CmoCh04G018320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G018320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Signal recognition particle receptor subunit beta
Location	Cmo_Chr04 : 9199482 .. 9200609 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGTGCGGAACAGTGGAAGGTTCAGGTGGAGCAATTGAAAGTCCATATGGAGCAATGGCTAGAACAAGGCTTGGAGCTTGTTCACCAAATACCCCCAATTCAACTCTACGTTGGGGTTGCTGTGTTGTTATTTACCACTCTGCTTCTTTTATTGAGTGAGTCTTTCTCTTTATCTGAATGTGCCATTCTGTAATGGTATATGGTGGAACATTTTGGAATTGAAATTTACTCCCCCTTCTCTCCCCGCAGCTCGCTTGTTTAAGCGCAGAAAATCGAACATCATTCTCCTCAGTGGGCTCAGTGGAAGTGGGAAAACTGTTCTTTTTTATCAAGTAAGCATCTGCCTTGTTGGTTTTTTGCATTCTTCATATACTTCGATTCCAATTGATTAAGCCTTTTGCCATATGAGTTTATACACTAACTATGTTTCTCATCATCTTCTCAAGAAGTAGCCTTAAAGCCCCTAATGTTCTTTTGGAATACTCTGTAGACATTCTTGGTGTTTGATGTCTTGGATACTTCAAAGCATAGCATAATGATTAATTCATGTCTGACAATGCTGTTATATACAATTTGAGACGAAGCATAATTTCTTTTGGGTGTATGGTGATGCTATACCCACCTATATATATGTGCTAAAGATTAATGTATTAAGGGAAAGAAGGGGGGAAAAACCTCTTGCCTTCTAAATGTGTTGTCATTTATGATGTTTTTATGCCTTTGCAGCTTCGTGATGGTTCTTCCCATCAGGGTACTGTTACATCAATGGAACCTAATGAGGGTACTTTTGTGCTTCATTCTGAAATAACCAAGGTAATTTCTGTTTTCTAGCACTGATACTCAGGAATTGAGAATGCTCCATCGCCGATCCATTTCAGCTTTGAAATCAATACGATCATTGCCGCTTGGTTTCTGTTTCCAGCAGTCTTTAAAATAACAGATATTTTTTTTTCTTTGTGTGTCTTGGTAGAAGGACAAACTGAAGCCTGTTCATCTTGTTGATGTTCCTGGGCATTCTCGCCTTCGAGCCAAACTAGATGAATTTCTGCCTCAAGCAGCTGGTGTAGTCTTTGTGGTGGATGCTTTAGATTTTTTGCCCAACTGTCGTGCAGCTTCAGAGTAA

mRNA sequence

ATGGAGGGTGCGGAACAGTGGAAGGTTCAGGTGGAGCAATTGAAAGTCCATATGGAGCAATGGCTAGAACAAGGCTTGGAGCTTGTTCACCAAATACCCCCAATTCAACTCTACGTTGGGGTTGCTGTGTTGTTATTTACCACTCTGCTTCTTTTATTGACTCGCTTGTTTAAGCGCAGAAAATCGAACATCATTCTCCTCAGTGGGCTCAGTGGAAGTGGGAAAACTGTTCTTTTTTATCAACTTCGTGATGGTTCTTCCCATCAGGGTACTGTTACATCAATGGAACCTAATGAGGGTACTTTTGTGCTTCATTCTGAAATAACCAAGAAGGACAAACTGAAGCCTGTTCATCTTGTTGATGTTCCTGGGCATTCTCGCCTTCGAGCCAAACTAGATGAATTTCTGCCTCAAGCAGCTGGTGTAGTCTTTGTGGTGGATGCTTTAGATTTTTTGCCCAACTGTCGTGCAGCTTCAGAGTAA

Coding sequence (CDS)

ATGGAGGGTGCGGAACAGTGGAAGGTTCAGGTGGAGCAATTGAAAGTCCATATGGAGCAATGGCTAGAACAAGGCTTGGAGCTTGTTCACCAAATACCCCCAATTCAACTCTACGTTGGGGTTGCTGTGTTGTTATTTACCACTCTGCTTCTTTTATTGACTCGCTTGTTTAAGCGCAGAAAATCGAACATCATTCTCCTCAGTGGGCTCAGTGGAAGTGGGAAAACTGTTCTTTTTTATCAACTTCGTGATGGTTCTTCCCATCAGGGTACTGTTACATCAATGGAACCTAATGAGGGTACTTTTGTGCTTCATTCTGAAATAACCAAGAAGGACAAACTGAAGCCTGTTCATCTTGTTGATGTTCCTGGGCATTCTCGCCTTCGAGCCAAACTAGATGAATTTCTGCCTCAAGCAGCTGGTGTAGTCTTTGTGGTGGATGCTTTAGATTTTTTGCCCAACTGTCGTGCAGCTTCAGAGTAA

Homology

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BLAST of CmoCh04G018320 vs. Swiss-Prot
Match: SRPRB_DICDI (Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN=srprb PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.9e-07
Identity = 30/96 (31.25%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 59  RRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKPVH 118
           +R  NI +L GLS +GKT L   L +      T TS+  N G ++  ++       K + 
Sbjct: 83  KRGVNIAIL-GLSNAGKTALLLNLTNVDKKISTHTSITTNNGVYITENK-------KKLP 142

Query: 119 LVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPN 155
           ++DVPG+ + +A L + L  +A +++V+D   F+ N
Sbjct: 143 IIDVPGNGKAKASLPKILSNSACIIYVIDGTTFIDN 170

[Close]

BLAST of CmoCh04G018320 vs. Swiss-Prot
Match: SRPRB_HUMAN (Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-06
Identity = 46/145 (31.72%), Postives = 78/145 (53.79%), Query Frame = 1


Query: 19  EQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSN--IILLSGLSGSGKT 78
           + +L+   + + Q  P  L V VAVL    L L+  +L + R+S+   +LL GL  SGKT
Sbjct: 20  QPYLDTLRQELQQTDPTLLSVVVAVLA-VLLTLVFWKLIRSRRSSQRAVLLVGLCDSGKT 79

Query: 79  VLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKPVHLVDVPGHSRLRAK-LDEF 138
           +LF +L  G  ++ T TS+  +   + +++     ++   + L+D+PGH  LR + L+ F
Sbjct: 80  LLFVRLLTG-LYRDTQTSITDSCAVYRVNN-----NRGNSLTLIDLPGHESLRLQFLERF 139

Query: 139 LPQAAGVVFVVDALDFLPNCRAASE 161
              A  +VFVVD+  F    +  +E
Sbjct: 140 KSSARAIVFVVDSAAFQREVKDVAE 157

[Close]

BLAST of CmoCh04G018320 vs. TrEMBL
Match: E5GBI2_CUCME (Signal recognition particle receptor subunit beta OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.4e-77
Identity = 150/160 (93.75%), Postives = 154/160 (96.25%), Query Frame = 1


Query: 1   MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRR 60
           MEG EQWKVQVEQLKV MEQWLE+GLE VHQIPPIQLYVGV VLLFTTLLLLLTRLFKRR
Sbjct: 1   MEGTEQWKVQVEQLKVQMEQWLERGLEFVHQIPPIQLYVGVGVLLFTTLLLLLTRLFKRR 60

Query: 61  KSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKPVHLV 120
           KSN I+LSGLSGSGKT+LFYQLRDGSSHQGTVTSMEPNEGTFVLHSEI KKDKLKPVHLV
Sbjct: 61  KSNTIVLSGLSGSGKTILFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIAKKDKLKPVHLV 120

Query: 121 DVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE 161
           DVPGHSRLRAKLD+FLPQAAGVVFVVDALDFLPNCRAASE
Sbjct: 121 DVPGHSRLRAKLDDFLPQAAGVVFVVDALDFLPNCRAASE 160

[Close]

BLAST of CmoCh04G018320 vs. TrEMBL
Match: A0A0A0KSA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G600910 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.4e-77
Identity = 150/160 (93.75%), Postives = 153/160 (95.62%), Query Frame = 1


Query: 1   MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRR 60
           MEG EQWKVQVEQLKV MEQWLEQGLE VHQIPPIQLYVGV VLLFTTLLLL TRLFKRR
Sbjct: 1   MEGTEQWKVQVEQLKVQMEQWLEQGLEFVHQIPPIQLYVGVGVLLFTTLLLLFTRLFKRR 60

Query: 61  KSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKPVHLV 120
           KSN I+LSGLSGSGKT+LFYQLRDGSSHQGTVTSMEPNEGTFVLHSEI KKDKLKPVHLV
Sbjct: 61  KSNTIVLSGLSGSGKTILFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIAKKDKLKPVHLV 120

Query: 121 DVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE 161
           DVPGHSRLRAKLD+FLPQAAGVVFVVDALDFLPNCRAASE
Sbjct: 121 DVPGHSRLRAKLDDFLPQAAGVVFVVDALDFLPNCRAASE 160

[Close]

BLAST of CmoCh04G018320 vs. TrEMBL
Match: M5WV40_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009762mg PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 9.1e-61
Identity = 122/173 (70.52%), Postives = 139/173 (80.35%), Query Frame = 1


Query: 1   MEGAEQWKVQVEQLK-------------VHMEQWLEQGLELVHQIPPIQLYVGVAVLLFT 60
           MEG EQWKV  EQ K             +  E+W  Q LE +HQ+PP Q+Y  +A+L+FT
Sbjct: 1   MEGLEQWKVLAEQWKKQAEKWSSQALEHIQAEKWSSQALEYIHQVPPEQIYAAIAILIFT 60

Query: 61  TLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSE 120
           + LL+L RLFKR K+N ILLSGLSGSGKT+LFYQLRDGSSHQGTVTSMEPNEGTFVLHSE
Sbjct: 61  SFLLILVRLFKRPKANTILLSGLSGSGKTLLFYQLRDGSSHQGTVTSMEPNEGTFVLHSE 120

Query: 121 ITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE 161
            +K  K+ PVHLVDVPGHSRLRAKLD+FLPQAAG+VFVVDAL+FLPNCRAASE
Sbjct: 121 KSKNGKVNPVHLVDVPGHSRLRAKLDDFLPQAAGIVFVVDALEFLPNCRAASE 173

[Close]

BLAST of CmoCh04G018320 vs. TrEMBL
Match: A0A061GDY8_THECC (Signal recognition particle receptor subunit beta isoform 1 OS=Theobroma cacao GN=TCM_016611 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.2e-60
Identity = 127/167 (76.05%), Postives = 139/167 (83.23%), Query Frame = 1


Query: 1   MEGAEQWKVQVEQLKVHME-------QWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLL 60
           MEG EQWK Q+EQLK  +E       QWL Q +E ++QIPPIQLY  VAVLL +TLLLL 
Sbjct: 1   MEGMEQWKDQLEQLKSQLEPWKNQLEQWLHQAIEFLNQIPPIQLYAAVAVLLVSTLLLLS 60

Query: 61  TRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDK 120
             LFKR KSN I+L+GLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVL+SE  KK K
Sbjct: 61  FHLFKRTKSNSIVLTGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLNSESYKKGK 120

Query: 121 LKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE 161
            KPVHLVDVPGHSRL+ KLDEFLPQAAG+VFVVDAL+FLPNCR ASE
Sbjct: 121 TKPVHLVDVPGHSRLQPKLDEFLPQAAGIVFVVDALEFLPNCRLASE 167

[Close]

BLAST of CmoCh04G018320 vs. TrEMBL
Match: B9GQT9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02250g PE=4 SV=2)

HSP 1 Score: 236.1 bits (601), Expect = 2.9e-59
Identity = 119/160 (74.38%), Postives = 133/160 (83.12%), Query Frame = 1


Query: 1   MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRR 60
           MEG EQWK + +Q       WL+QG+E  HQ+PP QLY  VAVLLFTTLLLL  R+ KR 
Sbjct: 1   MEGIEQWKTEAQQ-------WLQQGIEYAHQLPPTQLYAAVAVLLFTTLLLLTIRMLKRT 60

Query: 61  KSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKPVHLV 120
           KSN I+LSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTF+LHSE  KK K+KPVH+V
Sbjct: 61  KSNTIVLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFLLHSESAKKGKIKPVHVV 120

Query: 121 DVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE 161
           DVPGHSRLR KLD+FLPQAAG+VFVVDAL+FLPN  A +E
Sbjct: 121 DVPGHSRLRPKLDDFLPQAAGIVFVVDALEFLPNLSAVTE 153

[Close]

BLAST of CmoCh04G018320 vs. TAIR10
Match: AT5G05670.2 (AT5G05670.2 signal recognition particle binding)

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-60
Identity = 116/151 (76.82%), Postives = 131/151 (86.75%), Query Frame = 1


Query: 11  VEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLT-RLFKRRKSNIILLSG 70
           +E LK+  EQW  QG+E + +IPP QLY  + VLLFTT+LL L+ RL +R KSN +LLSG
Sbjct: 4   LEDLKILAEQWSHQGIEYLQKIPPNQLYAAIGVLLFTTILLFLSIRLVRRTKSNTVLLSG 63

Query: 71  LSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKPVHLVDVPGHSRLR 130
           L+GSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSE TKK K+KPVHLVDVPGHSRLR
Sbjct: 64  LTGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSENTKKGKIKPVHLVDVPGHSRLR 123

Query: 131 AKLDEFLPQAAGVVFVVDALDFLPNCRAASE 161
            KL+EFLPQAA +VFVVDAL+FLPNCRAASE
Sbjct: 124 PKLEEFLPQAAAIVFVVDALEFLPNCRAASE 154

[Close]

BLAST of CmoCh04G018320 vs. TAIR10
Match: AT2G18770.1 (AT2G18770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 214.9 bits (546), Expect = 3.5e-56
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 1


Query: 11  VEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGL 70
           +E LK+  EQW +QGLE V +IPP QLY  + VLL  T+ LL  RLF+R KSN +LLSGL
Sbjct: 4   LEDLKIVAEQWSKQGLEFVQKIPPPQLYTAIGVLLLATIWLLSIRLFRRTKSNTVLLSGL 63

Query: 71  SGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSE-ITKKDKLKPVHLVDVPGHSRLR 130
           SGSGKTVLFYQLRDGSSHQG VTSMEPNEGTFVLH+E  TKK K+KPVHL+DVPGHSRL 
Sbjct: 64  SGSGKTVLFYQLRDGSSHQGAVTSMEPNEGTFVLHNENNTKKGKVKPVHLIDVPGHSRLI 123

Query: 131 AKLDEFLPQAAGVVFVVDALDFLPNCRAASE 161
           +KL+E+LP+AA VVFVVDAL+FLPN RAASE
Sbjct: 124 SKLEEYLPRAAAVVFVVDALEFLPNIRAASE 154

[Close]

BLAST of CmoCh04G018320 vs. NCBI nr
Match: gi|449434947|ref|XP_004135257.1| (PREDICTED: signal recognition particle receptor subunit beta-like [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 3.4e-77
Identity = 150/160 (93.75%), Postives = 153/160 (95.62%), Query Frame = 1


Query: 1   MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRR 60
           MEG EQWKVQVEQLKV MEQWLEQGLE VHQIPPIQLYVGV VLLFTTLLLL TRLFKRR
Sbjct: 1   MEGTEQWKVQVEQLKVQMEQWLEQGLEFVHQIPPIQLYVGVGVLLFTTLLLLFTRLFKRR 60

Query: 61  KSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKPVHLV 120
           KSN I+LSGLSGSGKT+LFYQLRDGSSHQGTVTSMEPNEGTFVLHSEI KKDKLKPVHLV
Sbjct: 61  KSNTIVLSGLSGSGKTILFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIAKKDKLKPVHLV 120

Query: 121 DVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE 161
           DVPGHSRLRAKLD+FLPQAAGVVFVVDALDFLPNCRAASE
Sbjct: 121 DVPGHSRLRAKLDDFLPQAAGVVFVVDALDFLPNCRAASE 160

[Close]

BLAST of CmoCh04G018320 vs. NCBI nr
Match: gi|659090765|ref|XP_008446189.1| (PREDICTED: signal recognition particle receptor subunit beta-like [Cucumis melo])

HSP 1 Score: 296.2 bits (757), Expect = 3.4e-77
Identity = 150/160 (93.75%), Postives = 154/160 (96.25%), Query Frame = 1


Query: 1   MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRR 60
           MEG EQWKVQVEQLKV MEQWLE+GLE VHQIPPIQLYVGV VLLFTTLLLLLTRLFKRR
Sbjct: 1   MEGTEQWKVQVEQLKVQMEQWLERGLEFVHQIPPIQLYVGVGVLLFTTLLLLLTRLFKRR 60

Query: 61  KSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKPVHLV 120
           KSN I+LSGLSGSGKT+LFYQLRDGSSHQGTVTSMEPNEGTFVLHSEI KKDKLKPVHLV
Sbjct: 61  KSNTIVLSGLSGSGKTILFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIAKKDKLKPVHLV 120

Query: 121 DVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE 161
           DVPGHSRLRAKLD+FLPQAAGVVFVVDALDFLPNCRAASE
Sbjct: 121 DVPGHSRLRAKLDDFLPQAAGVVFVVDALDFLPNCRAASE 160

[Close]

BLAST of CmoCh04G018320 vs. NCBI nr
Match: gi|595848076|ref|XP_007209456.1| (hypothetical protein PRUPE_ppa009762mg [Prunus persica])

HSP 1 Score: 241.1 bits (614), Expect = 1.3e-60
Identity = 122/173 (70.52%), Postives = 139/173 (80.35%), Query Frame = 1


Query: 1   MEGAEQWKVQVEQLK-------------VHMEQWLEQGLELVHQIPPIQLYVGVAVLLFT 60
           MEG EQWKV  EQ K             +  E+W  Q LE +HQ+PP Q+Y  +A+L+FT
Sbjct: 1   MEGLEQWKVLAEQWKKQAEKWSSQALEHIQAEKWSSQALEYIHQVPPEQIYAAIAILIFT 60

Query: 61  TLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSE 120
           + LL+L RLFKR K+N ILLSGLSGSGKT+LFYQLRDGSSHQGTVTSMEPNEGTFVLHSE
Sbjct: 61  SFLLILVRLFKRPKANTILLSGLSGSGKTLLFYQLRDGSSHQGTVTSMEPNEGTFVLHSE 120

Query: 121 ITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE 161
            +K  K+ PVHLVDVPGHSRLRAKLD+FLPQAAG+VFVVDAL+FLPNCRAASE
Sbjct: 121 KSKNGKVNPVHLVDVPGHSRLRAKLDDFLPQAAGIVFVVDALEFLPNCRAASE 173

[Close]

BLAST of CmoCh04G018320 vs. NCBI nr
Match: gi|590679972|ref|XP_007040732.1| (Signal recognition particle receptor subunit beta isoform 1 [Theobroma cacao])

HSP 1 Score: 240.7 bits (613), Expect = 1.7e-60
Identity = 127/167 (76.05%), Postives = 139/167 (83.23%), Query Frame = 1


Query: 1   MEGAEQWKVQVEQLKVHME-------QWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLL 60
           MEG EQWK Q+EQLK  +E       QWL Q +E ++QIPPIQLY  VAVLL +TLLLL 
Sbjct: 1   MEGMEQWKDQLEQLKSQLEPWKNQLEQWLHQAIEFLNQIPPIQLYAAVAVLLVSTLLLLS 60

Query: 61  TRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDK 120
             LFKR KSN I+L+GLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVL+SE  KK K
Sbjct: 61  FHLFKRTKSNSIVLTGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLNSESYKKGK 120

Query: 121 LKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE 161
            KPVHLVDVPGHSRL+ KLDEFLPQAAG+VFVVDAL+FLPNCR ASE
Sbjct: 121 TKPVHLVDVPGHSRLQPKLDEFLPQAAGIVFVVDALEFLPNCRLASE 167

[Close]

BLAST of CmoCh04G018320 vs. NCBI nr
Match: gi|645265553|ref|XP_008238206.1| (PREDICTED: signal recognition particle receptor subunit beta-like [Prunus mume])

HSP 1 Score: 239.6 bits (610), Expect = 3.8e-60
Identity = 121/173 (69.94%), Postives = 139/173 (80.35%), Query Frame = 1


Query: 1   MEGAEQWKVQVEQLK-------------VHMEQWLEQGLELVHQIPPIQLYVGVAVLLFT 60
           MEG EQWKV  EQ K             +  E+W  Q LE +HQ+PP Q+Y  +A+L+FT
Sbjct: 1   MEGLEQWKVLGEQWKKQAEKWSSQALERIQAEKWSSQALEYIHQVPPEQIYAAIAILIFT 60

Query: 61  TLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSE 120
           + LL+L RLFKR K+N ILLSGLSGSGKT+LFYQLRDGSSHQGTVTSMEPNEGTFVLHSE
Sbjct: 61  SFLLILVRLFKRPKANTILLSGLSGSGKTLLFYQLRDGSSHQGTVTSMEPNEGTFVLHSE 120

Query: 121 ITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE 161
            +K  K+ PVHL+DVPGHSRLRAKLD+FLPQAAG+VFVVDAL+FLPNCRAASE
Sbjct: 121 KSKNGKVNPVHLIDVPGHSRLRAKLDDFLPQAAGIVFVVDALEFLPNCRAASE 173

The following BLAST results are available for this feature:

BLAST of CmoCh04G018320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRPRB_DICDI	4.9e-07	31.25	Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN...	[more]
SRPRB_HUMAN	3.2e-06	31.72	Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 ...	[more]

BLAST of CmoCh04G018320 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBI2_CUCME	2.4e-77	93.75	Signal recognition particle receptor subunit beta OS=Cucumis melo subsp. melo PE...	[more]
A0A0A0KSA6_CUCSA	2.4e-77	93.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G600910 PE=4 SV=1	[more]
M5WV40_PRUPE	9.1e-61	70.52	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009762mg PE=4 SV=1	[more]
A0A061GDY8_THECC	1.2e-60	76.05	Signal recognition particle receptor subunit beta isoform 1 OS=Theobroma cacao G...	[more]
B9GQT9_POPTR	2.9e-59	74.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02250g PE=4 SV=2	[more]

BLAST of CmoCh04G018320 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05670.2	2.4e-60	76.82	signal recognition particle binding	[more]
AT2G18770.1	3.5e-56	73.51	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]

BLAST of CmoCh04G018320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434947\|ref\|XP_004135257.1\|	3.4e-77	93.75	PREDICTED: signal recognition particle receptor subunit beta-like [Cucumis sativ...	[more]
gi\|659090765\|ref\|XP_008446189.1\|	3.4e-77	93.75	PREDICTED: signal recognition particle receptor subunit beta-like [Cucumis melo]	[more]
gi\|595848076\|ref\|XP_007209456.1\|	1.3e-60	70.52	hypothetical protein PRUPE_ppa009762mg [Prunus persica]	[more]
gi\|590679972\|ref\|XP_007040732.1\|	1.7e-60	76.05	Signal recognition particle receptor subunit beta isoform 1 [Theobroma cacao]	[more]
gi\|645265553\|ref\|XP_008238206.1\|	3.8e-60	69.94	PREDICTED: signal recognition particle receptor subunit beta-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019009	SRP_receptor_beta_su
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007264	small GTPase mediated signal transduction
cellular_component	GO:0005622	intracellular
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G018320.1	CmoCh04G018320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019009	Signal recognition particle receptor, beta subunit	PFAM	PF09439	SRPRB	coord: 61..148 score: 1.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 53..157 score: 7.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 57..152 score: 1.44
None	No IPR available	unknown	Coil	Coil	coord: 4..24 scor
None	No IPR available	PANTHER	PTHR11485	TRANSFERRIN	coord: 1..160 score: 4.6
None	No IPR available	PANTHER	PTHR11485:SF32	SUBFAMILY NOT NAMED	coord: 1..160 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G018320	Cucurbita maxima (Rimu)	cmacmoB422
CmoCh04G018320	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G018320	Cucurbita maxima (Rimu)	cmacmoB785
CmoCh04G018320	Wild cucumber (PI 183967)	cmocpiB693
CmoCh04G018320	Wild cucumber (PI 183967)	cmocpiB748
CmoCh04G018320	Cucumber (Chinese Long) v2	cmocuB682
CmoCh04G018320	Cucumber (Chinese Long) v2	cmocuB739
CmoCh04G018320	Melon (DHL92) v3.5.1	cmomeB632
CmoCh04G018320	Melon (DHL92) v3.5.1	cmomeB673
CmoCh04G018320	Watermelon (Charleston Gray)	cmowcgB655
CmoCh04G018320	Watermelon (Charleston Gray)	cmowcgB683
CmoCh04G018320	Watermelon (97103) v1	cmowmB694
CmoCh04G018320	Cucurbita pepo (Zucchini)	cmocpeB646
CmoCh04G018320	Cucurbita pepo (Zucchini)	cmocpeB656
CmoCh04G018320	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G018320	Bottle gourd (USVL1VR-Ls)	cmolsiB661
CmoCh04G018320	Bottle gourd (USVL1VR-Ls)	cmolsiB698
CmoCh04G018320	Cucumber (Gy14) v2	cgybcmoB232
CmoCh04G018320	Cucumber (Gy14) v2	cgybcmoB653
CmoCh04G018320	Melon (DHL92) v3.6.1	cmomedB721
CmoCh04G018320	Melon (DHL92) v3.6.1	cmomedB761
CmoCh04G018320	Silver-seed gourd	carcmoB0343
CmoCh04G018320	Silver-seed gourd	carcmoB0685
CmoCh04G018320	Silver-seed gourd	carcmoB0985
CmoCh04G018320	Cucumber (Chinese Long) v3	cmocucB0808
CmoCh04G018320	Cucumber (Chinese Long) v3	cmocucB0875
CmoCh04G018320	Watermelon (97103) v2	cmowmbB730
CmoCh04G018320	Watermelon (97103) v2	cmowmbB763
CmoCh04G018320	Wax gourd	cmowgoB0861
CmoCh04G018320	Wax gourd	cmowgoB0890
CmoCh04G018320	Cucurbita moschata (Rifu)	cmocmoB341
CmoCh04G018320	Cucurbita moschata (Rifu)	cmocmoB472
CmoCh04G018320	Cucumber (Gy14) v1	cgycmoB0794
CmoCh04G018320	Cucumber (Gy14) v1	cgycmoB1092
CmoCh04G018320	Cucurbita maxima (Rimu)	cmacmoB189