CmoCh04G016380 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G016380
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase
Location	Cmo_Chr04 : 8370606 .. 8371624 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTATGTGGTAGTGACAAAAGACAATTGTATATCTGCGACAACCAGGTATATGAGAAGGCTACATAATTATGATACAACGTTAATAGTAGATTCAATCTCATTTTTCTTTTAATATCAGTCAAGAGTTCGTTAATATTCATTTGGCCTCTAACCTGTACTTATCTTAGTGTTTGGTTAACGATTTTAGAGTTGAAGTGCATCCGTTATCCTTTTTATTTTTTGTAATTTGAGGCAATAGACTGCCTTTCCAGTGTTTTGTTCTTTGTTCATGTTATTTTTCTTGTCTGGTGGATCCCAGACAATTTTTTTTTGGTTTATCTGATCAAAGTATTTGAAATTGTTAATAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCTGCCCCAACTGATGAAATTCCCGCCAGAATGGTGCTTACCACTCTTGATTCTGCTGTACATTGGGCAACCTCTTCGCCTTGTGGCCCTGTTCACATAAATTGTCCATTTAGGGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTCCTTAAATGGATTACAAAATTGGTTATCAAGCAGTGAAGCTTTTACCAAATATATTCGACTTGAAGCATCTCCAATGTCTATTGATACTTTTGGCCATATGGCAGAGGTTTTAAAAGTAATCCATGGAGCCAGAAATGGAATTCTACTTCTTGGGTCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTGTTGGCCAAACATATTTCATGGCCTATAGTAGCTGATGTATTGTCTGGTTTACGATTGAGAAAGAGCTTGTCTTCCTTCCTAGAAGTGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCATGCCTTGCTTTCTGATTCAGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGGTAATACTTTCCCACACATTCTTTTTTTCTTAAGCCTCCTTTCACTCTCCTTAAATTAAAGCCTAACGTAATCATCACCATAGTACATCTCATCTTCTAG

mRNA sequence

ATGACGTATGTGGTAGTGACAAAAGACAATTGTATATCTGCGACAACCAGATTCAATCTCATTTTTCTTTTAATATCAGTCAAGAGTTCGTTAATATTCATTTGGCCTCTAACCTGTACTTATCTTAGTGTTTGGTTAACGATTTTAGAGTTGAAGTGCATCCACTGCCTTTCCAGTGTTTTGTTCTTTGTTCATGTTATTTTTCTTGTCTGGTGGATCCCAGACAATTTTTTTTTGGTTTATCTGATCAAAGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCTGCCCCAACTGATGAAATTCCCGCCAGAATGGTGCTTACCACTCTTGATTCTGCTGTACATTGGGCAACCTCTTCGCCTTGTGGCCCTGTTCACATAAATTGTCCATTTAGGGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTCCTTAAATGGATTACAAAATTGGTTATCAAGCAGTGAAGCTTTTACCAAATATATTCGACTTGAAGCATCTCCAATGTCTATTGATACTTTTGGCCATATGGCAGAGGTTTTAAAAGTAATCCATGGAGCCAGAAATGGAATTCTACTTCTTGGGTCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTGTTGGCCAAACATATTTCATGGCCTATAGTAGCTGATGTATTGTCTGGTTTACGATTGAGAAAGAGCTTGTCTTCCTTCCTAGAAGTGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCATGCCTTGCTTTCTGATTCAGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGCCTCCTTTCACTCTCCTTAAATTAAAGCCTAACGTAATCATCACCATAGTACATCTCATCTTCTAG

Coding sequence (CDS)

ATGACGTATGTGGTAGTGACAAAAGACAATTGTATATCTGCGACAACCAGATTCAATCTCATTTTTCTTTTAATATCAGTCAAGAGTTCGTTAATATTCATTTGGCCTCTAACCTGTACTTATCTTAGTGTTTGGTTAACGATTTTAGAGTTGAAGTGCATCCACTGCCTTTCCAGTGTTTTGTTCTTTGTTCATGTTATTTTTCTTGTCTGGTGGATCCCAGACAATTTTTTTTTGGTTTATCTGATCAAAGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCTGCCCCAACTGATGAAATTCCCGCCAGAATGGTGCTTACCACTCTTGATTCTGCTGTACATTGGGCAACCTCTTCGCCTTGTGGCCCTGTTCACATAAATTGTCCATTTAGGGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTCCTTAAATGGATTACAAAATTGGTTATCAAGCAGTGAAGCTTTTACCAAATATATTCGACTTGAAGCATCTCCAATGTCTATTGATACTTTTGGCCATATGGCAGAGGTTTTAAAAGTAATCCATGGAGCCAGAAATGGAATTCTACTTCTTGGGTCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTGTTGGCCAAACATATTTCATGGCCTATAGTAGCTGATGTATTGTCTGGTTTACGATTGAGAAAGAGCTTGTCTTCCTTCCTAGAAGTGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCATGCCTTGCTTTCTGATTCAGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGCCTCCTTTCACTCTCCTTAAATTAAAGCCTAACGTAATCATCACCATAGTACATCTCATCTTCTAG

Homology

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BLAST of CmoCh04G016380 vs. Swiss-Prot
Match: PHYLO_ARATH (Protein PHYLLO, chloroplastic OS=Arabidopsis thaliana GN=PHYLLO PE=2 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 1.6e-64
Identity = 114/190 (60.00%), Postives = 149/190 (78.42%), Query Frame = 1


Query: 84  KVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 143
           ++NHFGSFVRFFF+LP PTD IP RMVLTT+DSA+HWAT S CGPVH+NCPFR+PL+ SP
Sbjct: 478 QINHFGSFVRFFFNLPPPTDLIPVRMVLTTVDSALHWATGSACGPVHLNCPFRDPLDGSP 537

Query: 144 SPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSI 203
           + W+ + LNGL  W+S++E FTKY ++++      T G + E+L+VI  A+ G+LL+G+I
Sbjct: 538 TNWSSNCLNGLDMWMSNAEPFTKYFQVQSHKSDGVTTGQITEILQVIKEAKKGLLLIGAI 597

Query: 204 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVR 263
            +EDEIWA+ LLAK + WP+VADVLSG+RLRK    F+E +    FVDHLDHAL SDSVR
Sbjct: 598 HTEDEIWASLLLAKELMWPVVADVLSGVRLRKLFKPFVE-KLTHVFVDHLDHALFSDSVR 657

Query: 264 KWLKFDVIIQ 274
             ++FDV+IQ
Sbjct: 658 NLIEFDVVIQ 666

[Close]

BLAST of CmoCh04G016380 vs. Swiss-Prot
Match: MEND_SALRD (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=menD PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.7e-18
Identity = 48/149 (32.21%), Postives = 79/149 (53.02%), Query Frame = 1


Query: 84  KVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 143
           +V  FG +VR+   +P P+DE+    VLTT D A+H    +P GPVH+NC FR+PLE   
Sbjct: 130 QVKIFGDYVRWQADVPPPSDEVDPAYVLTTADQALHQTLRAPAGPVHVNCMFRKPLEPVE 189

Query: 144 SPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSI 203
           +  +++    +  W   +E +T Y     SP   +    +  + + + G  +G+++ G +
Sbjct: 190 TEASVAVPTAVDAWARGTEPYTHYPTPAPSPPGPE----VDALAETVRGTEHGLVVAGRL 249

Query: 204 QSEDEIWAAFLLAKHISWPIVADVLSGLR 233
            S     A   LA H+ WP++ D+ S LR
Sbjct: 250 DSAAAADATRRLATHLGWPLIPDLTSRLR 274

[Close]

BLAST of CmoCh04G016380 vs. Swiss-Prot
Match: MEND_PROA2 (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=menD PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-18
Identity = 59/196 (30.10%), Postives = 100/196 (51.02%), Query Frame = 1


Query: 88  FGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWN 147
           +GS+ R+ F LP P+ + P   +L+ +D AV   T++P GPVH+N  FREPLE  P   N
Sbjct: 126 YGSYSRWSFQLPEPSTDTPPEAILSAIDYAVSTCTANPSGPVHLNIAFREPLEPVPLNEN 185

Query: 148 LSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSIQSED 207
              L+ L  W SS   +++ ++ ++SP S      + EV +++  A N +++ G +    
Sbjct: 186 SPWLSSLGKWNSSRAPWSRTLQRQSSPES----ASVKEVARLLASAENPLIIAGHLDRPA 245

Query: 208 EIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVRKWLK 267
           +  A   L+K ++  + AD+ S LRL K   +             L  A LSD   +  +
Sbjct: 246 DAQAVLNLSKSLNIALYADISSQLRLHKETVA-------------LQQAWLSDKYVEQHR 304

Query: 268 FDVIIQPPFTLLKLKP 284
            D+++    +L+  KP
Sbjct: 306 ADLVLHFGGSLVGKKP 304

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BLAST of CmoCh04G016380 vs. Swiss-Prot
Match: MEND_CHLPD (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=menD PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.3e-17
Identity = 55/148 (37.16%), Postives = 79/148 (53.38%), Query Frame = 1


Query: 88  FGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWN 147
           FGS+ R+ F LP P+ EIP + VL+ +D AV  AT +P GPVH+N PFREP E   S   
Sbjct: 126 FGSYSRWNFRLPEPSAEIPLQSVLSAIDHAVEKATGNPPGPVHLNVPFREPFEPELSDLK 185

Query: 148 LSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLK---VIHGARNGILLLGSIQ 207
              L  + +W+ S+E   +    E  P       H A + K   +I  +R  + + G + 
Sbjct: 186 DPWLAPVAHWIDSAEPLRRCSHAENVP-------HPAVIEKTAELIKASRQPLFIAGKLD 245

Query: 208 SEDEIWAAFLLAKHISWPIVADVLSGLR 233
           S ++  A  LLA  +  P+ AD+ SGLR
Sbjct: 246 SREDAIAVGLLAGSLGIPLYADLSSGLR 266

[Close]

BLAST of CmoCh04G016380 vs. Swiss-Prot
Match: MEND_PELPB (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=menD PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.6e-17
Identity = 54/151 (35.76%), Postives = 78/151 (51.66%), Query Frame = 1


Query: 86  NHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSP 145
           N FGS+ R+   LP P+ EIP + +L+T+  AV     SP GPVH+N PFREPLE     
Sbjct: 124 NIFGSYTRWHMQLPVPSKEIPLKALLSTIAHAVVKTIGSPAGPVHLNQPFREPLEPEIPD 183

Query: 146 WNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSIQS 205
              +    LQ WL + +   K    E  P   +T   + E L V   A+  +++ G++Q 
Sbjct: 184 LKDAWAAPLQEWLENGKPSGKSALPEKEP-DAETLSLLREALAV---AKEPLIIAGNMQK 243

Query: 206 EDEIWAAFLLAKHISWPIVADVLSGLRLRKS 237
            +E  A   LA  +  P+  D  SGLRL+ +
Sbjct: 244 PEEAEAVEQLALELQIPLYTDFSSGLRLKST 270

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BLAST of CmoCh04G016380 vs. TrEMBL
Match: A0A0A0KQZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G607980 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.3e-97
Identity = 174/190 (91.58%), Postives = 182/190 (95.79%), Query Frame = 1


Query: 84  KVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 143
           +VNHFGSFVRFFFSLPAPTD++PARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP
Sbjct: 478 QVNHFGSFVRFFFSLPAPTDQLPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 537

Query: 144 SPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSI 203
           SPWNLS LNGL  W SS+E FTKYIRLEASP S DTFGHMAEVLKVIHGARNG+LLLGSI
Sbjct: 538 SPWNLSCLNGLHIWSSSTEVFTKYIRLEASPTSTDTFGHMAEVLKVIHGARNGVLLLGSI 597

Query: 204 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVR 263
           QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLS FLE++NNFFF+DHLDHALLSDSVR
Sbjct: 598 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSPFLEMKNNFFFIDHLDHALLSDSVR 657

Query: 264 KWLKFDVIIQ 274
           KWLKFDVIIQ
Sbjct: 658 KWLKFDVIIQ 667

[Close]

BLAST of CmoCh04G016380 vs. TrEMBL
Match: F6HGG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g00870 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.0e-74
Identity = 134/190 (70.53%), Postives = 159/190 (83.68%), Query Frame = 1


Query: 84  KVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 143
           +VNHFGSFVRFFF LP PTD IPARM+LTTLDSAV+WATSSPCGPVHINCPFREPLENSP
Sbjct: 101 QVNHFGSFVRFFFGLPVPTDHIPARMILTTLDSAVYWATSSPCGPVHINCPFREPLENSP 160

Query: 144 SPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSI 203
             W LS L GL +W+SS+E FTKYI+L+ S    D+ G MAEV++VI GA+ G+LL+G+I
Sbjct: 161 KEWMLSCLKGLDSWMSSAEPFTKYIQLQHSHAPDDSQGQMAEVIEVIQGAKRGLLLIGAI 220

Query: 204 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVR 263
            +ED+IWAA LLAKH+ WP+VAD+LSGLRLRK  +SF E+E+N  F+DHLDHALLSD VR
Sbjct: 221 TTEDDIWAALLLAKHLCWPVVADILSGLRLRKLSTSFQEIEDNVLFLDHLDHALLSDFVR 280

Query: 264 KWLKFDVIIQ 274
            W + DVIIQ
Sbjct: 281 VWAQADVIIQ 290

[Close]

BLAST of CmoCh04G016380 vs. TrEMBL
Match: M5XTC0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016512mg PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.9e-73
Identity = 133/190 (70.00%), Postives = 156/190 (82.11%), Query Frame = 1


Query: 84  KVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 143
           +VNHFGSFVRFFFSLPAPTD IPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP
Sbjct: 416 QVNHFGSFVRFFFSLPAPTDHIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 475

Query: 144 SPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSI 203
             W LS L GL  W+SS+E FTKYI+++      D  G M+E++ VI G+  G+LL+G+I
Sbjct: 476 RKWMLSCLKGLDFWMSSAEPFTKYIQVQRVHAYDDGCGQMSEIMNVIKGSNKGLLLIGAI 535

Query: 204 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVR 263
            SEDE+WA  LLAKH+ WP+VAD+LSGLRLRK L++F E+E++  FVDHLDHALLSDSVR
Sbjct: 536 HSEDEMWAVLLLAKHLQWPVVADILSGLRLRKLLTAFPEIEDDLLFVDHLDHALLSDSVR 595

Query: 264 KWLKFDVIIQ 274
             +  DVIIQ
Sbjct: 596 SGINLDVIIQ 605

[Close]

BLAST of CmoCh04G016380 vs. TrEMBL
Match: A0A0B2SJQ1_GLYSO (Protein PHYLLO, chloroplastic OS=Glycine soja GN=glysoja_039994 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.9e-72
Identity = 131/193 (67.88%), Postives = 160/193 (82.90%), Query Frame = 1


Query: 81  YLIKVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLE 140
           Y ++VNHFGSFVRFFF+LPAPTD+IPA+MVLTTLDSAVHWATSSPCGPVHINCPFREPLE
Sbjct: 251 YSLQVNHFGSFVRFFFNLPAPTDQIPAKMVLTTLDSAVHWATSSPCGPVHINCPFREPLE 310

Query: 141 NSPSPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLL 200
           +SP  W  S L+GL  W++++E FTKYI ++ S   I+  G M EVL +I  A N +LL 
Sbjct: 311 SSPCRWLSSCLSGLDLWMANAEPFTKYIHMQLSHTCINAPGEMTEVLNLILRANNSLLLF 370

Query: 201 GSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSD 260
           G+I +EDE+WAA LLAKH+ WP+VAD+LSGLRLRK L+SF ++E NF FVD+LDHALLSD
Sbjct: 371 GAIHTEDEMWAALLLAKHLQWPVVADILSGLRLRKLLTSFPDIERNFIFVDNLDHALLSD 430

Query: 261 SVRKWLKFDVIIQ 274
           SV+ WL+ DV+IQ
Sbjct: 431 SVKGWLEVDVVIQ 443

[Close]

BLAST of CmoCh04G016380 vs. TrEMBL
Match: A0A0R0GE81_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_15G2768001 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 5.6e-72
Identity = 130/190 (68.42%), Postives = 158/190 (83.16%), Query Frame = 1


Query: 84  KVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 143
           +VNHFGSFVRFFF+LPAPTD+IPA+MVLTTLDSAVHWATSSPCGPVHINCPFREPLE+SP
Sbjct: 433 QVNHFGSFVRFFFNLPAPTDQIPAKMVLTTLDSAVHWATSSPCGPVHINCPFREPLESSP 492

Query: 144 SPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSI 203
             W  S L+GL  W++++E FTKYI ++ S   I+  G M EVL +I  A N +LL G+I
Sbjct: 493 CRWLSSCLSGLDLWMANAEPFTKYIHMQLSHTCINAPGEMTEVLNLILRANNSLLLFGAI 552

Query: 204 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVR 263
            +EDE+WAA LLAKH+ WP+VAD+LSGLRLRK L+SF ++E NF FVD+LDHALLSDSV+
Sbjct: 553 HTEDEMWAALLLAKHLQWPVVADILSGLRLRKLLTSFPDIERNFIFVDNLDHALLSDSVK 612

Query: 264 KWLKFDVIIQ 274
            WL+ DV+IQ
Sbjct: 613 GWLEVDVVIQ 622

[Close]

BLAST of CmoCh04G016380 vs. TAIR10
Match: AT1G68890.1 (AT1G68890.1 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases)

HSP 1 Score: 247.7 bits (631), Expect = 9.1e-66
Identity = 114/190 (60.00%), Postives = 149/190 (78.42%), Query Frame = 1


Query: 84  KVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 143
           ++NHFGSFVRFFF+LP PTD IP RMVLTT+DSA+HWAT S CGPVH+NCPFR+PL+ SP
Sbjct: 478 QINHFGSFVRFFFNLPPPTDLIPVRMVLTTVDSALHWATGSACGPVHLNCPFRDPLDGSP 537

Query: 144 SPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSI 203
           + W+ + LNGL  W+S++E FTKY ++++      T G + E+L+VI  A+ G+LL+G+I
Sbjct: 538 TNWSSNCLNGLDMWMSNAEPFTKYFQVQSHKSDGVTTGQITEILQVIKEAKKGLLLIGAI 597

Query: 204 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVR 263
            +EDEIWA+ LLAK + WP+VADVLSG+RLRK    F+E +    FVDHLDHAL SDSVR
Sbjct: 598 HTEDEIWASLLLAKELMWPVVADVLSGVRLRKLFKPFVE-KLTHVFVDHLDHALFSDSVR 657

Query: 264 KWLKFDVIIQ 274
             ++FDV+IQ
Sbjct: 658 NLIEFDVVIQ 666

[Close]

BLAST of CmoCh04G016380 vs. NCBI nr
Match: gi|659091327|ref|XP_008446492.1| (PREDICTED: protein PHYLLO, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 366.7 bits (940), Expect = 3.8e-98
Identity = 177/190 (93.16%), Postives = 183/190 (96.32%), Query Frame = 1


Query: 84  KVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 143
           +VNHFGSFVRFFFSLPAPTD+IPARMVLTTLDSAVHWATSSP GPVHINCPFREPLENSP
Sbjct: 478 QVNHFGSFVRFFFSLPAPTDQIPARMVLTTLDSAVHWATSSPYGPVHINCPFREPLENSP 537

Query: 144 SPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSI 203
           SPWNLS LNGL  WLSS+E FTKYIRLEASP SIDTFGHMAEVLKVIHGARNG+LLLGSI
Sbjct: 538 SPWNLSCLNGLHIWLSSTEVFTKYIRLEASPTSIDTFGHMAEVLKVIHGARNGVLLLGSI 597

Query: 204 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVR 263
           QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLS FLE+ENNFFF+DHLDHALLSDSVR
Sbjct: 598 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSPFLEMENNFFFIDHLDHALLSDSVR 657

Query: 264 KWLKFDVIIQ 274
           KWLKFDVIIQ
Sbjct: 658 KWLKFDVIIQ 667

[Close]

BLAST of CmoCh04G016380 vs. NCBI nr
Match: gi|659091323|ref|XP_008446490.1| (PREDICTED: protein PHYLLO, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 366.7 bits (940), Expect = 3.8e-98
Identity = 177/190 (93.16%), Postives = 183/190 (96.32%), Query Frame = 1


Query: 84  KVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 143
           +VNHFGSFVRFFFSLPAPTD+IPARMVLTTLDSAVHWATSSP GPVHINCPFREPLENSP
Sbjct: 478 QVNHFGSFVRFFFSLPAPTDQIPARMVLTTLDSAVHWATSSPYGPVHINCPFREPLENSP 537

Query: 144 SPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSI 203
           SPWNLS LNGL  WLSS+E FTKYIRLEASP SIDTFGHMAEVLKVIHGARNG+LLLGSI
Sbjct: 538 SPWNLSCLNGLHIWLSSTEVFTKYIRLEASPTSIDTFGHMAEVLKVIHGARNGVLLLGSI 597

Query: 204 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVR 263
           QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLS FLE+ENNFFF+DHLDHALLSDSVR
Sbjct: 598 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSPFLEMENNFFFIDHLDHALLSDSVR 657

Query: 264 KWLKFDVIIQ 274
           KWLKFDVIIQ
Sbjct: 658 KWLKFDVIIQ 667

[Close]

BLAST of CmoCh04G016380 vs. NCBI nr
Match: gi|778705732|ref|XP_011655729.1| (PREDICTED: protein PHYLLO, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 1.9e-97
Identity = 174/190 (91.58%), Postives = 182/190 (95.79%), Query Frame = 1


Query: 84  KVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 143
           +VNHFGSFVRFFFSLPAPTD++PARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP
Sbjct: 478 QVNHFGSFVRFFFSLPAPTDQLPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 537

Query: 144 SPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSI 203
           SPWNLS LNGL  W SS+E FTKYIRLEASP S DTFGHMAEVLKVIHGARNG+LLLGSI
Sbjct: 538 SPWNLSCLNGLHIWSSSTEVFTKYIRLEASPTSTDTFGHMAEVLKVIHGARNGVLLLGSI 597

Query: 204 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVR 263
           QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLS FLE++NNFFF+DHLDHALLSDSVR
Sbjct: 598 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSPFLEMKNNFFFIDHLDHALLSDSVR 657

Query: 264 KWLKFDVIIQ 274
           KWLKFDVIIQ
Sbjct: 658 KWLKFDVIIQ 667

[Close]

BLAST of CmoCh04G016380 vs. NCBI nr
Match: gi|700196833|gb|KGN52010.1| (hypothetical protein Csa_5G607980 [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 1.9e-97
Identity = 174/190 (91.58%), Postives = 182/190 (95.79%), Query Frame = 1


Query: 84  KVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 143
           +VNHFGSFVRFFFSLPAPTD++PARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP
Sbjct: 478 QVNHFGSFVRFFFSLPAPTDQLPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 537

Query: 144 SPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSI 203
           SPWNLS LNGL  W SS+E FTKYIRLEASP S DTFGHMAEVLKVIHGARNG+LLLGSI
Sbjct: 538 SPWNLSCLNGLHIWSSSTEVFTKYIRLEASPTSTDTFGHMAEVLKVIHGARNGVLLLGSI 597

Query: 204 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVR 263
           QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLS FLE++NNFFF+DHLDHALLSDSVR
Sbjct: 598 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSPFLEMKNNFFFIDHLDHALLSDSVR 657

Query: 264 KWLKFDVIIQ 274
           KWLKFDVIIQ
Sbjct: 658 KWLKFDVIIQ 667

[Close]

BLAST of CmoCh04G016380 vs. NCBI nr
Match: gi|778705742|ref|XP_011655732.1| (PREDICTED: protein PHYLLO, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 1.9e-97
Identity = 174/190 (91.58%), Postives = 182/190 (95.79%), Query Frame = 1


Query: 84  KVNHFGSFVRFFFSLPAPTDEIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 143
           +VNHFGSFVRFFFSLPAPTD++PARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP
Sbjct: 478 QVNHFGSFVRFFFSLPAPTDQLPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSP 537

Query: 144 SPWNLSSLNGLQNWLSSSEAFTKYIRLEASPMSIDTFGHMAEVLKVIHGARNGILLLGSI 203
           SPWNLS LNGL  W SS+E FTKYIRLEASP S DTFGHMAEVLKVIHGARNG+LLLGSI
Sbjct: 538 SPWNLSCLNGLHIWSSSTEVFTKYIRLEASPTSTDTFGHMAEVLKVIHGARNGVLLLGSI 597

Query: 204 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEVENNFFFVDHLDHALLSDSVR 263
           QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLS FLE++NNFFF+DHLDHALLSDSVR
Sbjct: 598 QSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSPFLEMKNNFFFIDHLDHALLSDSVR 657

Query: 264 KWLKFDVIIQ 274
           KWLKFDVIIQ
Sbjct: 658 KWLKFDVIIQ 667

The following BLAST results are available for this feature:

BLAST of CmoCh04G016380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PHYLO_ARATH	1.6e-64	60.00	Protein PHYLLO, chloroplastic OS=Arabidopsis thaliana GN=PHYLLO PE=2 SV=2	[more]
MEND_SALRD	1.7e-18	32.21	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Salin...	[more]
MEND_PROA2	3.0e-18	30.10	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Prost...	[more]
MEND_CHLPD	4.3e-17	37.16	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Chlor...	[more]
MEND_PELPB	9.6e-17	35.76	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Pelod...	[more]

BLAST of CmoCh04G016380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQZ1_CUCSA	1.3e-97	91.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G607980 PE=3 SV=1	[more]
F6HGG1_VITVI	2.0e-74	70.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g00870 PE=4 SV=...	[more]
M5XTC0_PRUPE	3.9e-73	70.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016512mg PE=3 SV=1	[more]
A0A0B2SJQ1_GLYSO	1.9e-72	67.88	Protein PHYLLO, chloroplastic OS=Glycine soja GN=glysoja_039994 PE=3 SV=1	[more]
A0A0R0GE81_SOYBN	5.6e-72	68.42	Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_15G2768001 PE=4 SV=1	[more]

BLAST of CmoCh04G016380 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68890.1	9.1e-66	60.00	magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;cat...	[more]

BLAST of CmoCh04G016380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091327\|ref\|XP_008446492.1\|	3.8e-98	93.16	PREDICTED: protein PHYLLO, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|659091323\|ref\|XP_008446490.1\|	3.8e-98	93.16	PREDICTED: protein PHYLLO, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|778705732\|ref\|XP_011655729.1\|	1.9e-97	91.58	PREDICTED: protein PHYLLO, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|700196833\|gb\|KGN52010.1\|	1.9e-97	91.58	hypothetical protein Csa_5G607980 [Cucumis sativus]	[more]
gi\|778705742\|ref\|XP_011655732.1\|	1.9e-97	91.58	PREDICTED: protein PHYLLO, chloroplastic isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009063	cellular amino acid catabolic process
biological_process	GO:0009234	menaquinone biosynthetic process
biological_process	GO:0042550	photosystem I stabilization
biological_process	GO:0042372	phylloquinone biosynthetic process
biological_process	GO:0019290	siderophore biosynthetic process
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0070204	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity
molecular_function	GO:0070205	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity
molecular_function	GO:0008909	isochorismate synthase activity
molecular_function	GO:0030976	thiamine pyrophosphate binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G016380.1	CmoCh04G016380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR18968	THIAMINE PYROPHOSPHATE ENZYMES	coord: 85..273 score: 6.0
None	No IPR available	PANTHER	PTHR18968:SF114	PROTEIN PHYLLO, CHLOROPLASTIC	coord: 85..273 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G016380	Cucumber (Gy14) v2	cgybcmoB650
CmoCh04G016380	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G016380	Melon (DHL92) v3.6.1	cmomedB752
CmoCh04G016380	Silver-seed gourd	carcmoB0814
CmoCh04G016380	Silver-seed gourd	carcmoB1138
CmoCh04G016380	Silver-seed gourd	carcmoB1397
CmoCh04G016380	Cucumber (Chinese Long) v3	cmocucB0877
CmoCh04G016380	Watermelon (97103) v2	cmowmbB729
CmoCh04G016380	Watermelon (97103) v2	cmowmbB745
CmoCh04G016380	Wax gourd	cmowgoB0892
CmoCh04G016380	Cucurbita moschata (Rifu)	cmocmoB126
CmoCh04G016380	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G016380	Cucumber (Gy14) v1	cgycmoB0793
CmoCh04G016380	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G016380	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G016380	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G016380	Cucumber (Chinese Long) v2	cmocuB741
CmoCh04G016380	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G016380	Watermelon (Charleston Gray)	cmowcgB654
CmoCh04G016380	Watermelon (97103) v1	cmowmB693
CmoCh04G016380	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G016380	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G016380	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G016380	Bottle gourd (USVL1VR-Ls)	cmolsiB686