CmoCh04G018540 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G018540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cyclin-related, putative isoform 3
Location	Cmo_Chr04 : 9314395 .. 9315520 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATCATCACTGCCCTGTTTTCGAGTTTATCATTTACTGCAGGAGTTGAAAGGAATCCTGTAAATTATTACTCCGTTTCTTTTCTTGCGGATTGCCCAATCCATGCTCTTCTCCTTCACATGGATTGAGGCTATCTTTTATGGTGTATGCTAACAAATAGTTTCTTGTTAAGTATTACACTGCACGGAGGGCTGAGCAGCTCTCTTCTAAGCTTTTTGCATGTTTAACTCACCAAATCAGTATAATGGATGCTTTCATTTCTAGACAAGTATCGCGGTCACCACATAGCAAGCACTCTCAGCGCAAGCATTCTCCCCTCTCTTCTCTTGAAACCACCAGGTATGCCGCAATATCTCATACATTAAGATTGTGCATGTGATCTAAGGACATATGCACACTCATCCTCATAACAGTAAGCTGCTCCAATGGATGCTTCAGACTTGTTGTTATCAATTGTTCTTTAGGCCTAACTATACATATCGTACAGGGCAAGGAGGTCAAGATCTCGGTCCCCTGCTAGACGGCGCAGATGACTGTCAAATGATTAAGAATTCCTAACTAATTGTATTGGTTTGAAGACTCGGAATCTTAATTTCAACACCTGAATCTGGACTCCTCGGAAAAGATTCATAAGCTGCAGATTGTATCGGAATTCGAAGAGATGGGCAATGCACAGAAGTCTGTTTCAATGGCTTTACTAGGTGGTTGTGATACTCTTAAGGGTCATGAACATATGAATTGATGCAGTCCGTTTGAACTGGCGATACTACATTCTGGTCTAATATGAGCTGTTGCTTTAAATGTAGAAGATTATTGGTTACTGTTTCCATCGGTGTATGATGATCGTGGACTTGAAGGGAAAACCTCAGAAGGTGTTTTGATTTTCTAATGGTTGGTTACCCAAATCAGGAATAGGGTGCAAAAAGTGTATGTATGATGGGAAAAGAAATTTAACTCAAGGTTTGAACTTTTGGTGTTGTATGTATTCGAGTTATTAAATCTTTCTGTAGCCCTTCCGTCTGCCTATGTTTTTTACATCTTCTGAGTTGCCTTAGCTACTAAAAAGGCGGCTCGAAACTAGGTTCGTAGCCAAATCCGAACTATTGGGGAGCAATTTTGAAG

mRNA sequence

ATGGGCATCATCACTGCCCTGTTTTCGAGTTTATCATTTACTGCAGGAGTTGAAAGGAATCCTTTTCTTGTTAAGTATTACACTGCACGGAGGGCTGAGCAGCTCTCTTCTAAGCTTTTTGCATGTTTAACTCACCAAATCAGTATAATGGATGCTTTCATTTCTAGACAAGTATCGCGGTCACCACATAGCAAGCACTCTCAGCGCAAGCATTCTCCCCTCTCTTCTCTTGAAACCACCAGGGCAAGGAGGTCAAGATCTCGGTCCCCTGCTAGACGGCGCAGATGACTGTCAAATGATTAAGAATTCCTAACTAATTGTATTGGTTTGAAGACTCGGAATCTTAATTTCAACACCTGAATCTGGACTCCTCGGAAAAGATTCATAAGCTGCAGATTGTATCGGAATTCGAAGAGATGGGCAATGCACAGAAGTCTGTTTCAATGGCTTTACTAGGTGGTTGTGATACTCTTAAGGGTCATGAACATATGAATTGATGCAGTCCGTTTGAACTGGCGATACTACATTCTGGTCTAATATGAGCTGTTGCTTTAAATGTAGAAGATTATTGGTTACTGTTTCCATCGGTGTATGATGATCGTGGACTTGAAGGGAAAACCTCAGAAGGTGTTTTGATTTTCTAATGGTTGGTTACCCAAATCAGGAATAGGGTGCAAAAAGTGTATGTATGATGGGAAAAGAAATTTAACTCAAGGTTTGAACTTTTGGTGTTGTATGTATTCGAGTTATTAAATCTTTCTGTAGCCCTTCCGTCTGCCTATGTTTTTTACATCTTCTGAGTTGCCTTAGCTACTAAAAAGGCGGCTCGAAACTAGGTTCGTAGCCAAATCCGAACTATTGGGGAGCAATTTTGAAG

Coding sequence (CDS)

ATGGGCATCATCACTGCCCTGTTTTCGAGTTTATCATTTACTGCAGGAGTTGAAAGGAATCCTTTTCTTGTTAAGTATTACACTGCACGGAGGGCTGAGCAGCTCTCTTCTAAGCTTTTTGCATGTTTAACTCACCAAATCAGTATAATGGATGCTTTCATTTCTAGACAAGTATCGCGGTCACCACATAGCAAGCACTCTCAGCGCAAGCATTCTCCCCTCTCTTCTCTTGAAACCACCAGGGCAAGGAGGTCAAGATCTCGGTCCCCTGCTAGACGGCGCAGATGA

Homology

[Close]

BLAST of CmoCh04G018540 vs. TrEMBL
Match: A0A0A0KS75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598670 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.0e-08
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1


Query: 56   RQVSRSPHSKHSQRKHSPLSSLETTRARRSRSRSPARRRR 96
            RQVSRSPHSKHSQR+HSP SSL+ TRARRSRSRSPARRRR
Sbjct: 966  RQVSRSPHSKHSQRRHSPFSSLDITRARRSRSRSPARRRR 1005

[Close]

BLAST of CmoCh04G018540 vs. TrEMBL
Match: F6GZ16_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0291g00090 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1


Query: 56  RQVSRSPHSKHSQRKHSPLSSLETTRARRSRSRSPARRRR 96
           RQVSRSPHSKHSQR+HSP SS ETTR RRSRS+SP RR+R
Sbjct: 860 RQVSRSPHSKHSQRRHSPYSSFETTRGRRSRSKSPVRRQR 899

[Close]

BLAST of CmoCh04G018540 vs. TrEMBL
Match: B9SPK9_RICCO (Hydrolase, acting on ester bonds, putative OS=Ricinus communis GN=RCOM_0024860 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1


Query: 56  RQVSRSPHSKHSQRKHSPLSSLETTRARRSRSRSPARRRR 96
           RQVSRSPHSKHSQR+HSP SSLETTR +RSRS+SP RR R
Sbjct: 921 RQVSRSPHSKHSQRRHSPYSSLETTRRKRSRSKSPVRRHR 960

[Close]

BLAST of CmoCh04G018540 vs. TrEMBL
Match: B9HLR1_POPTR (Cyclin-related family protein OS=Populus trichocarpa GN=POPTR_0008s19100g PE=4 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-06
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1


Query: 56  RQVSRSPHSKHSQRKHSPLSSLETTRARRSRSRSPARRRR 96
           RQVSRSPHSKHSQR+HSP SSLETTR RRSRS+SP RR +
Sbjct: 955 RQVSRSPHSKHSQRRHSPYSSLETTRRRRSRSQSPVRRHK 994

[Close]

BLAST of CmoCh04G018540 vs. TrEMBL
Match: A0A0B0PCH0_GOSAR (Choline dehydrogenase OS=Gossypium arboreum GN=F383_04493 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.8e-06
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 56   RQVSRSPHSKHSQRKHSPLSSLETTRARRSRSRSPARR 94
            RQVSRSPHSKHSQR+HSP SS ETTR R+SRSRSP RR
Sbjct: 997  RQVSRSPHSKHSQRRHSPYSSSETTRGRKSRSRSPVRR 1034

[Close]

BLAST of CmoCh04G018540 vs. NCBI nr
Match: gi|719979299|ref|XP_010249426.1| (PREDICTED: uncharacterized protein LOC104591967 [Nelumbo nucifera])

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-08
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1


Query: 23   LVKYYTARRAEQLSSKLFACLTHQISIMDAFISRQVSRSPHSKHSQRKHSPLSSLETT 81
            L +  T    E L  KL   LTH++S+MD FISRQVSRSPHSKHSQR+HSP SSLET+
Sbjct: 1025 LYQVLTLYEDEILCIKL-CILTHRVSMMDVFISRQVSRSPHSKHSQRRHSPYSSLETS 1081

[Close]

BLAST of CmoCh04G018540 vs. NCBI nr
Match: gi|778704935|ref|XP_011655607.1| (PREDICTED: uncharacterized protein LOC101214056 isoform X2 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1


Query: 56  RQVSRSPHSKHSQRKHSPLSSLETTRARRSRSRSPARRRR 96
           RQVSRSPHSKHSQR+HSP SSL+ TRARRSRSRSPARRRR
Sbjct: 799 RQVSRSPHSKHSQRRHSPFSSLDITRARRSRSRSPARRRR 838

[Close]

BLAST of CmoCh04G018540 vs. NCBI nr
Match: gi|700196582|gb|KGN51759.1| (hypothetical protein Csa_5G598670 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1


Query: 56   RQVSRSPHSKHSQRKHSPLSSLETTRARRSRSRSPARRRR 96
            RQVSRSPHSKHSQR+HSP SSL+ TRARRSRSRSPARRRR
Sbjct: 966  RQVSRSPHSKHSQRRHSPFSSLDITRARRSRSRSPARRRR 1005

[Close]

BLAST of CmoCh04G018540 vs. NCBI nr
Match: gi|778704933|ref|XP_011655606.1| (PREDICTED: uncharacterized protein LOC101214056 isoform X1 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1


Query: 56   RQVSRSPHSKHSQRKHSPLSSLETTRARRSRSRSPARRRR 96
            RQVSRSPHSKHSQR+HSP SSL+ TRARRSRSRSPARRRR
Sbjct: 965  RQVSRSPHSKHSQRRHSPFSSLDITRARRSRSRSPARRRR 1004

[Close]

BLAST of CmoCh04G018540 vs. NCBI nr
Match: gi|719984419|ref|XP_010251070.1| (PREDICTED: uncharacterized protein LOC104593088 isoform X3 [Nelumbo nucifera])

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-07
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1


Query: 56   RQVSRSPHSKHSQRKHSPLSSLETTRARRSRSRSPARRRR 96
            RQVSRSPHSKHSQR+HSP SSLETTR++RSRS SP RRRR
Sbjct: 1023 RQVSRSPHSKHSQRRHSPYSSLETTRSKRSRSNSPVRRRR 1062

The following BLAST results are available for this feature:

BLAST of CmoCh04G018540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G018540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS75_CUCSA	7.0e-08	90.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598670 PE=4 SV=1	[more]
F6GZ16_VITVI	1.3e-06	82.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0291g00090 PE=4 SV=...	[more]
B9SPK9_RICCO	1.7e-06	82.50	Hydrolase, acting on ester bonds, putative OS=Ricinus communis GN=RCOM_0024860 P...	[more]
B9HLR1_POPTR	2.2e-06	82.50	Cyclin-related family protein OS=Populus trichocarpa GN=POPTR_0008s19100g PE=4 S...	[more]
A0A0B0PCH0_GOSAR	3.8e-06	84.21	Choline dehydrogenase OS=Gossypium arboreum GN=F383_04493 PE=4 SV=1	[more]

BLAST of CmoCh04G018540 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G018540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|719979299\|ref\|XP_010249426.1\|	5.9e-08	63.79	PREDICTED: uncharacterized protein LOC104591967 [Nelumbo nucifera]	[more]
gi\|778704935\|ref\|XP_011655607.1\|	1.0e-07	90.00	PREDICTED: uncharacterized protein LOC101214056 isoform X2 [Cucumis sativus]	[more]
gi\|700196582\|gb\|KGN51759.1\|	1.0e-07	90.00	hypothetical protein Csa_5G598670 [Cucumis sativus]	[more]
gi\|778704933\|ref\|XP_011655606.1\|	1.0e-07	90.00	PREDICTED: uncharacterized protein LOC101214056 isoform X1 [Cucumis sativus]	[more]
gi\|719984419\|ref\|XP_010251070.1\|	6.5e-07	85.00	PREDICTED: uncharacterized protein LOC104593088 isoform X3 [Nelumbo nucifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G018540.1	CmoCh04G018540.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G018540	Cucumber (Chinese Long) v3	cmocucB0808
CmoCh04G018540	Cucumber (Chinese Long) v3	cmocucB0875
CmoCh04G018540	Watermelon (97103) v2	cmowmbB730
CmoCh04G018540	Watermelon (97103) v2	cmowmbB763
CmoCh04G018540	Wax gourd	cmowgoB0861
CmoCh04G018540	Wax gourd	cmowgoB0890
CmoCh04G018540	Cucurbita moschata (Rifu)	cmocmoB341
CmoCh04G018540	Cucurbita moschata (Rifu)	cmocmoB472
CmoCh04G018540	Cucumber (Gy14) v1	cgycmoB0794
CmoCh04G018540	Cucumber (Gy14) v1	cgycmoB1092
CmoCh04G018540	Cucurbita maxima (Rimu)	cmacmoB189
CmoCh04G018540	Cucurbita maxima (Rimu)	cmacmoB422
CmoCh04G018540	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G018540	Cucurbita maxima (Rimu)	cmacmoB785
CmoCh04G018540	Wild cucumber (PI 183967)	cmocpiB693
CmoCh04G018540	Wild cucumber (PI 183967)	cmocpiB748
CmoCh04G018540	Cucumber (Chinese Long) v2	cmocuB682
CmoCh04G018540	Cucumber (Chinese Long) v2	cmocuB739
CmoCh04G018540	Melon (DHL92) v3.5.1	cmomeB632
CmoCh04G018540	Melon (DHL92) v3.5.1	cmomeB673
CmoCh04G018540	Watermelon (Charleston Gray)	cmowcgB655
CmoCh04G018540	Watermelon (Charleston Gray)	cmowcgB683
CmoCh04G018540	Watermelon (97103) v1	cmowmB666
CmoCh04G018540	Watermelon (97103) v1	cmowmB694
CmoCh04G018540	Cucurbita pepo (Zucchini)	cmocpeB646
CmoCh04G018540	Cucurbita pepo (Zucchini)	cmocpeB656
CmoCh04G018540	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G018540	Bottle gourd (USVL1VR-Ls)	cmolsiB661
CmoCh04G018540	Bottle gourd (USVL1VR-Ls)	cmolsiB698
CmoCh04G018540	Cucumber (Gy14) v2	cgybcmoB232
CmoCh04G018540	Cucumber (Gy14) v2	cgybcmoB653
CmoCh04G018540	Melon (DHL92) v3.6.1	cmomedB721
CmoCh04G018540	Melon (DHL92) v3.6.1	cmomedB761
CmoCh04G018540	Silver-seed gourd	carcmoB0343
CmoCh04G018540	Silver-seed gourd	carcmoB0685
CmoCh04G018540	Silver-seed gourd	carcmoB0858
CmoCh04G018540	Silver-seed gourd	carcmoB0985