CmoCh04G016830 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G016830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, Ty3-gypsy subclass, putative
Location	Cmo_Chr04 : 8538124 .. 8539116 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCACTTCATCCCAGGCAAAACCACTTATCGTGTGGATCGGTGGGCTCAGCTGTATATCAGAGAAATAGTACGCTTGCATGGTGTACCGGTGTCTATAGTGTCTGATCGGGACACTAGATTCACCTCTCAGTTCTGGAAAAGCCTCCAAAAAGCATTGGGGACTCAGTTAAGGTTTAGTACAGCATTCCATCCTCAGACGGACGGACAGACTGAAAGATTGAATCAAATTTTGGAAGATATGTTGCGAGCTTGTGTCTTGGATTTCGCTGGGTGCTGGGATGAACATCTACCTCTGATAGAGTTTGCTTATAATAATAGCTATCAAGCGACCATCCAGATGGCCCCTTTTGAGGCGATGTATGGGCGTAGGTGTCGAACACCAGTATTTTGGGAAGAAGTAGGCACGCAGCAGCTACTGGGACCGGAGTTAGTTCAGGTCACCAACGCGGCAGTGCAGAAAATTAAGCAAAGAATCCTCACTGCACAAAGCCGGCAGAAGAGCTATGCAGATTTGCGTAGAAGGGACCTCGAGTTCGAGGTGGGTGGCCATGTGTTCGTGAAGGTAGCCCCTATGAGAGGGGTGATGAGGTTTGGAAAGAAAGGGAAGTTAAGCCCAAGGTTTGTAGGCCCTTTCGAGATTCTAGAGAGAGTTGGGGCCGTGGCGTATAAGATTGCTCTACCACCAAACCTTGCCGCCGTTCACAACGTGTTCCACGTATCTATGCTGCGAAAGTACACCTCAGACCCTACTCACGTGATTGAACACGAAACCCTCCCTCTTCGGGAAGATTTGTCCTACGAGGTAAGACCCAGCAAAATTCTGGCTCGAGACACTAGGCGTCTGCGCAACAAAGTTATTCCCTTGGTAAAAGTCGCATGGGGTAACCATCGACACGAGGAGGCAACCTGGGAACGAGAAGAAGACGTAAGGAGAACCTATCCCGAACTCTTCCAAGGGATACCAACTTTCGGGGACGAAAGTTTTTAA

mRNA sequence

ATGGCTCACTTCATCCCAGGCAAAACCACTTATCGTGTGGATCGGTGGGCTCAGCTGTATATCAGAGAAATAGTACGCTTGCATGGTGTACCGGTGTCTATAGTGTCTGATCGGGACACTAGATTCACCTCTCAGTTCTGGAAAAGCCTCCAAAAAGCATTGGGGACTCAGTTAAGGTTTAGTACAGCATTCCATCCTCAGACGGACGGACAGACTGAAAGATTGAATCAAATTTTGGAAGATATGTTGCGAGCTTGTGTCTTGGATTTCGCTGGGTGCTGGGATGAACATCTACCTCTGATAGAGTTTGCTTATAATAATAGCTATCAAGCGACCATCCAGATGGCCCCTTTTGAGGCGATGTATGGGCGTAGGTGTCGAACACCAGTATTTTGGGAAGAAGTAGGCACGCAGCAGCTACTGGGACCGGAGTTAGTTCAGGTCACCAACGCGGCAGTGCAGAAAATTAAGCAAAGAATCCTCACTGCACAAAGCCGGCAGAAGAGCTATGCAGATTTGCGTAGAAGGGACCTCGAGTTCGAGGTGGGTGGCCATGTGTTCGTGAAGGTAGCCCCTATGAGAGGGGTGATGAGGTTTGGAAAGAAAGGGAAGTTAAGCCCAAGGTTTGTAGGCCCTTTCGAGATTCTAGAGAGAGTTGGGGCCGTGGCGTATAAGATTGCTCTACCACCAAACCTTGCCGCCGTTCACAACGTGTTCCACGTATCTATGCTGCGAAAGTACACCTCAGACCCTACTCACGTGATTGAACACGAAACCCTCCCTCTTCGGGAAGATTTGTCCTACGAGGTAAGACCCAGCAAAATTCTGGCTCGAGACACTAGGCGTCTGCGCAACAAAGTTATTCCCTTGGTAAAAGTCGCATGGGGTAACCATCGACACGAGGAGGCAACCTGGGAACGAGAAGAAGACGTAAGGAGAACCTATCCCGAACTCTTCCAAGGGATACCAACTTTCGGGGACGAAAGTTTTTAA

Coding sequence (CDS)

ATGGCTCACTTCATCCCAGGCAAAACCACTTATCGTGTGGATCGGTGGGCTCAGCTGTATATCAGAGAAATAGTACGCTTGCATGGTGTACCGGTGTCTATAGTGTCTGATCGGGACACTAGATTCACCTCTCAGTTCTGGAAAAGCCTCCAAAAAGCATTGGGGACTCAGTTAAGGTTTAGTACAGCATTCCATCCTCAGACGGACGGACAGACTGAAAGATTGAATCAAATTTTGGAAGATATGTTGCGAGCTTGTGTCTTGGATTTCGCTGGGTGCTGGGATGAACATCTACCTCTGATAGAGTTTGCTTATAATAATAGCTATCAAGCGACCATCCAGATGGCCCCTTTTGAGGCGATGTATGGGCGTAGGTGTCGAACACCAGTATTTTGGGAAGAAGTAGGCACGCAGCAGCTACTGGGACCGGAGTTAGTTCAGGTCACCAACGCGGCAGTGCAGAAAATTAAGCAAAGAATCCTCACTGCACAAAGCCGGCAGAAGAGCTATGCAGATTTGCGTAGAAGGGACCTCGAGTTCGAGGTGGGTGGCCATGTGTTCGTGAAGGTAGCCCCTATGAGAGGGGTGATGAGGTTTGGAAAGAAAGGGAAGTTAAGCCCAAGGTTTGTAGGCCCTTTCGAGATTCTAGAGAGAGTTGGGGCCGTGGCGTATAAGATTGCTCTACCACCAAACCTTGCCGCCGTTCACAACGTGTTCCACGTATCTATGCTGCGAAAGTACACCTCAGACCCTACTCACGTGATTGAACACGAAACCCTCCCTCTTCGGGAAGATTTGTCCTACGAGGTAAGACCCAGCAAAATTCTGGCTCGAGACACTAGGCGTCTGCGCAACAAAGTTATTCCCTTGGTAAAAGTCGCATGGGGTAACCATCGACACGAGGAGGCAACCTGGGAACGAGAAGAAGACGTAAGGAGAACCTATCCCGAACTCTTCCAAGGGATACCAACTTTCGGGGACGAAAGTTTTTAA

Homology

[Close]

BLAST of CmoCh04G016830 vs. Swiss-Prot
Match: TF29_SCHPO (Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-30
Identity = 88/285 (30.88%), Postives = 143/285 (50.18%), Query Frame = 1


Query: 1    MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRF 60
            MA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ WK         ++F
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 61   STAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEA 120
            S  + PQTDGQTER NQ +E +LR         W +H+ L++ +YNN+  +  QM PFE 
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 121  MYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-E 180
            ++  R    +   E+ +      E  Q T    Q +K+ + T   + K Y D++ +++ E
Sbjct: 1134 VH--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEE 1193

Query: 181  FEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNV 240
            F+ G  V VK     G +   K  KL+P F GPF +L++ G   Y++ LP ++  +  + 
Sbjct: 1194 FQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSST 1253

Query: 241  FHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY 269
            FHVS L KY         T D +      H++EH+    RE + Y
Sbjct: 1254 FHVSHLEKYRHNSELNYATIDESDIGTILHILEHKN---REQVLY 1290

[Close]

BLAST of CmoCh04G016830 vs. Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-30
Identity = 88/285 (30.88%), Postives = 143/285 (50.18%), Query Frame = 1


Query: 1    MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRF 60
            MA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ WK         ++F
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 61   STAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEA 120
            S  + PQTDGQTER NQ +E +LR         W +H+ L++ +YNN+  +  QM PFE 
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 121  MYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-E 180
            ++  R    +   E+ +      E  Q T    Q +K+ + T   + K Y D++ +++ E
Sbjct: 1134 VH--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEE 1193

Query: 181  FEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNV 240
            F+ G  V VK     G +   K  KL+P F GPF +L++ G   Y++ LP ++  +  + 
Sbjct: 1194 FQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSST 1253

Query: 241  FHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY 269
            FHVS L KY         T D +      H++EH+    RE + Y
Sbjct: 1254 FHVSHLEKYRHNSELNYATIDESDIGTILHILEHKN---REQVLY 1290

[Close]

BLAST of CmoCh04G016830 vs. Swiss-Prot
Match: TF25_SCHPO (Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-30
Identity = 88/285 (30.88%), Postives = 143/285 (50.18%), Query Frame = 1


Query: 1    MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRF 60
            MA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ WK         ++F
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 61   STAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEA 120
            S  + PQTDGQTER NQ +E +LR         W +H+ L++ +YNN+  +  QM PFE 
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 121  MYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-E 180
            ++  R    +   E+ +      E  Q T    Q +K+ + T   + K Y D++ +++ E
Sbjct: 1134 VH--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEE 1193

Query: 181  FEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNV 240
            F+ G  V VK     G +   K  KL+P F GPF +L++ G   Y++ LP ++  +  + 
Sbjct: 1194 FQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSST 1253

Query: 241  FHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY 269
            FHVS L KY         T D +      H++EH+    RE + Y
Sbjct: 1254 FHVSHLEKYRHNSELNYATIDESDIGTILHILEHKN---REQVLY 1290

[Close]

BLAST of CmoCh04G016830 vs. Swiss-Prot
Match: TF24_SCHPO (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-30
Identity = 88/285 (30.88%), Postives = 143/285 (50.18%), Query Frame = 1


Query: 1    MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRF 60
            MA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ WK         ++F
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 61   STAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEA 120
            S  + PQTDGQTER NQ +E +LR         W +H+ L++ +YNN+  +  QM PFE 
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 121  MYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-E 180
            ++  R    +   E+ +      E  Q T    Q +K+ + T   + K Y D++ +++ E
Sbjct: 1134 VH--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEE 1193

Query: 181  FEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNV 240
            F+ G  V VK     G +   K  KL+P F GPF +L++ G   Y++ LP ++  +  + 
Sbjct: 1194 FQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSST 1253

Query: 241  FHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY 269
            FHVS L KY         T D +      H++EH+    RE + Y
Sbjct: 1254 FHVSHLEKYRHNSELNYATIDESDIGTILHILEHKN---REQVLY 1290

[Close]

BLAST of CmoCh04G016830 vs. Swiss-Prot
Match: TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-30
Identity = 88/285 (30.88%), Postives = 143/285 (50.18%), Query Frame = 1


Query: 1    MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRF 60
            MA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ WK         ++F
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 61   STAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEA 120
            S  + PQTDGQTER NQ +E +LR         W +H+ L++ +YNN+  +  QM PFE 
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133

Query: 121  MYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-E 180
            ++  R    +   E+ +      E  Q T    Q +K+ + T   + K Y D++ +++ E
Sbjct: 1134 VH--RYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEE 1193

Query: 181  FEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNV 240
            F+ G  V VK     G +   K  KL+P F GPF +L++ G   Y++ LP ++  +  + 
Sbjct: 1194 FQPGDLVMVK-RTKTGFLH--KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSST 1253

Query: 241  FHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY 269
            FHVS L KY         T D +      H++EH+    RE + Y
Sbjct: 1254 FHVSHLEKYRHNSELNYATIDESDIGTILHILEHKN---REQVLY 1290

[Close]

BLAST of CmoCh04G016830 vs. TrEMBL
Match: Q84KB0_CUCME (Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 7.2e-137
Identity = 232/318 (72.96%), Postives = 274/318 (86.16%), Query Frame = 1


Query: 2   AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFS 61
           AHF+PGK+TY   +WAQLY+ EIVRLHGVPVSIVSDRD RFTS+FWK LQ A+GT+L FS
Sbjct: 604 AHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFS 663

Query: 62  TAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEAM 121
           TAFHPQTDGQTERLNQ+LEDMLRAC L+F G WD HL L+EFAYNNSYQATI MAPFEA+
Sbjct: 664 TAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEAL 723

Query: 122 YGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFE 181
           YGR CR+PV W EVG Q+L+GPELVQ TN A+QKI+ R+ TAQSRQKSYAD+RR+DLEFE
Sbjct: 724 YGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE 783

Query: 182 VGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHV 241
           VG  VF+KVAPM+GV+RF ++GKLSPRFVGPFEILER+G VAY++ALPP+L+ VH+VFHV
Sbjct: 784 VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHV 843

Query: 242 SMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE 301
           SMLRKY  DP+HV+++E L + E+LSY  +P ++LAR  + LRNK IPLVKV W NHR E
Sbjct: 844 SMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARGVKTLRNKQIPLVKVLWRNHRVE 903

Query: 302 EATWEREEDVRRTYPELF 320
           EATWERE+D+R  YPELF
Sbjct: 904 EATWEREDDMRSRYPELF 921

[Close]

BLAST of CmoCh04G016830 vs. TrEMBL
Match: A5BA10_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009489 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.3e-122
Identity = 210/319 (65.83%), Postives = 261/319 (81.82%), Query Frame = 1


Query: 2   AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFS 61
           AHF+P K  + +DR A LY++EIVR+HGVPVSIVSDRD RFTS+FW SLQK+LGT+L FS
Sbjct: 657 AHFLPMKVNFSLDRLASLYVKEIVRMHGVPVSIVSDRDPRFTSRFWHSLQKSLGTKLSFS 716

Query: 62  TAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEAM 121
           TAFHPQTDGQ+ER+ Q+LED+ RAC+LD  G WD+HLPL+EFAYNNS+QA+I MAPFEA+
Sbjct: 717 TAFHPQTDGQSERVIQVLEDLFRACILDLQGNWDDHLPLVEFAYNNSFQASIGMAPFEAL 776

Query: 122 YGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFE 181
           YGR+CR+P+ W +VG ++LLGPELVQ+T   V  IK+R+  AQSR KSY D RRRDLEFE
Sbjct: 777 YGRKCRSPICWNDVGERKLLGPELVQLTVEKVALIKERLKAAQSRHKSYVDHRRRDLEFE 836

Query: 182 VGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHV 241
           VG HVF+KV+PM+ VMRFG+KGKLSPRFVG FEILERVG +AYK+ALPP+L+ VHNVFHV
Sbjct: 837 VGDHVFLKVSPMKSVMRFGRKGKLSPRFVGLFEILERVGTLAYKVALPPSLSKVHNVFHV 896

Query: 242 SMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE 301
           S LRKY  DP+HV++ E + + EDL+YE  P +I+    + LR+ V+ LVKV W NH   
Sbjct: 897 STLRKYIYDPSHVVDLEPIQIFEDLTYEEVPVQIVDMMDKVLRHAVVKLVKVQWSNHSIR 956

Query: 302 EATWEREEDVRRTYPELFQ 321
           EATWE EE++R  +P+LFQ
Sbjct: 957 EATWELEEEMREKHPQLFQ 975

[Close]

BLAST of CmoCh04G016830 vs. TrEMBL
Match: A0A061EEG7_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 5.0e-122
Identity = 207/318 (65.09%), Postives = 262/318 (82.39%), Query Frame = 1


Query: 2    AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFS 61
            AHF+P KTTY   ++A++Y+ EIVRLHG+P+SIVSDR  +FTS+FW  LQ+ALGT+L FS
Sbjct: 1128 AHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFS 1187

Query: 62   TAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEAM 121
            TAFHPQTDGQ+ER  Q LE MLRACV+D    W+++LPL+EFAYNNS+Q +IQMAPFEA+
Sbjct: 1188 TAFHPQTDGQSERTIQTLEAMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEAL 1247

Query: 122  YGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFE 181
            YGRRCR+P+ W EVG ++LLGPELVQ     +  I+QR+LTAQSRQKSYAD RRRDLEF+
Sbjct: 1248 YGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQ 1307

Query: 182  VGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHV 241
            VG HVF+KV+P +GVMRFGKKGKLSPR++GPFEILE+VGAVAY++ALPP+L+ +H VFHV
Sbjct: 1308 VGDHVFLKVSPTKGVMRFGKKGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHV 1367

Query: 242  SMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE 301
            SMLRKY  DP+HVI +ET+ L++DL+YE +P  IL R  ++LR+K +  VKV W NH  E
Sbjct: 1368 SMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSE 1427

Query: 302  EATWEREEDVRRTYPELF 320
            E TWE E+++R  +P LF
Sbjct: 1428 EVTWEAEDEMRTKHPHLF 1445

[Close]

BLAST of CmoCh04G016830 vs. TrEMBL
Match: A0A061GA43_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028107 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 5.0e-122
Identity = 207/318 (65.09%), Postives = 261/318 (82.08%), Query Frame = 1


Query: 2   AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFS 61
           AHF+P KTTY    +A++Y+ EIVRLHG+P+SIVSDR  +FTS+FW  LQ+ALGT+L FS
Sbjct: 360 AHFLPVKTTYGAAHYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFS 419

Query: 62  TAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEAM 121
           TAFHPQTDGQ+ER  Q LEDMLRACV+D    W+++LPL+EFAYNNS+Q +IQMAPFEA+
Sbjct: 420 TAFHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEAL 479

Query: 122 YGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFE 181
           YGRRCR+P+ W EVG ++LLGPELVQ     +  I+QR+LTAQSRQKSYAD RRRDLEF+
Sbjct: 480 YGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQ 539

Query: 182 VGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHV 241
           VG HVF+K +P +GVMRFGKKGKLSPR++GPF+ILE+VGAVAY++ALPP+L+ +H VFHV
Sbjct: 540 VGDHVFLKFSPTKGVMRFGKKGKLSPRYIGPFKILEKVGAVAYRLALPPDLSNIHPVFHV 599

Query: 242 SMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE 301
           SMLRKY  DP+HVI +ET+ L++DLSYE +P  IL R  ++LR+K +  VKV W NH  E
Sbjct: 600 SMLRKYNLDPSHVIRYETIQLQDDLSYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSE 659

Query: 302 EATWEREEDVRRTYPELF 320
           E TWE E+++R  +P LF
Sbjct: 660 EVTWEAEDEMRTKHPHLF 677

[Close]

BLAST of CmoCh04G016830 vs. TrEMBL
Match: A0A061FXC6_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013764 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 8.6e-122
Identity = 206/318 (64.78%), Postives = 262/318 (82.39%), Query Frame = 1


Query: 2   AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFS 61
           AHF+P KTTY   ++A++Y+ EIVRLHG+P+SIVSDR  +FTS+FW  LQ+ALGT+L FS
Sbjct: 129 AHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFS 188

Query: 62  TAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEAM 121
           TAFHPQTDGQ+ER  Q LEDMLRACV+D    W+++LPL+EFAYNNS+Q +IQMAPFEA+
Sbjct: 189 TAFHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEAL 248

Query: 122 YGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFE 181
           YGRRCR+P+ W EVG ++LLGPELVQ     +  I+QR+LTAQSRQKSYAD RRR LEF+
Sbjct: 249 YGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRYLEFQ 308

Query: 182 VGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHV 241
           VG HVF+KV+P +G+MRFGKKGKLSPR++GPFEILE+VGAVAY++ALPP+L+ +H VFHV
Sbjct: 309 VGDHVFLKVSPTKGIMRFGKKGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHV 368

Query: 242 SMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE 301
           SMLRKY  DP+HVI +ET+ L++DL+YE +P  IL R  ++LR+K +  VKV W NH  E
Sbjct: 369 SMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSE 428

Query: 302 EATWEREEDVRRTYPELF 320
           E TWE E+++R  +P LF
Sbjct: 429 EVTWEAEDEMRTKHPHLF 446

[Close]

BLAST of CmoCh04G016830 vs. NCBI nr
Match: gi|28558781|gb|AAO45752.1| (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 495.0 bits (1273), Expect = 1.0e-136
Identity = 232/318 (72.96%), Postives = 274/318 (86.16%), Query Frame = 1


Query: 2   AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFS 61
           AHF+PGK+TY   +WAQLY+ EIVRLHGVPVSIVSDRD RFTS+FWK LQ A+GT+L FS
Sbjct: 604 AHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFS 663

Query: 62  TAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEAM 121
           TAFHPQTDGQTERLNQ+LEDMLRAC L+F G WD HL L+EFAYNNSYQATI MAPFEA+
Sbjct: 664 TAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEAL 723

Query: 122 YGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFE 181
           YGR CR+PV W EVG Q+L+GPELVQ TN A+QKI+ R+ TAQSRQKSYAD+RR+DLEFE
Sbjct: 724 YGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE 783

Query: 182 VGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHV 241
           VG  VF+KVAPM+GV+RF ++GKLSPRFVGPFEILER+G VAY++ALPP+L+ VH+VFHV
Sbjct: 784 VGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHV 843

Query: 242 SMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE 301
           SMLRKY  DP+HV+++E L + E+LSY  +P ++LAR  + LRNK IPLVKV W NHR E
Sbjct: 844 SMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARGVKTLRNKQIPLVKVLWRNHRVE 903

Query: 302 EATWEREEDVRRTYPELF 320
           EATWERE+D+R  YPELF
Sbjct: 904 EATWEREDDMRSRYPELF 921

[Close]

BLAST of CmoCh04G016830 vs. NCBI nr
Match: gi|147769978|emb|CAN61139.1| (hypothetical protein VITISV_009489 [Vitis vinifera])

HSP 1 Score: 447.6 bits (1150), Expect = 1.9e-122
Identity = 210/319 (65.83%), Postives = 261/319 (81.82%), Query Frame = 1


Query: 2   AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFS 61
           AHF+P K  + +DR A LY++EIVR+HGVPVSIVSDRD RFTS+FW SLQK+LGT+L FS
Sbjct: 657 AHFLPMKVNFSLDRLASLYVKEIVRMHGVPVSIVSDRDPRFTSRFWHSLQKSLGTKLSFS 716

Query: 62  TAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEAM 121
           TAFHPQTDGQ+ER+ Q+LED+ RAC+LD  G WD+HLPL+EFAYNNS+QA+I MAPFEA+
Sbjct: 717 TAFHPQTDGQSERVIQVLEDLFRACILDLQGNWDDHLPLVEFAYNNSFQASIGMAPFEAL 776

Query: 122 YGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFE 181
           YGR+CR+P+ W +VG ++LLGPELVQ+T   V  IK+R+  AQSR KSY D RRRDLEFE
Sbjct: 777 YGRKCRSPICWNDVGERKLLGPELVQLTVEKVALIKERLKAAQSRHKSYVDHRRRDLEFE 836

Query: 182 VGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHV 241
           VG HVF+KV+PM+ VMRFG+KGKLSPRFVG FEILERVG +AYK+ALPP+L+ VHNVFHV
Sbjct: 837 VGDHVFLKVSPMKSVMRFGRKGKLSPRFVGLFEILERVGTLAYKVALPPSLSKVHNVFHV 896

Query: 242 SMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE 301
           S LRKY  DP+HV++ E + + EDL+YE  P +I+    + LR+ V+ LVKV W NH   
Sbjct: 897 STLRKYIYDPSHVVDLEPIQIFEDLTYEEVPVQIVDMMDKVLRHAVVKLVKVQWSNHSIR 956

Query: 302 EATWEREEDVRRTYPELFQ 321
           EATWE EE++R  +P+LFQ
Sbjct: 957 EATWELEEEMREKHPQLFQ 975

[Close]

BLAST of CmoCh04G016830 vs. NCBI nr
Match: gi|590617570|ref|XP_007023829.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 445.7 bits (1145), Expect = 7.2e-122
Identity = 207/318 (65.09%), Postives = 261/318 (82.08%), Query Frame = 1


Query: 2   AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFS 61
           AHF+P KTTY    +A++Y+ EIVRLHG+P+SIVSDR  +FTS+FW  LQ+ALGT+L FS
Sbjct: 360 AHFLPVKTTYGAAHYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFS 419

Query: 62  TAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEAM 121
           TAFHPQTDGQ+ER  Q LEDMLRACV+D    W+++LPL+EFAYNNS+Q +IQMAPFEA+
Sbjct: 420 TAFHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEAL 479

Query: 122 YGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFE 181
           YGRRCR+P+ W EVG ++LLGPELVQ     +  I+QR+LTAQSRQKSYAD RRRDLEF+
Sbjct: 480 YGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQ 539

Query: 182 VGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHV 241
           VG HVF+K +P +GVMRFGKKGKLSPR++GPF+ILE+VGAVAY++ALPP+L+ +H VFHV
Sbjct: 540 VGDHVFLKFSPTKGVMRFGKKGKLSPRYIGPFKILEKVGAVAYRLALPPDLSNIHPVFHV 599

Query: 242 SMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE 301
           SMLRKY  DP+HVI +ET+ L++DLSYE +P  IL R  ++LR+K +  VKV W NH  E
Sbjct: 600 SMLRKYNLDPSHVIRYETIQLQDDLSYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSE 659

Query: 302 EATWEREEDVRRTYPELF 320
           E TWE E+++R  +P LF
Sbjct: 660 EVTWEAEDEMRTKHPHLF 677

[Close]

BLAST of CmoCh04G016830 vs. NCBI nr
Match: gi|590649404|ref|XP_007032400.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 445.7 bits (1145), Expect = 7.2e-122
Identity = 207/318 (65.09%), Postives = 262/318 (82.39%), Query Frame = 1


Query: 2    AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFS 61
            AHF+P KTTY   ++A++Y+ EIVRLHG+P+SIVSDR  +FTS+FW  LQ+ALGT+L FS
Sbjct: 1128 AHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFS 1187

Query: 62   TAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEAM 121
            TAFHPQTDGQ+ER  Q LE MLRACV+D    W+++LPL+EFAYNNS+Q +IQMAPFEA+
Sbjct: 1188 TAFHPQTDGQSERTIQTLEAMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEAL 1247

Query: 122  YGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFE 181
            YGRRCR+P+ W EVG ++LLGPELVQ     +  I+QR+LTAQSRQKSYAD RRRDLEF+
Sbjct: 1248 YGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQ 1307

Query: 182  VGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHV 241
            VG HVF+KV+P +GVMRFGKKGKLSPR++GPFEILE+VGAVAY++ALPP+L+ +H VFHV
Sbjct: 1308 VGDHVFLKVSPTKGVMRFGKKGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHV 1367

Query: 242  SMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE 301
            SMLRKY  DP+HVI +ET+ L++DL+YE +P  IL R  ++LR+K +  VKV W NH  E
Sbjct: 1368 SMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSE 1427

Query: 302  EATWEREEDVRRTYPELF 320
            E TWE E+++R  +P LF
Sbjct: 1428 EVTWEAEDEMRTKHPHLF 1445

[Close]

BLAST of CmoCh04G016830 vs. NCBI nr
Match: gi|590667202|ref|XP_007037177.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 444.9 bits (1143), Expect = 1.2e-121
Identity = 206/318 (64.78%), Postives = 262/318 (82.39%), Query Frame = 1


Query: 2   AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFS 61
           AHF+P KTTY   ++A++Y+ EIVRLHG+P+SIVSDR  +FTS+FW  LQ+ALGT+L FS
Sbjct: 129 AHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFS 188

Query: 62  TAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQATIQMAPFEAM 121
           TAFHPQTDGQ+ER  Q LEDMLRACV+D    W+++LPL+EFAYNNS+Q +IQMAPFEA+
Sbjct: 189 TAFHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEAL 248

Query: 122 YGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFE 181
           YGRRCR+P+ W EVG ++LLGPELVQ     +  I+QR+LTAQSRQKSYAD RRR LEF+
Sbjct: 249 YGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRYLEFQ 308

Query: 182 VGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHV 241
           VG HVF+KV+P +G+MRFGKKGKLSPR++GPFEILE+VGAVAY++ALPP+L+ +H VFHV
Sbjct: 309 VGDHVFLKVSPTKGIMRFGKKGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHV 368

Query: 242 SMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE 301
           SMLRKY  DP+HVI +ET+ L++DL+YE +P  IL R  ++LR+K +  VKV W NH  E
Sbjct: 369 SMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSE 428

Query: 302 EATWEREEDVRRTYPELF 320
           E TWE E+++R  +P LF
Sbjct: 429 EVTWEAEDEMRTKHPHLF 446

The following BLAST results are available for this feature:

BLAST of CmoCh04G016830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TF29_SCHPO	1.3e-30	30.88	Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF26_SCHPO	1.3e-30	30.88	Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF25_SCHPO	1.3e-30	30.88	Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF24_SCHPO	1.3e-30	30.88	Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF23_SCHPO	1.3e-30	30.88	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh04G016830 vs. TrEMBL


Match Name	E-value	Identity	Description
Q84KB0_CUCME	7.2e-137	72.96	Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A5BA10_VITVI	1.3e-122	65.83	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009489 PE=4 SV=1	[more]
A0A061EEG7_THECC	5.0e-122	65.09	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV...	[more]
A0A061GA43_THECC	5.0e-122	65.09	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028107 PE=4 SV...	[more]
A0A061FXC6_THECC	8.6e-122	64.78	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_013764 PE=4 SV...	[more]

BLAST of CmoCh04G016830 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G016830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|28558781\|gb\|AAO45752.1\|	1.0e-136	72.96	pol protein [Cucumis melo subsp. melo]	[more]
gi\|147769978\|emb\|CAN61139.1\|	1.9e-122	65.83	hypothetical protein VITISV_009489 [Vitis vinifera]	[more]
gi\|590617570\|ref\|XP_007023829.1\|	7.2e-122	65.09	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590649404\|ref\|XP_007032400.1\|	7.2e-122	65.09	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590667202\|ref\|XP_007037177.1\|	1.2e-121	64.78	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf
IPR016197	Chromo-like_dom_sf
IPR023780	Chromo_domain

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G016830.1	CmoCh04G016830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 14..82 score: 4.
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 1..125 score: 14
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 17..129 score: 2.0
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 2..119 score: 1.35
IPR016197	Chromo domain-like	unknown	SSF54160	Chromo domain-like	coord: 234..314 score: 6.0
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 272..320 score: 9.
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..319 score: 1.5E
None	No IPR available	PANTHER	PTHR24559:SF207	SUBFAMILY NOT NAMED	coord: 1..319 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G016830	Cucumber (Chinese Long) v3	cmocucB0798
CmoCh04G016830	Cucumber (Chinese Long) v3	cmocucB0807
CmoCh04G016830	Cucumber (Chinese Long) v3	cmocucB0847
CmoCh04G016830	Watermelon (97103) v2	cmowmbB734
CmoCh04G016830	Watermelon (97103) v2	cmowmbB746
CmoCh04G016830	Wax gourd	cmowgoB0903
CmoCh04G016830	Cucurbita moschata (Rifu)	cmocmoB124
CmoCh04G016830	Cucurbita moschata (Rifu)	cmocmoB465
CmoCh04G016830	Cucumber (Gy14) v1	cgycmoB0591
CmoCh04G016830	Cucumber (Gy14) v1	cgycmoB0797
CmoCh04G016830	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G016830	Cucurbita maxima (Rimu)	cmacmoB733
CmoCh04G016830	Wild cucumber (PI 183967)	cmocpiB687
CmoCh04G016830	Wild cucumber (PI 183967)	cmocpiB689
CmoCh04G016830	Wild cucumber (PI 183967)	cmocpiB723
CmoCh04G016830	Cucumber (Chinese Long) v2	cmocuB673
CmoCh04G016830	Cucumber (Chinese Long) v2	cmocuB676
CmoCh04G016830	Cucumber (Chinese Long) v2	cmocuB715
CmoCh04G016830	Melon (DHL92) v3.5.1	cmomeB645
CmoCh04G016830	Melon (DHL92) v3.5.1	cmomeB659
CmoCh04G016830	Melon (DHL92) v3.5.1	cmomeB666
CmoCh04G016830	Watermelon (Charleston Gray)	cmowcgB659
CmoCh04G016830	Watermelon (Charleston Gray)	cmowcgB669
CmoCh04G016830	Watermelon (97103) v1	cmowmB698
CmoCh04G016830	Watermelon (97103) v1	cmowmB713
CmoCh04G016830	Watermelon (97103) v1	cmowmB741
CmoCh04G016830	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G016830	Cucurbita pepo (Zucchini)	cmocpeB676
CmoCh04G016830	Bottle gourd (USVL1VR-Ls)	cmolsiB644
CmoCh04G016830	Bottle gourd (USVL1VR-Ls)	cmolsiB671
CmoCh04G016830	Bottle gourd (USVL1VR-Ls)	cmolsiB687
CmoCh04G016830	Cucumber (Gy14) v2	cgybcmoB119
CmoCh04G016830	Cucumber (Gy14) v2	cgybcmoB627
CmoCh04G016830	Melon (DHL92) v3.6.1	cmomedB735
CmoCh04G016830	Melon (DHL92) v3.6.1	cmomedB753
CmoCh04G016830	Silver-seed gourd	carcmoB0515
CmoCh04G016830	Silver-seed gourd	carcmoB1138