CmoCh04G018300 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G018300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	CRS2-associated factor 2
Location	Cmo_Chr04 : 9197384 .. 9198729 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTGCTGGTAATTTATACAAAATGGTCTCATTTGATCCCCTTTATAAGTTTTGAGCTTAATCTATCTCCTTTTGCAGCAAAAAATGGTGTGTACATTTCGTTGGTGAATGACGTAAGGCACGCTTTCGAAGGAAGCATTCTGGTGAAGGTTGATTGCACTGGGATGCATGAAAGTGATTATAAAAAGTTGGGTGCTAAACTCAAGGTTGGCATACATTTTCATCCTTTAATCTCTGCCTCGTTCTTTACTCATTGCCTTGTCTATGGTGATTCTTAGAACGTTGCTTGCATAGAAATTAGTAGTTAGAGCCAAAACTCCTCATACAGTCTGCTATATCAATGGAACTGAGTTGAGCCTTGTCATTCTCTTTTCTGCCTATGTATATTTGCTTGCGATATCGTGTAAAACTTCGAACTCGATTGCAATTGCATCTTACGATTTCTGTATGCAGCACGCTTGAAATGCTGGCTCTGTATAGTTTACTTCGGAAGCAGTAGTTTGAAGATCATACAATGATCGTTTGACGTAGATTATTAATTATCGTTCTTCTTGATTTTTGTTTACAGGAATTGGTTCCTTGCGTGTTATTATCATTTGACAACGAACAGATATTGATGTGGAGGGGAAAGGATTGGAAGTCAGATATTTCAGAAGATCCTTCTGCTACACTTCCTAGTCAAGCACGCACAAATGATGGTTTGTGTTCATCTGGTTAGCATATTCCTTTCATATAATTAAACACTCAATAATCTTTGCTTTTTTGTTCCTTTTTCTAGGCGAGTCTATTGAGAATGGTGACCTCTTACATGGCAATCATCATACGATCAAAACTAGCCCAAAAATGAAGCTGTTATGGGAGAAGGCTATTGATTCAAACAAGGCATTGCTGCTAAATGAGATAGGTCTTGCTCCGGATGACCTTTTAGAGAAAGTTGAGGAGTTCGAGAGAATTTCACAAGCAACCGAGCATTCATATCCAGCATTAATCATGTCAAGTGAAGATGACAGCAGCAGCCCAGATGACAACCTTGAAAGTCAGGATCGCGACGAATCTAACTACAGCTCCGACGATGACGAAGATCGGGAAGGAGACCTTTTTGATATTGTTAACCCGACTGTACCTATGGGATCATTACCCGTTGATATCATAGCAAAGAAGCTCAGACCTGAATAGATCAATGTTGCTTTGGTTAGTAAATTTCATGTTTGTGTATGACAAGGGAAAAGCTGCATATTTTCAGTGTATCTATTTGTAAAGAAAGTAATTGTACTTTGAAACTCATTAACCAAAACAAGTTGAAAAGGAATAAAGAATTGGTTCCTACTGTCTTTAGACACTA

mRNA sequence

ATGCAATTGCTGGTAATTTATACAAAATGGTCTCATTTGATCCCCTTTATAAGTTTTGAGCTTAATCTATCTCCTTTTGCAGCAAAAAATGGTGTGTACATTTCGTTGGTGAATGACGTAAGGCACGCTTTCGAAGGAAGCATTCTGGTGAAGGTTGATTGCACTGGGATGCATGAAAGTGATTATAAAAAGTTGGGTGCTAAACTCAAGGAATTGGTTCCTTGCGTGTTATTATCATTTGACAACGAACAGATATTGATGTGGAGGGGAAAGGATTGGAAGTCAGATATTTCAGAAGATCCTTCTGCTACACTTCCTAGTCAAGCACGCACAAATGATGGCGAGTCTATTGAGAATGGTGACCTCTTACATGGCAATCATCATACGATCAAAACTAGCCCAAAAATGAAGCTGTTATGGGAGAAGGCTATTGATTCAAACAAGGCATTGCTGCTAAATGAGATAGGTCTTGCTCCGGATGACCTTTTAGAGAAAGTTGAGGAGTTCGAGAGAATTTCACAAGCAACCGAGCATTCATATCCAGCATTAATCATGTCAAGTGAAGATGACAGCAGCAGCCCAGATGACAACCTTGAAAGTCAGGATCGCGACGAATCTAACTACAGCTCCGACGATGACGAAGATCGGGAAGGAGACCTTTTTGATATTGTTAACCCGACTGTACCTATGGGATCATTACCCGTTGATATCATAGCAAAGAAGCTCAGACCTGAATAGATCAATGTTGCTTTGGTTAGTAAATTTCATGTTTGTGTATGACAAGGGAAAAGCTGCATATTTTCAGTGTATCTATTTGTAAAGAAAGTAATTGTACTTTGAAACTCATTAACCAAAACAAGTTGAAAAGGAATAAAGAATTGGTTCCTACTGTCTTTAGACACTA

Coding sequence (CDS)

ATGCAATTGCTGGTAATTTATACAAAATGGTCTCATTTGATCCCCTTTATAAGTTTTGAGCTTAATCTATCTCCTTTTGCAGCAAAAAATGGTGTGTACATTTCGTTGGTGAATGACGTAAGGCACGCTTTCGAAGGAAGCATTCTGGTGAAGGTTGATTGCACTGGGATGCATGAAAGTGATTATAAAAAGTTGGGTGCTAAACTCAAGGAATTGGTTCCTTGCGTGTTATTATCATTTGACAACGAACAGATATTGATGTGGAGGGGAAAGGATTGGAAGTCAGATATTTCAGAAGATCCTTCTGCTACACTTCCTAGTCAAGCACGCACAAATGATGGCGAGTCTATTGAGAATGGTGACCTCTTACATGGCAATCATCATACGATCAAAACTAGCCCAAAAATGAAGCTGTTATGGGAGAAGGCTATTGATTCAAACAAGGCATTGCTGCTAAATGAGATAGGTCTTGCTCCGGATGACCTTTTAGAGAAAGTTGAGGAGTTCGAGAGAATTTCACAAGCAACCGAGCATTCATATCCAGCATTAATCATGTCAAGTGAAGATGACAGCAGCAGCCCAGATGACAACCTTGAAAGTCAGGATCGCGACGAATCTAACTACAGCTCCGACGATGACGAAGATCGGGAAGGAGACCTTTTTGATATTGTTAACCCGACTGTACCTATGGGATCATTACCCGTTGATATCATAGCAAAGAAGCTCAGACCTGAATAG

Homology

[Close]

BLAST of CmoCh04G018300 vs. Swiss-Prot
Match: CAF2P_ARATH (CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana GN=At1g23400 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.5e-52
Identity = 116/222 (52.25%), Postives = 155/222 (69.82%), Query Frame = 1


Query: 28  AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILM 87
           +KNGVY+SLV DVR AFE S LVKVDC G+  SDYKK+GAKLKELVPCVLLSFD+EQILM
Sbjct: 343 SKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILM 402

Query: 88  WRGKDWKSDISEDPSATLPSQARTNDGESIENGD-----LLHGNHHTIKTSPKMKLLWEK 147
           WRG++WKS   ++P   +PS + TN    ++  D         N  T  +SPKM  LW++
Sbjct: 403 WRGREWKSRFVDNP--LIPSLSETNTTNELDPSDKPSEEQTVANPSTTISSPKMISLWQR 462

Query: 148 AIDSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSPDDNLESQD 207
           A++S+KA++L E+ L PDDLL+KVEE E  S A EH+Y A+++S+ D ++  +D ++ +D
Sbjct: 463 ALESSKAVILEELDLGPDDLLKKVEELEGTSLAAEHTYTAMVLSNTDGAA--EDYVDEKD 522

Query: 208 RDESNYSS-DDDEDREGDLFDIVNPTVPMGSLPVDIIAKKLR 244
           R E  YS  DDD D E    + ++P  P+GSLPVD I +KLR
Sbjct: 523 RSEEYYSDIDDDFDDECSDDESLDPVGPVGSLPVDKIVRKLR 560

[Close]

BLAST of CmoCh04G018300 vs. Swiss-Prot
Match: CAF2P_MAIZE (CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.9e-43
Identity = 105/240 (43.75%), Postives = 149/240 (62.08%), Query Frame = 1


Query: 28  AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILM 87
           AKNG+YI+LV DVR AFEGS LVK+DC G++ SDYKK+GAKL++LVPCVLLSFD+EQILM
Sbjct: 374 AKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDDEQILM 433

Query: 88  WRGKDWKSDISED-------PSATLPSQARTNDGESIENGDLLHGNHHTIKTSPKMKLLW 147
            RGK+WKS  S+        P   L   +  N  + + + +        ++  PKM  LW
Sbjct: 434 HRGKEWKSRYSKPLTLIPKVPKNNLAMTSVMNSSDEVSDANTQVAIREVLR--PKMFKLW 493

Query: 148 EKAIDSNKALLLNEI---GLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSS----- 207
           + A+DS+ ALLL++     L PD LL  VEEF   SQA EHS+PAL++++ D S+     
Sbjct: 494 KSAVDSSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLVTNGDASTDSLSA 553

Query: 208 -----SPDDNLESQDRDESNYSSD--DDEDREGDLFDIVNPTVPMGSLPVDIIAKKLRPE 246
                 P+ ++   +  +   S D  DDE  + D+F+ +  +VP+GSLP+D + ++L  E
Sbjct: 554 EYMNDEPETSVAGNEEGQLEQSPDLRDDEHFDVDMFERLESSVPLGSLPIDSMIERLNSE 611

[Close]

BLAST of CmoCh04G018300 vs. Swiss-Prot
Match: CAF2P_ORYSJ (CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.3e-40
Identity = 102/242 (42.15%), Postives = 146/242 (60.33%), Query Frame = 1


Query: 28  AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILM 87
           AKNG+YI LV DVR AFEGS LVK+DC G++ SDYKK+GAKL++LVPCVLLSFDNEQILM
Sbjct: 370 AKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDNEQILM 429

Query: 88  WRGKDWKSDISEDPSATLP---------SQARTNDGESIENGDLLHGNHHTIKTSPKMKL 147
           +RGK+WKS   + P   +P         S   ++  E+ ++ D L          PKM  
Sbjct: 430 FRGKEWKSRYPK-PLTLIPKIRKNNVPMSSDESSSDEATDDDDRLAVRE---VLRPKMFE 489

Query: 148 LWEKAIDSNKALLLNEI---GLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDS---- 207
           LW  AI+S+ AL+L++     L PD LL +VE+F   SQ  EHS+PA+++++++ +    
Sbjct: 490 LWTNAIESSVALMLDDAEVDALTPDSLLTRVEDFSVTSQVVEHSFPAVLVANDESNPDVL 549

Query: 208 ------SSPDDNLESQDRDESNYSSD--DDEDREGDLFDIVNPTVPMGSLPVDIIAKKLR 246
                   P+       + E   SSD  +D+  E D+   +  +VP+G+LP+D + K+L 
Sbjct: 550 NAEYTEDEPETGTLEPQQHEFTESSDVAEDDHFEDDMLKRLESSVPLGALPIDAVVKQLN 607

[Close]

BLAST of CmoCh04G018300 vs. Swiss-Prot
Match: CAF1P_MAIZE (CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-22
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 29  KNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMW 88
           KNGVY +LVN VR AFE   LV+VDC+G+++SD +K+GAKLK+LVPC+LLSF+ E ILMW
Sbjct: 326 KNGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMW 385

Query: 89  RGKDWKSDI 98
           RG DWKS +
Sbjct: 386 RGSDWKSSL 394

[Close]

BLAST of CmoCh04G018300 vs. Swiss-Prot
Match: CAF1P_ARATH (CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=2 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-21
Identity = 44/70 (62.86%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 29  KNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMW 88
           KNGVY  LV +V+ AFE   LV++DC GM  SD++K+GAKLK+LVPCVL+SF+NEQIL+W
Sbjct: 384 KNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIW 443

Query: 89  RGKDWKSDIS 99
           RG++WKS ++
Sbjct: 444 RGREWKSSLT 453

[Close]

BLAST of CmoCh04G018300 vs. TrEMBL
Match: A0A0A0KQ61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G600920 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.5e-94
Identity = 188/231 (81.39%), Postives = 200/231 (86.58%), Query Frame = 1


Query: 22  NLSPFA--AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLS 81
           NL P    AKNGVYISLVNDVRHAFEGSILVK+DCTGMHESDYKKLGAKLKELVPCVLLS
Sbjct: 327 NLLPICKLAKNGVYISLVNDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLS 386

Query: 82  FDNEQILMWRGKDWKSDISEDPSATLPSQARTND-----GESIENGDLLHGNHHTIKTSP 141
           FDNEQILMWRGKDWKS IS+D SA LPS+A +ND     GES+EN DLLHGNHHTIKTSP
Sbjct: 387 FDNEQILMWRGKDWKSIISDDRSAPLPSRASSNDSLGSPGESLENSDLLHGNHHTIKTSP 446

Query: 142 KMKLLWEKAIDSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSP 201
           KMKLLWE AIDSNKALLL+EIGLAPDDLLEKVEEFERISQATEHSYPA I SSE D SSP
Sbjct: 447 KMKLLWEHAIDSNKALLLDEIGLAPDDLLEKVEEFERISQATEHSYPAFITSSE-DVSSP 506

Query: 202 DDNLESQDRDESNYSSDDDEDREGDLFDIVNPTVPMGSLPVDIIAKKLRPE 246
           DD+ +SQD  E+NY+SDDD  RE DLFD  +P VP+GSLPVDIIAKKL  E
Sbjct: 507 DDSPKSQDHTEANYNSDDDVGREEDLFDNADPLVPLGSLPVDIIAKKLSSE 556

[Close]

BLAST of CmoCh04G018300 vs. TrEMBL
Match: E5GBI3_CUCME (RNA splicing factor OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 3.1e-92
Identity = 183/231 (79.22%), Postives = 201/231 (87.01%), Query Frame = 1


Query: 22  NLSPFA--AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLS 81
           NL P    AKNGVYISLV+DVRHAFEGSILVK+DCTGMHESDYKKLGAKLKELVPCVLLS
Sbjct: 374 NLLPICKLAKNGVYISLVDDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLS 433

Query: 82  FDNEQILMWRGKDWKSDISEDPSATLPSQARTND-----GESIENGDLLHGNHHTIKTSP 141
           FDNEQILMWRGKDWKS IS+D SA LPS+A +ND     GES+EN DLL+GNHHTIKTSP
Sbjct: 434 FDNEQILMWRGKDWKSVISDDRSAPLPSRASSNDSLGSSGESVENSDLLNGNHHTIKTSP 493

Query: 142 KMKLLWEKAIDSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSP 201
           KMKLLWE+AIDSNKAL+L+EIGLAPD+LLE+VEEFERISQATEHSYPA I SSE + SSP
Sbjct: 494 KMKLLWERAIDSNKALMLDEIGLAPDELLERVEEFERISQATEHSYPAFITSSE-EVSSP 553

Query: 202 DDNLESQDRDESNYSSDDDEDREGDLFDIVNPTVPMGSLPVDIIAKKLRPE 246
            D+ ESQD  E+NY+SDDD  RE DLFD V+P VP+GSLPVDIIAKKL  E
Sbjct: 554 ADSPESQDHSEANYNSDDDVGREEDLFDNVDPLVPLGSLPVDIIAKKLSSE 603

[Close]

BLAST of CmoCh04G018300 vs. TrEMBL
Match: A0A067GRV5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018444mg PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 7.7e-59
Identity = 132/225 (58.67%), Postives = 165/225 (73.33%), Query Frame = 1


Query: 27  AAKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQIL 86
           AAKNGVY++LV DVR+AFEGS LVKV+C GMH SDYKKLGAKLKELVPCVLLSFD+EQIL
Sbjct: 8   AAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQIL 67

Query: 87  MWRGKDWKSDISEDPSATLPSQ---ARTNDGESIENGDLLHGNHHTIKTSPKMKLLWEKA 146
           MWRGKDWKS   E PS + P     A   DG    + D   G   TI++SPKM  LW++A
Sbjct: 68  MWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQG---TIRSSPKMISLWKRA 127

Query: 147 IDSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSP----DDNLE 206
           I+S KAL+L+EI L PDDLL+KVEEFE ISQA EHSYPAL++S ED +SS     +D  +
Sbjct: 128 IESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQ 187

Query: 207 SQDRDESNYSSDDDEDREGDLFDI-VNPTVPMGSLPVDIIAKKLR 244
           S++ DE  +  +DD + + + +D   +  VP+GSLPVD IA++L+
Sbjct: 188 SENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQ 229

[Close]

BLAST of CmoCh04G018300 vs. TrEMBL
Match: V4SUL4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031138mg PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.9e-58
Identity = 131/224 (58.48%), Postives = 164/224 (73.21%), Query Frame = 1


Query: 28  AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILM 87
           AKNGVY++LV DVR+AFEGS LVKV+C GMH SDYKKLGAKLKELVPCVLLSFD+EQILM
Sbjct: 330 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 389

Query: 88  WRGKDWKSDISEDPSATLPSQ---ARTNDGESIENGDLLHGNHHTIKTSPKMKLLWEKAI 147
           WRGKDWKS   E PS + P     A   DG    + D   G   TI++SPKM  LW++AI
Sbjct: 390 WRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQG---TIRSSPKMISLWKRAI 449

Query: 148 DSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSP----DDNLES 207
           +S KAL+L+EI L PDDLL+KVEEFE ISQA EHSYPAL++S ED +SS     +D  +S
Sbjct: 450 ESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQS 509

Query: 208 QDRDESNYSSDDDEDREGDLFDI-VNPTVPMGSLPVDIIAKKLR 244
           ++ DE  +  +DD + + + +D   +  VP+GSLPVD IA++L+
Sbjct: 510 ENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQ 550

[Close]

BLAST of CmoCh04G018300 vs. TrEMBL
Match: A0A067GRK8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018444mg PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.9e-58
Identity = 131/224 (58.48%), Postives = 164/224 (73.21%), Query Frame = 1


Query: 28  AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILM 87
           AKNGVY++LV DVR+AFEGS LVKV+C GMH SDYKKLGAKLKELVPCVLLSFD+EQILM
Sbjct: 43  AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 102

Query: 88  WRGKDWKSDISEDPSATLPSQ---ARTNDGESIENGDLLHGNHHTIKTSPKMKLLWEKAI 147
           WRGKDWKS   E PS + P     A   DG    + D   G   TI++SPKM  LW++AI
Sbjct: 103 WRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQG---TIRSSPKMISLWKRAI 162

Query: 148 DSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSP----DDNLES 207
           +S KAL+L+EI L PDDLL+KVEEFE ISQA EHSYPAL++S ED +SS     +D  +S
Sbjct: 163 ESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQS 222

Query: 208 QDRDESNYSSDDDEDREGDLFDI-VNPTVPMGSLPVDIIAKKLR 244
           ++ DE  +  +DD + + + +D   +  VP+GSLPVD IA++L+
Sbjct: 223 ENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQ 263

[Close]

BLAST of CmoCh04G018300 vs. TAIR10
Match: AT1G23400.1 (AT1G23400.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 207.6 bits (527), Expect = 8.7e-54
Identity = 116/222 (52.25%), Postives = 155/222 (69.82%), Query Frame = 1


Query: 28  AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILM 87
           +KNGVY+SLV DVR AFE S LVKVDC G+  SDYKK+GAKLKELVPCVLLSFD+EQILM
Sbjct: 343 SKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILM 402

Query: 88  WRGKDWKSDISEDPSATLPSQARTNDGESIENGD-----LLHGNHHTIKTSPKMKLLWEK 147
           WRG++WKS   ++P   +PS + TN    ++  D         N  T  +SPKM  LW++
Sbjct: 403 WRGREWKSRFVDNP--LIPSLSETNTTNELDPSDKPSEEQTVANPSTTISSPKMISLWQR 462

Query: 148 AIDSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSPDDNLESQD 207
           A++S+KA++L E+ L PDDLL+KVEE E  S A EH+Y A+++S+ D ++  +D ++ +D
Sbjct: 463 ALESSKAVILEELDLGPDDLLKKVEELEGTSLAAEHTYTAMVLSNTDGAA--EDYVDEKD 522

Query: 208 RDESNYSS-DDDEDREGDLFDIVNPTVPMGSLPVDIIAKKLR 244
           R E  YS  DDD D E    + ++P  P+GSLPVD I +KLR
Sbjct: 523 RSEEYYSDIDDDFDDECSDDESLDPVGPVGSLPVDKIVRKLR 560

[Close]

BLAST of CmoCh04G018300 vs. TAIR10
Match: AT2G20020.1 (AT2G20020.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-22
Identity = 44/70 (62.86%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 29  KNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMW 88
           KNGVY  LV +V+ AFE   LV++DC GM  SD++K+GAKLK+LVPCVL+SF+NEQIL+W
Sbjct: 384 KNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIW 443

Query: 89  RGKDWKSDIS 99
           RG++WKS ++
Sbjct: 444 RGREWKSSLT 453

[Close]

BLAST of CmoCh04G018300 vs. TAIR10
Match: AT4G31010.1 (AT4G31010.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 95.1 bits (235), Expect = 6.3e-20
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 28  AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILM 87
           AKNG Y SLV  VR AF  S LV++DC G+   DYKK+GAKL++LVPC+L++FD EQ+++
Sbjct: 301 AKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVI 360

Query: 88  WRGKDWKSDISED 101
           WRGKD+K    +D
Sbjct: 361 WRGKDYKPPKEDD 373

[Close]

BLAST of CmoCh04G018300 vs. TAIR10
Match: AT5G54890.1 (AT5G54890.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 79.0 bits (193), Expect = 4.7e-15
Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 1


Query: 29  KNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMW 88
           +NGVY+++V  VR  FE   +V++DCT +  SD K++G KLKE+VPCV + F +EQI++W
Sbjct: 286 RNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILW 345

Query: 89  RGK 92
           RGK
Sbjct: 346 RGK 348

[Close]

BLAST of CmoCh04G018300 vs. NCBI nr
Match: gi|778705000|ref|XP_004135256.2| (PREDICTED: CRS2-associated factor 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 354.0 bits (907), Expect = 2.1e-94
Identity = 188/231 (81.39%), Postives = 200/231 (86.58%), Query Frame = 1


Query: 22  NLSPFA--AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLS 81
           NL P    AKNGVYISLVNDVRHAFEGSILVK+DCTGMHESDYKKLGAKLKELVPCVLLS
Sbjct: 327 NLLPICKLAKNGVYISLVNDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLS 386

Query: 82  FDNEQILMWRGKDWKSDISEDPSATLPSQARTND-----GESIENGDLLHGNHHTIKTSP 141
           FDNEQILMWRGKDWKS IS+D SA LPS+A +ND     GES+EN DLLHGNHHTIKTSP
Sbjct: 387 FDNEQILMWRGKDWKSIISDDRSAPLPSRASSNDSLGSPGESLENSDLLHGNHHTIKTSP 446

Query: 142 KMKLLWEKAIDSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSP 201
           KMKLLWE AIDSNKALLL+EIGLAPDDLLEKVEEFERISQATEHSYPA I SSE D SSP
Sbjct: 447 KMKLLWEHAIDSNKALLLDEIGLAPDDLLEKVEEFERISQATEHSYPAFITSSE-DVSSP 506

Query: 202 DDNLESQDRDESNYSSDDDEDREGDLFDIVNPTVPMGSLPVDIIAKKLRPE 246
           DD+ +SQD  E+NY+SDDD  RE DLFD  +P VP+GSLPVDIIAKKL  E
Sbjct: 507 DDSPKSQDHTEANYNSDDDVGREEDLFDNADPLVPLGSLPVDIIAKKLSSE 556

[Close]

BLAST of CmoCh04G018300 vs. NCBI nr
Match: gi|659090767|ref|XP_008446191.1| (PREDICTED: CRS2-associated factor 2, chloroplastic [Cucumis melo])

HSP 1 Score: 346.3 bits (887), Expect = 4.4e-92
Identity = 183/231 (79.22%), Postives = 201/231 (87.01%), Query Frame = 1


Query: 22  NLSPFA--AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLS 81
           NL P    AKNGVYISLV+DVRHAFEGSILVK+DCTGMHESDYKKLGAKLKELVPCVLLS
Sbjct: 382 NLLPICKLAKNGVYISLVDDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLS 441

Query: 82  FDNEQILMWRGKDWKSDISEDPSATLPSQARTND-----GESIENGDLLHGNHHTIKTSP 141
           FDNEQILMWRGKDWKS IS+D SA LPS+A +ND     GES+EN DLL+GNHHTIKTSP
Sbjct: 442 FDNEQILMWRGKDWKSVISDDRSAPLPSRASSNDSLGSSGESVENSDLLNGNHHTIKTSP 501

Query: 142 KMKLLWEKAIDSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSP 201
           KMKLLWE+AIDSNKAL+L+EIGLAPD+LLE+VEEFERISQATEHSYPA I SSE + SSP
Sbjct: 502 KMKLLWERAIDSNKALMLDEIGLAPDELLERVEEFERISQATEHSYPAFITSSE-EVSSP 561

Query: 202 DDNLESQDRDESNYSSDDDEDREGDLFDIVNPTVPMGSLPVDIIAKKLRPE 246
            D+ ESQD  E+NY+SDDD  RE DLFD V+P VP+GSLPVDIIAKKL  E
Sbjct: 562 ADSPESQDHSEANYNSDDDVGREEDLFDNVDPLVPLGSLPVDIIAKKLSSE 611

[Close]

BLAST of CmoCh04G018300 vs. NCBI nr
Match: gi|307135966|gb|ADN33825.1| (RNA splicing factor [Cucumis melo subsp. melo])

HSP 1 Score: 346.3 bits (887), Expect = 4.4e-92
Identity = 183/231 (79.22%), Postives = 201/231 (87.01%), Query Frame = 1


Query: 22  NLSPFA--AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLS 81
           NL P    AKNGVYISLV+DVRHAFEGSILVK+DCTGMHESDYKKLGAKLKELVPCVLLS
Sbjct: 374 NLLPICKLAKNGVYISLVDDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLS 433

Query: 82  FDNEQILMWRGKDWKSDISEDPSATLPSQARTND-----GESIENGDLLHGNHHTIKTSP 141
           FDNEQILMWRGKDWKS IS+D SA LPS+A +ND     GES+EN DLL+GNHHTIKTSP
Sbjct: 434 FDNEQILMWRGKDWKSVISDDRSAPLPSRASSNDSLGSSGESVENSDLLNGNHHTIKTSP 493

Query: 142 KMKLLWEKAIDSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSP 201
           KMKLLWE+AIDSNKAL+L+EIGLAPD+LLE+VEEFERISQATEHSYPA I SSE + SSP
Sbjct: 494 KMKLLWERAIDSNKALMLDEIGLAPDELLERVEEFERISQATEHSYPAFITSSE-EVSSP 553

Query: 202 DDNLESQDRDESNYSSDDDEDREGDLFDIVNPTVPMGSLPVDIIAKKLRPE 246
            D+ ESQD  E+NY+SDDD  RE DLFD V+P VP+GSLPVDIIAKKL  E
Sbjct: 554 ADSPESQDHSEANYNSDDDVGREEDLFDNVDPLVPLGSLPVDIIAKKLSSE 603

[Close]

BLAST of CmoCh04G018300 vs. NCBI nr
Match: gi|641863668|gb|KDO82354.1| (hypothetical protein CISIN_1g018444mg [Citrus sinensis])

HSP 1 Score: 235.3 bits (599), Expect = 1.1e-58
Identity = 132/225 (58.67%), Postives = 165/225 (73.33%), Query Frame = 1


Query: 27  AAKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQIL 86
           AAKNGVY++LV DVR+AFEGS LVKV+C GMH SDYKKLGAKLKELVPCVLLSFD+EQIL
Sbjct: 8   AAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQIL 67

Query: 87  MWRGKDWKSDISEDPSATLPSQ---ARTNDGESIENGDLLHGNHHTIKTSPKMKLLWEKA 146
           MWRGKDWKS   E PS + P     A   DG    + D   G   TI++SPKM  LW++A
Sbjct: 68  MWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQG---TIRSSPKMISLWKRA 127

Query: 147 IDSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSP----DDNLE 206
           I+S KAL+L+EI L PDDLL+KVEEFE ISQA EHSYPAL++S ED +SS     +D  +
Sbjct: 128 IESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQ 187

Query: 207 SQDRDESNYSSDDDEDREGDLFDI-VNPTVPMGSLPVDIIAKKLR 244
           S++ DE  +  +DD + + + +D   +  VP+GSLPVD IA++L+
Sbjct: 188 SENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQ 229

[Close]

BLAST of CmoCh04G018300 vs. NCBI nr
Match: gi|567891615|ref|XP_006438328.1| (hypothetical protein CICLE_v10031138mg [Citrus clementina])

HSP 1 Score: 233.4 bits (594), Expect = 4.2e-58
Identity = 131/224 (58.48%), Postives = 164/224 (73.21%), Query Frame = 1


Query: 28  AKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILM 87
           AKNGVY++LV DVR+AFEGS LVKV+C GMH SDYKKLGAKLKELVPCVLLSFD+EQILM
Sbjct: 330 AKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILM 389

Query: 88  WRGKDWKSDISEDPSATLPSQ---ARTNDGESIENGDLLHGNHHTIKTSPKMKLLWEKAI 147
           WRGKDWKS   E PS + P     A   DG    + D   G   TI++SPKM  LW++AI
Sbjct: 390 WRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDDPSQG---TIRSSPKMISLWKRAI 449

Query: 148 DSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSSP----DDNLES 207
           +S KAL+L+EI L PDDLL+KVEEFE ISQA EHSYPAL++S ED +SS     +D  +S
Sbjct: 450 ESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQS 509

Query: 208 QDRDESNYSSDDDEDREGDLFDI-VNPTVPMGSLPVDIIAKKLR 244
           ++ DE  +  +DD + + + +D   +  VP+GSLPVD IA++L+
Sbjct: 510 ENYDEDEFYPEDDFNDDDEFYDSDSSDVVPLGSLPVDHIAERLQ 550

The following BLAST results are available for this feature:

BLAST of CmoCh04G018300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CAF2P_ARATH	1.5e-52	52.25	CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana GN=At1g23400 PE=...	[more]
CAF2P_MAIZE	2.9e-43	43.75	CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1	[more]
CAF2P_ORYSJ	2.3e-40	42.15	CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g...	[more]
CAF1P_MAIZE	4.8e-22	66.67	CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1 SV=1	[more]
CAF1P_ARATH	1.8e-21	62.86	CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=...	[more]

BLAST of CmoCh04G018300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ61_CUCSA	1.5e-94	81.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G600920 PE=4 SV=1	[more]
E5GBI3_CUCME	3.1e-92	79.22	RNA splicing factor OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A067GRV5_CITSI	7.7e-59	58.67	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018444mg PE=4 SV=1	[more]
V4SUL4_9ROSI	2.9e-58	58.48	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031138mg PE=4 SV=1	[more]
A0A067GRK8_CITSI	2.9e-58	58.48	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018444mg PE=4 SV=1	[more]

BLAST of CmoCh04G018300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23400.1	8.7e-54	52.25	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	[more]
AT2G20020.1	1.0e-22	62.86	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	[more]
AT4G31010.1	6.3e-20	57.53	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	[more]
AT5G54890.1	4.7e-15	52.38	RNA-binding CRS1 / YhbY (CRM) domain-containing protein	[more]

BLAST of CmoCh04G018300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778705000\|ref\|XP_004135256.2\|	2.1e-94	81.39	PREDICTED: CRS2-associated factor 2, chloroplastic [Cucumis sativus]	[more]
gi\|659090767\|ref\|XP_008446191.1\|	4.4e-92	79.22	PREDICTED: CRS2-associated factor 2, chloroplastic [Cucumis melo]	[more]
gi\|307135966\|gb\|ADN33825.1\|	4.4e-92	79.22	RNA splicing factor [Cucumis melo subsp. melo]	[more]
gi\|641863668\|gb\|KDO82354.1\|	1.1e-58	58.67	hypothetical protein CISIN_1g018444mg [Citrus sinensis]	[more]
gi\|567891615\|ref\|XP_006438328.1\|	4.2e-58	58.48	hypothetical protein CICLE_v10031138mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001890	RNA-binding_CRM

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G018300.1	CmoCh04G018300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	GENE3D	G3DSA:3.30.110.60		coord: 28..95 score: 1.8
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 29..89 score: 1.
IPR001890	RNA-binding, CRM domain	PROFILE	PS51295	CRM	coord: 4..100 score: 11
IPR001890	RNA-binding, CRM domain	unknown	SSF75471	YhbY-like	coord: 24..95 score: 5.23
None	No IPR available	PANTHER	PTHR31846	FAMILY NOT NAMED	coord: 28..222 score: 4.6
None	No IPR available	PANTHER	PTHR31846:SF5	CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC	coord: 28..222 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G018300	Cucumber (Chinese Long) v3	cmocucB0808
CmoCh04G018300	Cucumber (Chinese Long) v3	cmocucB0875
CmoCh04G018300	Watermelon (97103) v2	cmowmbB730
CmoCh04G018300	Watermelon (97103) v2	cmowmbB763
CmoCh04G018300	Wax gourd	cmowgoB0861
CmoCh04G018300	Wax gourd	cmowgoB0890
CmoCh04G018300	Cucurbita moschata (Rifu)	cmocmoB341
CmoCh04G018300	Cucurbita moschata (Rifu)	cmocmoB472
CmoCh04G018300	Cucumber (Gy14) v1	cgycmoB0794
CmoCh04G018300	Cucumber (Gy14) v1	cgycmoB1092
CmoCh04G018300	Cucurbita maxima (Rimu)	cmacmoB189
CmoCh04G018300	Cucurbita maxima (Rimu)	cmacmoB422
CmoCh04G018300	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G018300	Cucurbita maxima (Rimu)	cmacmoB785
CmoCh04G018300	Wild cucumber (PI 183967)	cmocpiB693
CmoCh04G018300	Wild cucumber (PI 183967)	cmocpiB748
CmoCh04G018300	Cucumber (Chinese Long) v2	cmocuB682
CmoCh04G018300	Cucumber (Chinese Long) v2	cmocuB739
CmoCh04G018300	Melon (DHL92) v3.5.1	cmomeB632
CmoCh04G018300	Melon (DHL92) v3.5.1	cmomeB673
CmoCh04G018300	Watermelon (Charleston Gray)	cmowcgB655
CmoCh04G018300	Watermelon (Charleston Gray)	cmowcgB683
CmoCh04G018300	Watermelon (97103) v1	cmowmB694
CmoCh04G018300	Cucurbita pepo (Zucchini)	cmocpeB646
CmoCh04G018300	Cucurbita pepo (Zucchini)	cmocpeB656
CmoCh04G018300	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G018300	Bottle gourd (USVL1VR-Ls)	cmolsiB661
CmoCh04G018300	Bottle gourd (USVL1VR-Ls)	cmolsiB698
CmoCh04G018300	Cucumber (Gy14) v2	cgybcmoB232
CmoCh04G018300	Cucumber (Gy14) v2	cgybcmoB653
CmoCh04G018300	Melon (DHL92) v3.6.1	cmomedB721
CmoCh04G018300	Melon (DHL92) v3.6.1	cmomedB761
CmoCh04G018300	Silver-seed gourd	carcmoB0343
CmoCh04G018300	Silver-seed gourd	carcmoB0685
CmoCh04G018300	Silver-seed gourd	carcmoB0985