKRSPNAFVMRISDEEFEDSEGEAEEVHDRGLVKATRFNCDEFYLSD-DDSDNESS 120

Query: 121 LGTRAHLMEDVDLVESSLAQLTDDHLLNTK 147
           L  + + M +V LVES+L +LT +H L  +
Sbjct: 121 LQVQTYFMNEVGLVESALVELTHEHQLGVR 149

The following BLAST results are available for this feature:

BLAST of CmoCh04G018890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GLE1_ARATH	1.0e-07	30.20	Protein GLE1 OS=Arabidopsis thaliana GN=GLE1 PE=1 SV=1	[more]

BLAST of CmoCh04G018890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS46_CUCSA	4.6e-55	73.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G593410 PE=4 SV=1	[more]
W9RMY7_9ROSA	1.4e-24	46.15	Nucleoporin GLE1 OS=Morus notabilis GN=L484_027656 PE=4 SV=1	[more]
A0A061E8P3_THECC	1.2e-23	46.00	Nucleoporin GLE1, putative isoform 1 OS=Theobroma cacao GN=TCM_010631 PE=4 SV=1	[more]
A0A061E7X2_THECC	1.2e-23	46.00	Nucleoporin GLE1, putative isoform 2 OS=Theobroma cacao GN=TCM_010631 PE=4 SV=1	[more]
A0A067K349_JATCU	2.1e-23	42.11	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17828 PE=4 SV=1	[more]

BLAST of CmoCh04G018890 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G13120.1	5.8e-09	30.20	embryo defective 1745	[more]
AT4G05523.1	1.2e-06	34.26	BEST Arabidopsis thaliana protein match is: embryo defective 1745 (T...	[more]

BLAST of CmoCh04G018890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090657\|ref\|XP_008446132.1\|	5.3e-57	74.68	PREDICTED: nucleoporin GLE1 isoform X2 [Cucumis melo]	[more]
gi\|659090655\|ref\|XP_008446131.1\|	5.3e-57	74.68	PREDICTED: nucleoporin GLE1 isoform X1 [Cucumis melo]	[more]
gi\|449435436\|ref\|XP_004135501.1\|	6.5e-55	73.38	PREDICTED: protein GLE1 [Cucumis sativus]	[more]
gi\|703113287\|ref\|XP_010100347.1\|	2.1e-24	46.15	Nucleoporin GLE1 [Morus notabilis]	[more]
gi\|590695370\|ref\|XP_007044871.1\|	1.7e-23	46.00	Nucleoporin GLE1, putative isoform 2 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016973	poly(A)+ mRNA export from nucleus
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G018890.1	CmoCh04G018890.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G018890	Cucumber (Gy14) v2	cgybcmoB232
CmoCh04G018890	Cucumber (Gy14) v2	cgybcmoB653
CmoCh04G018890	Melon (DHL92) v3.6.1	cmomedB721
CmoCh04G018890	Melon (DHL92) v3.6.1	cmomedB761
CmoCh04G018890	Silver-seed gourd	carcmoB0343
CmoCh04G018890	Silver-seed gourd	carcmoB0685
CmoCh04G018890	Silver-seed gourd	carcmoB0858
CmoCh04G018890	Cucumber (Chinese Long) v3	cmocucB0808
CmoCh04G018890	Cucumber (Chinese Long) v3	cmocucB0875
CmoCh04G018890	Watermelon (97103) v2	cmowmbB730
CmoCh04G018890	Watermelon (97103) v2	cmowmbB763
CmoCh04G018890	Wax gourd	cmowgoB0890
CmoCh04G018890	Cucurbita moschata (Rifu)	cmocmoB147
CmoCh04G018890	Cucurbita moschata (Rifu)	cmocmoB341
CmoCh04G018890	Cucurbita moschata (Rifu)	cmocmoB472
CmoCh04G018890	Cucumber (Gy14) v1	cgycmoB0794
CmoCh04G018890	Cucumber (Gy14) v1	cgycmoB1092
CmoCh04G018890	Cucurbita maxima (Rimu)	cmacmoB189
CmoCh04G018890	Cucurbita maxima (Rimu)	cmacmoB422
CmoCh04G018890	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G018890	Cucurbita maxima (Rimu)	cmacmoB785
CmoCh04G018890	Wild cucumber (PI 183967)	cmocpiB693
CmoCh04G018890	Wild cucumber (PI 183967)	cmocpiB748
CmoCh04G018890	Cucumber (Chinese Long) v2	cmocuB682
CmoCh04G018890	Cucumber (Chinese Long) v2	cmocuB739
CmoCh04G018890	Melon (DHL92) v3.5.1	cmomeB632
CmoCh04G018890	Melon (DHL92) v3.5.1	cmomeB673
CmoCh04G018890	Watermelon (Charleston Gray)	cmowcgB655
CmoCh04G018890	Watermelon (Charleston Gray)	cmowcgB683
CmoCh04G018890	Watermelon (97103) v1	cmowmB666
CmoCh04G018890	Watermelon (97103) v1	cmowmB694
CmoCh04G018890	Cucurbita pepo (Zucchini)	cmocpeB646
CmoCh04G018890	Cucurbita pepo (Zucchini)	cmocpeB656
CmoCh04G018890	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G018890	Cucurbita pepo (Zucchini)	cmocpeB710
CmoCh04G018890	Bottle gourd (USVL1VR-Ls)	cmolsiB661
CmoCh04G018890	Bottle gourd (USVL1VR-Ls)	cmolsiB698