CmoCh04G018730 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G018730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionLOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage;
LocationCmo_Chr04 : 9430902 .. 9431323 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATATCTGCTAAATGCGAATGTGAATTTGCTACCATACTTCACAAATGCAAACAAGAAAGTGAGTGTGGATTTGAGCTCCATGATCCTCTATCTTTGCATTGGTAACACACTTATTGCGACCCAATTCATAGCTCCCTTTTCAACATCCAAACAAGAACCAATGTTGATGAATGTTCAAATGATGTCTAATCAGGTCAGTCTCTCCATTATAGAAAGAAAAATGGTTCAAAAGCAAGTGGAAACGAATGGGTTGAAGGTTGAGGTAAAGGGATTTTCTGGGTCAAATTTAATTTTGGTACTTTGTTACGATACTCGAATTTTCTACACAATTATTGCAGTTTGATTGTTGGTGGCCCTCTTGGTGGGTTTCGGATTAAAAAAATAAGGCACGCTAACAACATGCTTCATTTCTATTGA

mRNA sequence

ATGGGATATCTGCTAAATGCGAATGTGAATTTGCTACCATACTTCACAAATGCAAACAAGAAAGTGAGTGTGGATTTGAGCTCCATGATCCTCTATCTTTGCATTGGTAACACACTTATTGCGACCCAATTCATAGCTCCCTTTTCAACATCCAAACAAGAACCAATGTTGATGAATGTTCAAATGATGTCTAATCAGGTCAGTCTCTCCATTATAGAAAGAAAAATGGTTCAAAAGCAAGTGGAAACGAATGGGTTGAAGGTTGAGGTAAAGGGATTTTCTGGTTTGATTGTTGGTGGCCCTCTTGGTGGGTTTCGGATTAAAAAAATAAGGCACGCTAACAACATGCTTCATTTCTATTGA

Coding sequence (CDS)

ATGGGATATCTGCTAAATGCGAATGTGAATTTGCTACCATACTTCACAAATGCAAACAAGAAAGTGAGTGTGGATTTGAGCTCCATGATCCTCTATCTTTGCATTGGTAACACACTTATTGCGACCCAATTCATAGCTCCCTTTTCAACATCCAAACAAGAACCAATGTTGATGAATGTTCAAATGATGTCTAATCAGGTCAGTCTCTCCATTATAGAAAGAAAAATGGTTCAAAAGCAAGTGGAAACGAATGGGTTGAAGGTTGAGGTAAAGGGATTTTCTGGTTTGATTGTTGGTGGCCCTCTTGGTGGGTTTCGGATTAAAAAAATAAGGCACGCTAACAACATGCTTCATTTCTATTGA
Homology
[Close]
BLAST of CmoCh04G018730 vs. TrEMBL
Match: A0A0A0KQ40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G597480 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.3e-26
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = 1 

Query: 1   MGYLLNANVNLLPYFTNANKKVSVDLSSMILYLCIGNTLIATQFIAPFSTSKQEPMLMNV 60
           MGYLLNA+VNLL  FTN NKKVSVD SSMILYL  GNTLIATQFIAPFS  K+E ML+N+
Sbjct: 219 MGYLLNADVNLLANFTNPNKKVSVDFSSMILYLYYGNTLIATQFIAPFSAYKEESMLINI 278

Query: 61  QMMSNQVSLSIIERKMVQKQVETNGLKVEVKG--------------------FSGLIVGG 109
            M+S+QV L I+ER+ +QKQ+E +G+K+E+KG                    +  L VGG
Sbjct: 279 HMVSSQVRLPILERQRLQKQLEISGIKLELKGIFRARSNFGTLLRYSYWMHSYCHLFVGG 338

[Close]
BLAST of CmoCh04G018730 vs. TrEMBL
Match: M5XVT3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027169mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-18
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1 

Query: 1   MGYLLNANVNLLPYFTNANKKVSVDLSSMILYLCIGNTLIATQFIAPFSTSKQEPMLMNV 60
           MGYLLNA++ +L  FTN NKKVSVD SS+I+ L  GNTLIATQ+I PFS  K+E M  NV
Sbjct: 226 MGYLLNADLTVLANFTNPNKKVSVDFSSLIIDLYYGNTLIATQYIEPFSAHKRESMFANV 285

Query: 61  QMMSNQVSLSIIERKMVQKQVETNGLKVEVKG 93
            M+ +QV L ++E + +QKQ+ETN    EVKG
Sbjct: 286 HMVVSQVRLGLLESQRLQKQMETNRAVFEVKG 317

[Close]
BLAST of CmoCh04G018730 vs. TrEMBL
Match: A0A151TKU3_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_023960 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-16
Identity = 46/92 (50.00%), Postives = 69/92 (75.00%), Query Frame = 1 

Query: 1   MGYLLNANVNLLPYFTNANKKVSVDLSSMILYLCIGNTLIATQFIAPFSTSKQEPMLMNV 60
           +GYLLNA++ +L  FTN NKKV VD SS+I+YL  G+TLIATQ++ PFS ++ +    N+
Sbjct: 21  LGYLLNADLTMLANFTNPNKKVHVDFSSVIIYLYYGSTLIATQYVEPFSAARLQSRFANI 80

Query: 61  QMMSNQVSLSIIERKMVQKQVETNGLKVEVKG 93
            M+S+QV L + E + + KQ+E+NG+ +EV+G
Sbjct: 81  HMVSSQVQLPLRESQRLVKQMESNGVLLEVRG 112

[Close]
BLAST of CmoCh04G018730 vs. TrEMBL
Match: A0A0L9TJH0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g032300 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 1   MGYLLNANVNLLPYFTNANKKVSVDLSSMILYLCIGNTLIATQFIAPFSTSKQEPMLMNV 60
           +GYLLNA++ +L  FTN NKKV VD SS+I+YL  G+TLIATQ++ PFS ++ +     +
Sbjct: 202 LGYLLNADLTMLANFTNPNKKVHVDFSSVIIYLYYGSTLIATQYVEPFSAARLQSRFATI 261

Query: 61  QMMSNQVSLSIIERKMVQKQVETNGLKVEVKG 93
            M+S+QV L + E + + KQ+E NG+ +EV+G
Sbjct: 262 HMVSSQVQLPLRESQRLVKQMEGNGVILEVRG 293

[Close]
BLAST of CmoCh04G018730 vs. TrEMBL
Match: A0A0S3QYT3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G092700 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 1   MGYLLNANVNLLPYFTNANKKVSVDLSSMILYLCIGNTLIATQFIAPFSTSKQEPMLMNV 60
           +GYLLNA++ +L  FTN NKKV VD SS+I+YL  G+TLIATQ++ PFS ++ +     +
Sbjct: 13  LGYLLNADLTMLANFTNPNKKVHVDFSSVIIYLYYGSTLIATQYVEPFSAARLQSRFATI 72

Query: 61  QMMSNQVSLSIIERKMVQKQVETNGLKVEVKG 93
            M+S+QV L + E + + KQ+E NG+ +EV+G
Sbjct: 73  HMVSSQVQLPLRESQRLVKQMEGNGVILEVRG 104

[Close]
BLAST of CmoCh04G018730 vs. TAIR10
Match: AT3G26350.1 (AT3G26350.1 LOCATED IN: chloroplast)

HSP 1 Score: 71.6 bits (174), Expect = 3.6e-13
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 1 

Query: 1   MGYLLNANVNLLPYFTNANKKVSVDLSSMILYLCIGNTLIATQFIAPFSTSKQEPMLMNV 60
           MG+LLN ++ +L   TN +KK SV+ S +   L   NTLIATQ+I PF   K+  M  NV
Sbjct: 222 MGFLLNGDLTILANVTNPSKKSSVEFSYVTFELYYYNTLIATQYIEPFKVPKKTSMFANV 281

Query: 61  QMMSNQVSLSIIERKMVQKQVETNGLKVEVKG-FSGLIVGGPLGGFRIKKIRHANNMLH 119
            ++S+QV L   + + +Q+Q+ET  + + ++G F      GPL  +  K   H +  L+
Sbjct: 282 HLVSSQVQLQATQSRELQRQIETGPVLLNLRGMFHARSHIGPLFRYSYKLHTHCSVSLN 340

[Close]
BLAST of CmoCh04G018730 vs. TAIR10
Match: AT1G13050.1 (AT1G13050.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 34/92 (36.96%), Postives = 57/92 (61.96%), Query Frame = 1 

Query: 1   MGYLLNANVNLLPYFTNANKKVSVDLSSMILYLCIGNTLIATQFIAPFSTSKQEPMLMNV 60
           MGY+LN ++ ++  FTN +KK SVD S ++  L   NTLIAT+ I PF   K   M  + 
Sbjct: 183 MGYVLNGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSF 242

Query: 61  QMMSNQVSLSIIERKMVQKQVETNGLKVEVKG 93
            ++S+QV + +I+ + +Q Q+ T  + + ++G
Sbjct: 243 HLVSSQVQIQMIQSQDLQLQLGTGPVLLNLRG 274

[Close]
BLAST of CmoCh04G018730 vs. NCBI nr
Match: gi|659090665|ref|XP_008446136.1| (PREDICTED: uncharacterized protein LOC103488950 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 7.1e-27
Identity = 74/128 (57.81%), Postives = 88/128 (68.75%), Query Frame = 1 

Query: 1   MGYLLNANVNLLPYFTNANKKVSVDLSSMILYLCIGNTLIATQFIAPFSTSKQEPMLMNV 60
           MGYLLNA+VNLL  FTN NKKVSVD SSMILYL  GNTLIATQFIAPFS  K+E ML+N+
Sbjct: 231 MGYLLNADVNLLANFTNPNKKVSVDFSSMILYLYYGNTLIATQFIAPFSAYKEESMLINI 290

Query: 61  QMMSNQVSLSIIERKMVQKQVETNGLKVEVKG--------------------FSGLIVGG 109
            M+S+QV L I+ER+ +QKQ+ETNG+K+E+KG                    +  L VGG
Sbjct: 291 HMVSSQVRLPILERQRLQKQLETNGIKLELKGLFRARSNFGTMLRYSYWMHTYCQLFVGG 350

[Close]
BLAST of CmoCh04G018730 vs. NCBI nr
Match: gi|449435420|ref|XP_004135493.1| (PREDICTED: uncharacterized protein LOC101215018 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = 1 

Query: 1   MGYLLNANVNLLPYFTNANKKVSVDLSSMILYLCIGNTLIATQFIAPFSTSKQEPMLMNV 60
           MGYLLNA+VNLL  FTN NKKVSVD SSMILYL  GNTLIATQFIAPFS  K+E ML+N+
Sbjct: 219 MGYLLNADVNLLANFTNPNKKVSVDFSSMILYLYYGNTLIATQFIAPFSAYKEESMLINI 278

Query: 61  QMMSNQVSLSIIERKMVQKQVETNGLKVEVKG--------------------FSGLIVGG 109
            M+S+QV L I+ER+ +QKQ+E +G+K+E+KG                    +  L VGG
Sbjct: 279 HMVSSQVRLPILERQRLQKQLEISGIKLELKGIFRARSNFGTLLRYSYWMHSYCHLFVGG 338

[Close]
BLAST of CmoCh04G018730 vs. NCBI nr
Match: gi|645230431|ref|XP_008221932.1| (PREDICTED: uncharacterized protein LOC103321862 [Prunus mume])

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1 

Query: 1   MGYLLNANVNLLPYFTNANKKVSVDLSSMILYLCIGNTLIATQFIAPFSTSKQEPMLMNV 60
           MGYLLNA++ +L  FTN NKKVSVD SS+I+ L  GNTLIATQ+I PFS  K+E M  NV
Sbjct: 231 MGYLLNADLTVLANFTNPNKKVSVDFSSLIIDLYYGNTLIATQYIEPFSAHKRESMFANV 290

Query: 61  QMMSNQVSLSIIERKMVQKQVETNGLKVEVKG 93
            M+ +QV L ++E + +QKQ+ETN    EVKG
Sbjct: 291 HMVVSQVRLGLLESQRLQKQMETNRAVFEVKG 322

[Close]
BLAST of CmoCh04G018730 vs. NCBI nr
Match: gi|596246835|ref|XP_007224594.1| (hypothetical protein PRUPE_ppa027169mg [Prunus persica])

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1 

Query: 1   MGYLLNANVNLLPYFTNANKKVSVDLSSMILYLCIGNTLIATQFIAPFSTSKQEPMLMNV 60
           MGYLLNA++ +L  FTN NKKVSVD SS+I+ L  GNTLIATQ+I PFS  K+E M  NV
Sbjct: 226 MGYLLNADLTVLANFTNPNKKVSVDFSSLIIDLYYGNTLIATQYIEPFSAHKRESMFANV 285

Query: 61  QMMSNQVSLSIIERKMVQKQVETNGLKVEVKG 93
            M+ +QV L ++E + +QKQ+ETN    EVKG
Sbjct: 286 HMVVSQVRLGLLESQRLQKQMETNRAVFEVKG 317

[Close]
BLAST of CmoCh04G018730 vs. NCBI nr
Match: gi|658009795|ref|XP_008340121.1| (PREDICTED: uncharacterized protein LOC103403078 [Malus domestica])

HSP 1 Score: 98.6 bits (244), Expect = 7.9e-18
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 1   MGYLLNANVNLLPYFTNANKKVSVDLSSMILYLCIGNTLIATQFIAPFSTSKQEPMLMNV 60
           MGYLLNA+V +L  FTN NKKVSVD S +I+ L  GNTLIATQ++ PFS  +   M  NV
Sbjct: 266 MGYLLNADVTVLANFTNPNKKVSVDFSYLIIDLYYGNTLIATQYVEPFSAERSRSMFANV 325

Query: 61  QMMSNQVSLSIIERKMVQKQVETNGLKVEVKGF 94
            M+++QV L ++ER+ ++KQ+E N  + EVKG+
Sbjct: 326 HMVASQVRLGVLERQRLKKQMENNRAEFEVKGY 358

The following BLAST results are available for this feature:
BLAST of CmoCh04G018730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G018730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ40_CUCSA9.3e-2656.25Uncharacterized protein OS=Cucumis sativus GN=Csa_5G597480 PE=4 SV=1[more]
M5XVT3_PRUPE1.9e-1858.70Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027169mg PE=4 SV=1[more]
A0A151TKU3_CAJCA3.0e-1650.00Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_023960 PE=4 SV=1[more]
A0A0L9TJH0_PHAAN4.4e-1548.91Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g032300 PE=4 SV=1[more]
A0A0S3QYT3_PHAAN4.4e-1548.91Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G092700 PE=... [more]
BLAST of CmoCh04G018730 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G26350.13.6e-1336.97 LOCATED IN: chloroplast[more]
AT1G13050.11.4e-0936.96 unknown protein[more]
BLAST of CmoCh04G018730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090665|ref|XP_008446136.1|7.1e-2757.81PREDICTED: uncharacterized protein LOC103488950 [Cucumis melo][more]
gi|449435420|ref|XP_004135493.1|1.3e-2556.25PREDICTED: uncharacterized protein LOC101215018 [Cucumis sativus][more]
gi|645230431|ref|XP_008221932.1|2.7e-1858.70PREDICTED: uncharacterized protein LOC103321862 [Prunus mume][more]
gi|596246835|ref|XP_007224594.1|2.7e-1858.70hypothetical protein PRUPE_ppa027169mg [Prunus persica][more]
gi|658009795|ref|XP_008340121.1|7.9e-1853.76PREDICTED: uncharacterized protein LOC103403078 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G018730.1CmoCh04G018730.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31852FAMILY NOT NAMEDcoord: 4..92
score: 1.0
NoneNo IPR availablePANTHERPTHR31852:SF49F3F19.7-RELATEDcoord: 4..92
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G018730Cucsa.286640Cucumber (Gy14) v1cgycmoB0794
CmoCh04G018730Cla010028Watermelon (97103) v1cmowmB694
CmoCh04G018730Csa5G597480Cucumber (Chinese Long) v2cmocuB739
CmoCh04G018730CSPI05G22100Wild cucumber (PI 183967)cmocpiB748
CmoCh04G018730Lsi04G006110Bottle gourd (USVL1VR-Ls)cmolsiB661
CmoCh04G018730Cp4.1LG09g06330Cucurbita pepo (Zucchini)cmocpeB646
CmoCh04G018730MELO3C011935.2Melon (DHL92) v3.6.1cmomedB721
CmoCh04G018730CsaV3_5G030940Cucumber (Chinese Long) v3cmocucB0875
CmoCh04G018730Cla97C05G108150Watermelon (97103) v2cmowmbB730
CmoCh04G018730Bhi07G001453Wax gourdcmowgoB0890
CmoCh04G018730CsGy5G021590Cucumber (Gy14) v2cgybcmoB653
CmoCh04G018730Carg14514Silver-seed gourdcarcmoB0985
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G018730Melon (DHL92) v3.5.1cmomeB632
CmoCh04G018730Melon (DHL92) v3.5.1cmomeB673
CmoCh04G018730Watermelon (Charleston Gray)cmowcgB655
CmoCh04G018730Watermelon (Charleston Gray)cmowcgB683
CmoCh04G018730Watermelon (97103) v1cmowmB666
CmoCh04G018730Cucurbita pepo (Zucchini)cmocpeB656
CmoCh04G018730Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G018730Cucurbita pepo (Zucchini)cmocpeB710
CmoCh04G018730Bottle gourd (USVL1VR-Ls)cmolsiB698
CmoCh04G018730Cucumber (Gy14) v2cgybcmoB232
CmoCh04G018730Melon (DHL92) v3.6.1cmomedB761
CmoCh04G018730Silver-seed gourdcarcmoB0343
CmoCh04G018730Silver-seed gourdcarcmoB0685
CmoCh04G018730Silver-seed gourdcarcmoB0858
CmoCh04G018730Cucumber (Chinese Long) v3cmocucB0808
CmoCh04G018730Watermelon (97103) v2cmowmbB763
CmoCh04G018730Cucurbita moschata (Rifu)cmocmoB147
CmoCh04G018730Cucurbita moschata (Rifu)cmocmoB341
CmoCh04G018730Cucurbita moschata (Rifu)cmocmoB472
CmoCh04G018730Cucumber (Gy14) v1cgycmoB1092
CmoCh04G018730Cucurbita maxima (Rimu)cmacmoB189
CmoCh04G018730Cucurbita maxima (Rimu)cmacmoB422
CmoCh04G018730Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G018730Cucurbita maxima (Rimu)cmacmoB785
CmoCh04G018730Wild cucumber (PI 183967)cmocpiB693
CmoCh04G018730Cucumber (Chinese Long) v2cmocuB682