CmoCh04G016820 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G016820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 8529763 .. 8530100 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGGGAACAGCAGCAGCGTCGGAAGAGGAAGCGTTTTGGCAGGTCGAGCTCGCATGTTCAGTTTTTGACTCGAAGATCTCTGTTTCTTTGCCTTGCATTTTTTGCTTTTCTCTTGTTTCTCTCTTCAAGTCGGTGGTTCTCGATTGCGGCGGCGTCCTTCCGGCCAGTTCTCGATGTCTCTTCCACCACTCTCTCCCGCTTGTCCACCTCTGCCAGCAAGTCTACACTTGACAATTCTTTGAGCGGTAAGTATTCGCCTTTGAGAATCGAAAGACGAGTCCTTTTCCCAGACCACTTGCTTTTGATGGTCACTGGCGAATTCAGCCGAGATGA

mRNA sequence

ATGGATTGGGAACAGCAGCAGCGTCGGAAGAGGAAGCGTTTTGGCAGGTCGAGCTCGCATGTTCAGTTTTTGACTCGAAGATCTCTGTTTCTTTGCCTTGCATTTTTTGCTTTTCTCTTGTTTCTCTCTTCAAGTCGGTGGTTCTCGATTGCGGCGGCGTCCTTCCGGCCAGTTCTCGATGTCTCTTCCACCACTCTCTCCCGCTTGTCCACCTCTGCCAGCAAGTCTACACTTGACAATTCTTTGAGCGTATTCGCCTTTGAGAATCGAAAGACGAGTCCTTTTCCCAGACCACTTGCTTTTGATGGTCACTGGCGAATTCAGCCGAGATGA

Coding sequence (CDS)

ATGGATTGGGAACAGCAGCAGCGTCGGAAGAGGAAGCGTTTTGGCAGGTCGAGCTCGCATGTTCAGTTTTTGACTCGAAGATCTCTGTTTCTTTGCCTTGCATTTTTTGCTTTTCTCTTGTTTCTCTCTTCAAGTCGGTGGTTCTCGATTGCGGCGGCGTCCTTCCGGCCAGTTCTCGATGTCTCTTCCACCACTCTCTCCCGCTTGTCCACCTCTGCCAGCAAGTCTACACTTGACAATTCTTTGAGCGTATTCGCCTTTGAGAATCGAAAGACGAGTCCTTTTCCCAGACCACTTGCTTTTGATGGTCACTGGCGAATTCAGCCGAGATGA

Homology

[Close]

BLAST of CmoCh04G016820 vs. TrEMBL
Match: A0A0A0KTU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603970 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.4e-30
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MDWEQQQRRKRKRFGRSSSHVQFLTRRSLFLCLAFFAFLLFLSSSRWFSIAAASFRPVLD 60
          MDWE QQRRKRKRFGRSSSHVQF TRRSLFLCL+FFAFLLFLSSSRWFSIAAASFRPVLD
Sbjct: 1  MDWE-QQRRKRKRFGRSSSHVQFFTRRSLFLCLSFFAFLLFLSSSRWFSIAAASFRPVLD 60

Query: 61 VSSTTLSRLSTSASKSTLDNSLS 84
           SSTTLSRLSTSASKSTLDNSLS
Sbjct: 61 ASSTTLSRLSTSASKSTLDNSLS 82

[Close]

BLAST of CmoCh04G016820 vs. TrEMBL
Match: A0A059D974_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03384 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-06
Identity = 47/82 (57.32%), Postives = 55/82 (67.07%), Query Frame = 1


Query: 4  EQQQRRKRKRFGRSS-----SHVQFLTRRSLFLCLAFFAFLLFLSSSRWFS-IAAASFRP 63
          E +QRRKRK    S+     S  Q  + RSL LCL+FF FLLFLSS R  S ++ ASFRP
Sbjct: 3  ESEQRRKRKLRASSAKTLYHSAAQLFSLRSLVLCLSFFVFLLFLSSDRSLSAVSTASFRP 62

Query: 64 VLDVSSTTLSRLSTSASKSTLD 80
          VL  +STTLS LS+SAS S LD
Sbjct: 63 VLS-ASTTLSLLSSSASHSVLD 83

[Close]

BLAST of CmoCh04G016820 vs. NCBI nr
Match: gi|659090929|ref|XP_008446279.1| (PREDICTED: UPF0392 protein RCOM_0530710 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 6.3e-30
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MDWEQQQRRKRKRFGRSSSHVQFLTRRSLFLCLAFFAFLLFLSSSRWFSIAAASFRPVLD 60
          MDWE QQRRKRKRFGRSSSHVQF TRRSLFLCL+FFAFLLFLSSSRWFSIAAASFRPVLD
Sbjct: 1  MDWE-QQRRKRKRFGRSSSHVQFFTRRSLFLCLSFFAFLLFLSSSRWFSIAAASFRPVLD 60

Query: 61 VSSTTLSRLSTSASKSTLDNSLS 84
           SSTTLSRLSTSASKSTLDNSLS
Sbjct: 61 ASSTTLSRLSTSASKSTLDNSLS 82

[Close]

BLAST of CmoCh04G016820 vs. NCBI nr
Match: gi|449434865|ref|XP_004135216.1| (PREDICTED: UPF0392 protein RCOM_0530710 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 6.3e-30
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MDWEQQQRRKRKRFGRSSSHVQFLTRRSLFLCLAFFAFLLFLSSSRWFSIAAASFRPVLD 60
          MDWE QQRRKRKRFGRSSSHVQF TRRSLFLCL+FFAFLLFLSSSRWFSIAAASFRPVLD
Sbjct: 1  MDWE-QQRRKRKRFGRSSSHVQFFTRRSLFLCLSFFAFLLFLSSSRWFSIAAASFRPVLD 60

Query: 61 VSSTTLSRLSTSASKSTLDNSLS 84
           SSTTLSRLSTSASKSTLDNSLS
Sbjct: 61 ASSTTLSRLSTSASKSTLDNSLS 82

[Close]

BLAST of CmoCh04G016820 vs. NCBI nr
Match: gi|470123340|ref|XP_004297685.1| (PREDICTED: UPF0392 protein RCOM_0530710 [Fragaria vesca subsp. vesca])

HSP 1 Score: 68.6 bits (166), Expect = 8.0e-09
Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 1


Query: 4  EQQQRRKRKRFGRSSS---HVQFLTRRSLFLCLAFFAFLLFLSSSRWFSIAAASFRPVLD 63
          + +QRRKRKR GRS S      +L+RRSL LC +FF FLLFLSS R+     ASFRPV+ 
Sbjct: 2  DSEQRRKRKRLGRSYSLPAKCYYLSRRSLLLCFSFFVFLLFLSSGRF---RTASFRPVIT 61

Query: 64 VSSTTLSRLSTSASKSTLDNSLSVFAFENRKTSP 95
           SSTTLS LS++A  S LD      +F +R  +P
Sbjct: 62 ASSTTLSLLSSTAHNSVLD------SFAHRNDAP 86

[Close]

BLAST of CmoCh04G016820 vs. NCBI nr
Match: gi|694361732|ref|XP_009360503.1| (PREDICTED: UPF0392 protein RCOM_0530710-like [Pyrus x bretschneideri])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 6  QQRRKRKRFGRSSSHV-QFLT-RRSLFLCLAFFAFLLFLSSSRWFSIAAASFRPVLDVSS 65
          +QRRKRKR GRS     Q+L+ RR L LC +FF FLLF+SS R+     ASFRPVL  SS
Sbjct: 5  EQRRKRKRMGRSYLQAKQYLSLRRPLVLCFSFFIFLLFVSSGRF---RPASFRPVLTASS 64

Query: 66 TTLSRLSTSASKSTLDN 81
          TTLS LS++AS S L++
Sbjct: 65 TTLSLLSSTASNSILES 78

[Close]

BLAST of CmoCh04G016820 vs. NCBI nr
Match: gi|657994514|ref|XP_008389564.1| (PREDICTED: UPF0392 protein RCOM_0530710-like [Malus domestica])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 6  QQRRKRKRFGRSSSHV-QFLT-RRSLFLCLAFFAFLLFLSSSRWFSIAAASFRPVLDVSS 65
          +QRRKRKR GRS     Q+L+ RR L LC +FF FLLF+SS R+     ASFRPVL  SS
Sbjct: 5  EQRRKRKRMGRSYLQAKQYLSLRRPLVLCFSFFIFLLFVSSGRF---RPASFRPVLTASS 64

Query: 66 TTLSRLSTSASKSTLDN 81
          TTLS LS++AS S L++
Sbjct: 65 TTLSLLSSTASNSILES 78

The following BLAST results are available for this feature:

BLAST of CmoCh04G016820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G016820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTU0_CUCSA	4.4e-30	95.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603970 PE=4 SV=1	[more]
A0A059D974_EUCGR	4.4e-06	57.32	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03384 PE=4 SV=1	[more]

BLAST of CmoCh04G016820 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G016820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090929\|ref\|XP_008446279.1\|	6.3e-30	95.18	PREDICTED: UPF0392 protein RCOM_0530710 [Cucumis melo]	[more]
gi\|449434865\|ref\|XP_004135216.1\|	6.3e-30	95.18	PREDICTED: UPF0392 protein RCOM_0530710 [Cucumis sativus]	[more]
gi\|470123340\|ref\|XP_004297685.1\|	8.0e-09	52.13	PREDICTED: UPF0392 protein RCOM_0530710 [Fragaria vesca subsp. vesca]	[more]
gi\|694361732\|ref\|XP_009360503.1\|	1.3e-06	58.44	PREDICTED: UPF0392 protein RCOM_0530710-like [Pyrus x bretschneideri]	[more]
gi\|657994514\|ref\|XP_008389564.1\|	1.3e-06	58.44	PREDICTED: UPF0392 protein RCOM_0530710-like [Malus domestica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G016820.1	CmoCh04G016820.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G016820	CsaV3_5G032020	Cucumber (Chinese Long) v3	cmocucB0847
CmoCh04G016820	Carg07990	Silver-seed gourd	carcmoB0515
CmoCh04G016820	Carg01753	Silver-seed gourd	carcmoB1138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G016820	Cucumber (Chinese Long) v3	cmocucB0798
CmoCh04G016820	Cucumber (Chinese Long) v3	cmocucB0807
CmoCh04G016820	Watermelon (97103) v2	cmowmbB734
CmoCh04G016820	Watermelon (97103) v2	cmowmbB746
CmoCh04G016820	Wax gourd	cmowgoB0903
CmoCh04G016820	Cucurbita moschata (Rifu)	cmocmoB124
CmoCh04G016820	Cucurbita moschata (Rifu)	cmocmoB465
CmoCh04G016820	Cucumber (Gy14) v1	cgycmoB0591
CmoCh04G016820	Cucumber (Gy14) v1	cgycmoB0797
CmoCh04G016820	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G016820	Cucurbita maxima (Rimu)	cmacmoB733
CmoCh04G016820	Wild cucumber (PI 183967)	cmocpiB687
CmoCh04G016820	Wild cucumber (PI 183967)	cmocpiB689
CmoCh04G016820	Wild cucumber (PI 183967)	cmocpiB723
CmoCh04G016820	Cucumber (Chinese Long) v2	cmocuB673
CmoCh04G016820	Cucumber (Chinese Long) v2	cmocuB676
CmoCh04G016820	Cucumber (Chinese Long) v2	cmocuB715
CmoCh04G016820	Melon (DHL92) v3.5.1	cmomeB645
CmoCh04G016820	Melon (DHL92) v3.5.1	cmomeB659
CmoCh04G016820	Melon (DHL92) v3.5.1	cmomeB666
CmoCh04G016820	Watermelon (Charleston Gray)	cmowcgB659
CmoCh04G016820	Watermelon (Charleston Gray)	cmowcgB669
CmoCh04G016820	Watermelon (97103) v1	cmowmB698
CmoCh04G016820	Watermelon (97103) v1	cmowmB713
CmoCh04G016820	Watermelon (97103) v1	cmowmB741
CmoCh04G016820	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G016820	Cucurbita pepo (Zucchini)	cmocpeB676
CmoCh04G016820	Bottle gourd (USVL1VR-Ls)	cmolsiB644
CmoCh04G016820	Bottle gourd (USVL1VR-Ls)	cmolsiB671
CmoCh04G016820	Bottle gourd (USVL1VR-Ls)	cmolsiB687
CmoCh04G016820	Cucumber (Gy14) v2	cgybcmoB119
CmoCh04G016820	Cucumber (Gy14) v2	cgybcmoB627
CmoCh04G016820	Melon (DHL92) v3.6.1	cmomedB735
CmoCh04G016820	Melon (DHL92) v3.6.1	cmomedB753